Wall clock time and date at job start Mon Mar 30 2020 06:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47291 * 2 1 4 4 C 1.42894 * 114.00168 * 180.02562 * 3 2 1 5 5 C 1.53887 * 113.58729 * 149.99568 * 4 3 2 6 6 C 1.53261 * 86.88375 * 89.61020 * 5 4 3 7 7 C 1.52587 * 128.60936 * 245.03799 * 6 5 4 8 8 C 1.52459 * 128.58644 * 165.11231 * 6 5 4 9 9 H 1.09005 * 117.50784 * 225.08203 * 8 6 5 10 10 N 1.46895 * 117.51329 * 10.15084 * 8 6 5 11 11 C 1.46910 * 110.99703 * 204.84787 * 10 8 6 12 12 C 1.53003 * 109.46824 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.46838 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47119 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.53258 * 87.69140 * 25.07872 * 6 5 4 24 24 H 1.09004 * 109.47207 * 59.99959 * 1 2 3 25 25 H 1.08994 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47338 * 300.00582 * 1 2 3 27 27 H 1.08998 * 109.47461 * 240.00085 * 2 1 3 28 28 H 1.09000 * 109.46895 * 119.99662 * 2 1 3 29 29 H 1.09003 * 112.88371 * 18.82737 * 4 3 2 30 30 H 1.08994 * 113.65043 * 335.10879 * 5 4 3 31 31 H 1.09003 * 113.64683 * 204.10292 * 5 4 3 32 32 H 1.09005 * 117.50749 * 134.97766 * 7 6 5 33 33 H 1.08998 * 117.57464 * 349.82355 * 7 6 5 34 34 H 1.00900 * 111.00184 * 80.89523 * 10 8 6 35 35 H 1.08998 * 109.47017 * 60.00119 * 11 10 8 36 36 H 1.09002 * 109.46670 * 299.99530 * 11 10 8 37 37 H 1.08998 * 109.46943 * 60.00420 * 12 11 10 38 38 H 1.08994 * 109.47116 * 300.00031 * 12 11 10 39 39 H 1.09004 * 109.46806 * 60.00265 * 13 12 11 40 40 H 1.09000 * 109.47828 * 300.00570 * 13 12 11 41 41 H 1.09004 * 109.47066 * 60.00422 * 14 13 12 42 42 H 1.08994 * 109.47405 * 300.00252 * 14 13 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.09000 * 113.64156 * 89.41941 * 23 6 5 45 45 H 1.09000 * 113.64641 * 220.41815 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9480 2.7264 -0.7059 6 6 3.8503 3.4233 0.6556 7 6 2.9403 4.5750 1.0726 8 6 4.4614 4.7507 1.0903 9 1 4.9531 4.7842 2.0626 10 7 5.0589 5.5963 0.0483 11 6 6.0798 6.4878 0.6151 12 6 6.6784 7.3503 -0.4979 13 6 7.7411 8.2792 0.0924 14 6 8.3392 9.1421 -1.0204 15 6 9.3865 10.0567 -0.4390 16 1 9.6040 10.0253 0.6184 17 6 10.0714 10.9291 -1.2581 18 7 9.8068 10.9671 -2.5458 19 14 11.3748 12.0573 -0.5387 20 1 11.4817 11.8211 0.9235 21 1 12.6832 11.7755 -1.1821 22 1 10.9963 13.4719 -0.7856 23 6 4.0029 2.0429 1.3037 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9283 0.5461 -0.3250 30 1 3.2591 3.1240 -1.4510 31 1 4.9686 2.6340 -1.0774 32 1 2.4318 4.4923 2.0332 33 1 2.3834 5.0874 0.2883 34 1 4.3504 6.1226 -0.4407 35 1 6.8675 5.8917 1.0757 36 1 5.6233 7.1307 1.3677 37 1 5.8909 7.9464 -0.9589 38 1 7.1348 6.7071 -1.2502 39 1 8.5287 7.6833 0.5538 40 1 7.2843 8.9223 0.8446 41 1 7.5514 9.7380 -1.4813 42 1 8.7960 8.4994 -1.7728 43 1 10.2884 11.5811 -3.1219 44 1 5.0388 1.7603 1.4915 45 1 3.3580 1.8928 2.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721168008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:58 Heat of formation + Delta-G solvation = -38.563509 kcal Electronic energy + Delta-G solvation = -19503.047686 eV Core-core repulsion = 16520.504862 eV Total energy + Delta-G solvation = -2982.542824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86165 -38.51085 -37.18143 -35.67827 -34.31015 -32.61034 -31.40831 -29.39728 -26.71133 -26.05472 -23.78038 -23.46860 -22.99446 -22.44790 -21.57144 -19.36055 -18.43521 -17.54721 -16.83893 -16.70519 -16.53057 -16.44595 -16.15650 -15.51228 -14.86156 -14.61787 -14.50271 -14.26354 -13.91502 -13.68017 -13.47429 -13.19863 -13.04711 -12.88517 -12.80000 -12.60715 -12.36757 -12.27224 -12.20936 -12.11635 -11.98686 -11.43557 -11.37041 -11.30919 -11.11818 -11.01756 -10.61913 -10.55997 -10.36746 -9.07264 -8.20040 -6.31493 1.39539 1.40078 1.53658 2.40846 2.63284 2.86336 3.05170 3.12632 3.66788 3.73230 3.82522 3.97132 4.05906 4.14583 4.21563 4.27558 4.32297 4.47266 4.47962 4.52309 4.61397 4.70611 4.78473 4.83002 4.85752 4.87558 4.92816 4.93001 5.01136 5.04793 5.16004 5.20845 5.24713 5.28542 5.29061 5.36341 5.41682 5.55545 5.78214 5.87112 6.14362 6.25898 6.40413 6.41781 6.86354 7.37811 8.92059 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.060467 B = 0.002203 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.947607 B =12709.304741 C =12824.937523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.387 6.387 4 C 0.068 3.932 5 C -0.092 4.092 6 C -0.145 4.145 7 C -0.165 4.165 8 C 0.032 3.968 9 H 0.110 0.890 10 N -0.662 5.662 11 C 0.075 3.925 12 C -0.105 4.105 13 C -0.097 4.097 14 C 0.022 3.978 15 C -0.544 4.544 16 H 0.060 0.940 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.343 0.657 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.050 0.950 41 H -0.011 1.011 42 H -0.011 1.011 43 H 0.263 0.737 44 H 0.103 0.897 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.148 -22.998 8.164 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.306 6.306 4 C 0.010 3.990 5 C -0.130 4.130 6 C -0.146 4.146 7 C -0.204 4.204 8 C -0.079 4.079 9 H 0.128 0.872 10 N -0.292 5.292 11 C -0.054 4.054 12 C -0.143 4.143 13 C -0.135 4.135 14 C -0.015 4.015 15 C -0.582 4.582 16 H 0.079 0.921 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.162 0.838 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.765 -23.225 7.812 29.690 hybrid contribution 0.262 1.350 0.273 1.402 sum -16.503 -21.875 8.085 28.570 Atomic orbital electron populations 1.21761 0.93190 1.03274 1.02485 1.22712 0.96112 0.83051 1.00825 1.87895 1.20360 1.27703 1.94664 1.22969 0.81316 0.97977 0.96691 1.22593 1.01208 0.94315 0.94876 1.22455 1.04119 0.89620 0.98413 1.23330 0.93127 1.00978 1.02916 1.22407 0.93333 0.97104 0.95058 0.87210 1.60150 1.16785 1.25674 1.26552 1.21882 0.94377 0.93605 0.95563 1.21457 0.97805 0.96996 0.98061 1.21393 0.97118 0.96923 0.98040 1.19035 0.94407 0.93889 0.94212 1.21786 1.20887 1.20641 0.94914 0.92145 1.26043 0.99776 0.99141 0.95218 1.70117 1.43325 1.38767 1.05279 0.85362 0.78344 0.78187 0.78923 1.18527 1.20309 1.20302 1.23005 1.01826 0.92718 0.97437 0.92579 0.89171 0.92485 0.92553 0.92512 0.89255 0.92105 0.88301 0.88001 0.88898 0.83772 0.90966 0.94714 0.92926 0.92645 0.93006 0.93078 0.99220 0.99244 0.92786 0.87888 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.64 6.50 71.98 0.47 1.11 16 3 O -0.39 -7.44 10.28 -148.98 -1.53 -8.97 16 4 C 0.07 1.16 4.37 31.19 0.14 1.29 16 5 C -0.09 -1.84 7.91 30.98 0.25 -1.60 16 6 C -0.14 -2.90 2.96 -52.33 -0.15 -3.06 16 7 C -0.16 -3.28 10.24 30.50 0.31 -2.96 16 8 C 0.03 0.68 6.31 44.78 0.28 0.97 16 9 H 0.11 2.29 7.90 -2.38 -0.02 2.27 16 10 N -0.66 -16.61 6.76 -492.26 -3.33 -19.94 16 11 C 0.07 2.07 5.54 86.30 0.48 2.54 16 12 C -0.11 -3.64 5.47 30.59 0.17 -3.47 16 13 C -0.10 -4.06 5.15 30.59 0.16 -3.90 16 14 C 0.02 1.19 4.97 29.85 0.15 1.33 16 15 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 18 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 19 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 C -0.11 -1.86 7.93 30.98 0.25 -1.61 16 24 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 1.18 7.87 -2.39 -0.02 1.16 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 34 H 0.34 8.34 8.52 -89.69 -0.76 7.58 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 42 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -66.47 368.37 1.53 -64.94 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.16 Total: 16.59 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 3.92 Total: -41.76 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -3.04 Total: -77.91 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -1.53 Total: -8.97 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.47 1.53 -64.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721168008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.378 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds