Wall clock time and date at job start Mon Mar 30 2020 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53892 * 113.58789 * 249.21587 * 4 3 2 6 6 C 1.53422 * 86.82654 * 220.45432 * 5 4 3 7 7 C 1.52463 * 128.60847 * 165.09506 * 6 5 4 8 8 C 1.52457 * 128.52356 * 245.01467 * 6 5 4 9 9 H 1.08997 * 117.51488 * 134.90658 * 8 6 5 10 10 N 1.46900 * 117.51230 * 349.80689 * 8 6 5 11 11 C 1.46897 * 111.00079 * 155.00079 * 10 8 6 12 12 C 1.53004 * 109.47010 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.46940 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47008 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46990 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00052 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99576 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00123 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99509 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47193 * 59.99626 * 19 17 15 21 21 H 1.48500 * 109.46811 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47045 * 299.99589 * 19 17 15 23 23 C 1.53261 * 87.71812 * 25.01988 * 6 5 4 24 24 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.08998 * 112.83503 * 20.33065 * 4 3 2 30 30 H 1.08994 * 113.64575 * 334.92927 * 5 4 3 31 31 H 1.09007 * 113.64417 * 105.93174 * 5 4 3 32 32 H 1.08992 * 117.51504 * 224.96805 * 7 6 5 33 33 H 1.09002 * 117.51069 * 10.06558 * 7 6 5 34 34 H 1.00906 * 110.99897 * 278.95012 * 10 8 6 35 35 H 1.09004 * 109.47053 * 299.99648 * 11 10 8 36 36 H 1.09002 * 109.47545 * 59.99786 * 11 10 8 37 37 H 1.08997 * 109.47319 * 299.99560 * 12 11 10 38 38 H 1.08994 * 109.47278 * 60.00193 * 12 11 10 39 39 H 1.08997 * 109.46851 * 299.99964 * 13 12 11 40 40 H 1.08994 * 109.46882 * 60.00067 * 13 12 11 41 41 H 1.09004 * 109.47003 * 299.99932 * 14 13 12 42 42 H 1.09002 * 109.46997 * 59.99703 * 14 13 12 43 43 H 0.97001 * 119.99653 * 180.02562 * 18 17 15 44 44 H 1.09004 * 113.64453 * 220.48440 * 23 6 5 45 45 H 1.08993 * 113.64804 * 89.47873 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 4.0057 2.0075 1.3178 6 6 4.9782 2.8231 0.4560 7 6 5.8514 4.0040 0.8653 8 6 6.4958 2.7070 0.3682 9 1 6.9450 2.7163 -0.6249 10 7 7.1702 1.8602 1.3613 11 6 8.4543 1.3661 0.8468 12 6 9.1256 0.4907 1.9069 13 6 10.4629 -0.0245 1.3708 14 6 11.1339 -0.9004 2.4306 15 6 12.4507 -1.4083 1.9023 16 1 12.7762 -1.1341 0.9097 17 6 13.2394 -2.2239 2.6858 18 7 12.8428 -2.5581 3.8943 19 14 14.8720 -2.8528 2.0312 20 1 15.7535 -1.7015 1.7108 21 1 15.5232 -3.7031 3.0598 22 1 14.6373 -3.6534 0.8027 23 6 3.9465 2.7439 -0.6746 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.9267 0.5546 -0.3499 30 1 3.3015 2.6198 1.8810 31 1 4.4935 1.2491 1.9303 32 1 5.8767 4.8663 0.1992 33 1 5.9279 4.2287 1.9292 34 1 7.2956 2.3541 2.2322 35 1 8.2825 0.7781 -0.0548 36 1 9.1010 2.2115 0.6115 37 1 9.2976 1.0790 2.8083 38 1 8.4792 -0.3547 2.1426 39 1 10.2906 -0.6129 0.4696 40 1 11.1095 0.8206 1.1348 41 1 11.3062 -0.3123 3.3321 42 1 10.4870 -1.7455 2.6662 43 1 13.3978 -3.1316 4.4456 44 1 4.3870 2.5750 -1.6573 45 1 3.2259 3.5615 -0.6669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721168010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:02 Heat of formation + Delta-G solvation = -24.088333 kcal Electronic energy + Delta-G solvation = -19547.238442 eV Core-core repulsion = 16565.323308 eV Total energy + Delta-G solvation = -2981.915134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04175 -37.74475 -35.99990 -34.18108 -32.73693 -31.38379 -30.58919 -27.74656 -25.92254 -24.29680 -23.15400 -22.37260 -21.80682 -21.43355 -20.00452 -18.36391 -17.08360 -16.22761 -16.00296 -15.74436 -15.44475 -15.36611 -14.50000 -14.40704 -14.08021 -13.49255 -13.15854 -12.82123 -12.74531 -12.51583 -12.41243 -12.29760 -11.89081 -11.68201 -11.53614 -11.51315 -11.24362 -11.06661 -10.81888 -10.58011 -10.53862 -10.44933 -10.40946 -9.82176 -9.62749 -9.56458 -9.24454 -9.00330 -8.32164 -8.23607 -5.97152 -3.99457 3.34417 3.36025 3.38624 3.41155 3.66449 3.93435 4.38417 4.47828 4.56231 4.59019 4.75593 4.81103 4.83017 4.91411 5.09907 5.15917 5.33056 5.38144 5.39599 5.43382 5.53322 5.55407 5.60640 5.62726 5.63908 5.73887 5.80098 5.89005 5.98837 6.00248 6.14761 6.15297 6.26195 6.50328 6.81982 6.95964 7.04047 7.10283 7.22605 7.35696 7.71285 7.87278 8.03790 8.46500 9.07835 9.64229 11.14158 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.002508 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.768200 B =11160.731564 C =11845.615821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.069 3.931 5 C -0.108 4.108 6 C -0.152 4.152 7 C -0.185 4.185 8 C 0.059 3.941 9 H 0.109 0.891 10 N -0.659 5.659 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.094 4.094 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.343 0.657 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.070 0.930 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.787 10.662 -7.979 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.299 6.299 4 C 0.011 3.989 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.224 4.224 8 C -0.053 4.053 9 H 0.127 0.873 10 N -0.288 5.288 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.131 4.131 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.176 10.121 -7.988 25.652 hybrid contribution 1.645 0.202 -0.194 1.669 sum -20.531 10.323 -8.182 24.393 Atomic orbital electron populations 1.21748 0.93970 1.02177 1.02948 1.22495 0.95381 0.84081 1.00183 1.87911 1.21015 1.26243 1.94687 1.23525 0.80373 0.97840 0.97174 1.22904 0.96177 0.98916 0.96618 1.22151 0.91861 1.01634 0.99687 1.23362 1.04790 0.92406 1.01821 1.22300 0.91792 0.94230 0.96934 0.87307 1.60130 1.23659 1.39743 1.05264 1.22132 0.87803 0.97715 0.99065 1.21645 0.97575 0.98958 0.97215 1.21587 0.93686 0.99292 1.00115 1.19088 0.94817 0.94222 0.93463 1.21251 1.04171 1.29607 1.00881 0.92824 1.25040 0.98177 0.96402 0.94949 1.69959 1.38028 1.36656 1.08917 0.86663 0.83968 0.78839 0.78550 1.20288 1.21301 1.20259 1.22715 0.96042 0.97619 0.96750 0.92009 0.91193 0.91929 0.93242 0.93438 0.89361 0.89641 0.90206 0.88683 0.88509 0.83747 0.91159 0.95228 0.92699 0.91665 0.93433 0.93638 0.96737 0.96625 0.92988 0.91154 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.67 16 2 C 0.06 0.48 6.50 37.16 0.24 0.72 16 3 O -0.38 -4.09 10.35 -35.23 -0.36 -4.45 16 4 C 0.07 0.70 4.29 -25.81 -0.11 0.59 16 5 C -0.11 -1.14 7.92 -26.05 -0.21 -1.34 16 6 C -0.15 -1.53 3.02 -154.71 -0.47 -1.99 16 7 C -0.19 -1.73 10.23 -26.94 -0.28 -2.00 16 8 C 0.06 0.63 6.31 -67.93 -0.43 0.20 16 9 H 0.11 1.14 7.90 -51.93 -0.41 0.73 16 10 N -0.66 -8.13 6.76 -106.95 -0.72 -8.85 16 11 C 0.06 0.85 5.54 -3.82 -0.02 0.83 16 12 C -0.12 -1.96 5.48 -26.72 -0.15 -2.11 16 13 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.09 -0.88 7.93 -26.13 -0.21 -1.09 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.34 4.02 8.52 -39.29 -0.33 3.68 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -30.53 368.46 -10.47 -41.00 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.73 Total: -0.85 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.93 Total: -22.66 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.01 Total: -35.47 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.36 Total: -4.45 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.53 -10.47 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721168010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.911 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds