Wall clock time and date at job start Mon Mar 30 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53892 * 113.58789 * 249.21587 * 4 3 2 6 6 C 1.53422 * 86.82654 * 220.45432 * 5 4 3 7 7 C 1.52463 * 128.60847 * 165.09506 * 6 5 4 8 8 C 1.52457 * 128.52356 * 245.01467 * 6 5 4 9 9 H 1.08997 * 117.51488 * 134.90658 * 8 6 5 10 10 N 1.46900 * 117.51230 * 349.80689 * 8 6 5 11 11 C 1.46897 * 111.00079 * 155.00079 * 10 8 6 12 12 C 1.53004 * 109.47010 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.46940 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47008 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46990 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00052 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99576 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00123 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99509 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47193 * 59.99626 * 19 17 15 21 21 H 1.48500 * 109.46811 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47045 * 299.99589 * 19 17 15 23 23 C 1.53261 * 87.71812 * 25.01988 * 6 5 4 24 24 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.08998 * 112.83503 * 20.33065 * 4 3 2 30 30 H 1.08994 * 113.64575 * 334.92927 * 5 4 3 31 31 H 1.09007 * 113.64417 * 105.93174 * 5 4 3 32 32 H 1.08992 * 117.51504 * 224.96805 * 7 6 5 33 33 H 1.09002 * 117.51069 * 10.06558 * 7 6 5 34 34 H 1.00906 * 110.99897 * 278.95012 * 10 8 6 35 35 H 1.09004 * 109.47053 * 299.99648 * 11 10 8 36 36 H 1.09002 * 109.47545 * 59.99786 * 11 10 8 37 37 H 1.08997 * 109.47319 * 299.99560 * 12 11 10 38 38 H 1.08994 * 109.47278 * 60.00193 * 12 11 10 39 39 H 1.08997 * 109.46851 * 299.99964 * 13 12 11 40 40 H 1.08994 * 109.46882 * 60.00067 * 13 12 11 41 41 H 1.09004 * 109.47003 * 299.99932 * 14 13 12 42 42 H 1.09002 * 109.46997 * 59.99703 * 14 13 12 43 43 H 0.97001 * 119.99653 * 180.02562 * 18 17 15 44 44 H 1.09004 * 113.64453 * 220.48440 * 23 6 5 45 45 H 1.08993 * 113.64804 * 89.47873 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 4.0057 2.0075 1.3178 6 6 4.9782 2.8231 0.4560 7 6 5.8514 4.0040 0.8653 8 6 6.4958 2.7070 0.3682 9 1 6.9450 2.7163 -0.6249 10 7 7.1702 1.8602 1.3613 11 6 8.4543 1.3661 0.8468 12 6 9.1256 0.4907 1.9069 13 6 10.4629 -0.0245 1.3708 14 6 11.1339 -0.9004 2.4306 15 6 12.4507 -1.4083 1.9023 16 1 12.7762 -1.1341 0.9097 17 6 13.2394 -2.2239 2.6858 18 7 12.8428 -2.5581 3.8943 19 14 14.8720 -2.8528 2.0312 20 1 15.7535 -1.7015 1.7108 21 1 15.5232 -3.7031 3.0598 22 1 14.6373 -3.6534 0.8027 23 6 3.9465 2.7439 -0.6746 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.9267 0.5546 -0.3499 30 1 3.3015 2.6198 1.8810 31 1 4.4935 1.2491 1.9303 32 1 5.8767 4.8663 0.1992 33 1 5.9279 4.2287 1.9292 34 1 7.2956 2.3541 2.2322 35 1 8.2825 0.7781 -0.0548 36 1 9.1010 2.2115 0.6115 37 1 9.2976 1.0790 2.8083 38 1 8.4792 -0.3547 2.1426 39 1 10.2906 -0.6129 0.4696 40 1 11.1095 0.8206 1.1348 41 1 11.3062 -0.3123 3.3321 42 1 10.4870 -1.7455 2.6662 43 1 13.3978 -3.1316 4.4456 44 1 4.3870 2.5750 -1.6573 45 1 3.2259 3.5615 -0.6669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721168010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:01 Heat of formation + Delta-G solvation = -41.568253 kcal Electronic energy + Delta-G solvation = -19547.996428 eV Core-core repulsion = 16565.323308 eV Total energy + Delta-G solvation = -2982.673120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83350 -38.57867 -37.23698 -35.68579 -34.30939 -32.67131 -31.41390 -29.41776 -26.73520 -26.07351 -23.80110 -23.19505 -22.98135 -22.64356 -21.65372 -19.19713 -18.41000 -17.83304 -16.85407 -16.75626 -16.52797 -16.41963 -16.18694 -15.55646 -15.01917 -14.55104 -14.31624 -14.26769 -13.75200 -13.64845 -13.37266 -13.25075 -13.17131 -13.01055 -12.81148 -12.61278 -12.40772 -12.28026 -12.20223 -12.11770 -11.98763 -11.57363 -11.34560 -11.32701 -11.30530 -11.07244 -10.55123 -10.53943 -10.32658 -9.16638 -8.19904 -6.31498 1.39390 1.42881 1.50845 2.40784 2.60792 2.85149 3.09905 3.12645 3.59727 3.76075 3.82582 3.94034 4.02508 4.11353 4.18130 4.21418 4.26980 4.42433 4.45637 4.51137 4.60079 4.69952 4.79978 4.83563 4.84595 4.86592 4.91186 4.92155 5.00715 5.03966 5.17606 5.18834 5.24384 5.28594 5.29391 5.35820 5.37628 5.55008 5.77901 5.86829 6.11318 6.25589 6.35913 6.40577 6.86045 7.37733 8.91772 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.002508 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.768200 B =11160.731564 C =11845.615821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.394 6.394 4 C 0.066 3.934 5 C -0.109 4.109 6 C -0.154 4.154 7 C -0.172 4.172 8 C 0.048 3.952 9 H 0.115 0.885 10 N -0.665 5.665 11 C 0.075 3.925 12 C -0.106 4.106 13 C -0.096 4.096 14 C 0.022 3.978 15 C -0.545 4.545 16 H 0.061 0.939 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.266 1.266 23 C -0.087 4.087 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.346 0.654 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.052 0.948 41 H -0.011 1.011 42 H -0.012 1.012 43 H 0.264 0.736 44 H 0.079 0.921 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.754 11.442 -9.498 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.314 6.314 4 C 0.008 3.992 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.211 4.211 8 C -0.063 4.063 9 H 0.133 0.867 10 N -0.295 5.295 11 C -0.054 4.054 12 C -0.144 4.144 13 C -0.135 4.135 14 C -0.015 4.015 15 C -0.583 4.583 16 H 0.079 0.921 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.191 1.191 23 C -0.124 4.124 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.008 0.992 42 H 0.006 0.994 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.160 10.914 -9.518 26.472 hybrid contribution 1.583 -0.058 0.329 1.618 sum -20.577 10.856 -9.189 25.014 Atomic orbital electron populations 1.21755 0.92741 1.03277 1.02755 1.22671 0.96460 0.83303 1.00431 1.87892 1.21217 1.27504 1.94750 1.23552 0.80304 0.98208 0.97089 1.22871 0.96398 0.98740 0.96682 1.22160 0.91506 1.02069 0.99831 1.23417 1.03088 0.92263 1.02287 1.22349 0.91977 0.95122 0.96832 0.86704 1.60053 1.22785 1.40789 1.05893 1.21878 0.88479 0.97380 0.97647 1.21462 0.95657 0.99101 0.98148 1.21391 0.95234 0.98486 0.98352 1.19025 0.94367 0.93862 0.94223 1.21722 1.05279 1.29969 1.01352 0.92121 1.26042 1.02444 0.96551 0.95130 1.70101 1.39728 1.37331 1.10338 0.85478 0.78804 0.78505 0.78127 1.19074 1.20833 1.19102 1.22681 0.95713 0.97156 0.96888 0.91982 0.89476 0.92297 0.93403 0.92793 0.89618 0.89711 0.91642 0.87151 0.88296 0.83433 0.91010 0.94352 0.92804 0.92818 0.93055 0.92966 0.99229 0.99362 0.92779 0.90258 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.79 6.50 71.98 0.47 1.26 16 3 O -0.39 -8.24 10.35 -148.98 -1.54 -9.78 16 4 C 0.07 1.30 4.29 31.19 0.13 1.43 16 5 C -0.11 -2.23 7.92 31.04 0.25 -1.98 16 6 C -0.15 -2.87 3.02 -52.31 -0.16 -3.02 16 7 C -0.17 -2.83 10.23 30.46 0.31 -2.52 16 8 C 0.05 0.94 6.31 44.78 0.28 1.22 16 9 H 0.12 2.13 7.90 -2.39 -0.02 2.11 16 10 N -0.67 -15.60 6.76 -492.29 -3.33 -18.93 16 11 C 0.07 1.97 5.54 86.31 0.48 2.45 16 12 C -0.11 -3.55 5.48 30.60 0.17 -3.38 16 13 C -0.10 -3.97 5.15 30.60 0.16 -3.81 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 18 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 19 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C -0.09 -1.50 7.93 30.98 0.25 -1.25 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.70 7.88 -2.39 -0.02 1.68 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.60 8.09 -2.39 -0.02 1.59 16 34 H 0.35 7.71 8.52 -89.69 -0.76 6.94 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 42 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -65.31 368.46 1.51 -63.80 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.16 Total: 16.54 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 3.92 Total: -40.67 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.04 Total: -76.67 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.54 Total: -9.78 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.31 1.51 -63.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721168010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.230 kcal (2) G-P(sol) polarization free energy of solvation -65.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds