Wall clock time and date at job start Mon Mar 30 2020 07:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99779 * 2 1 4 4 C 1.53001 * 109.47074 * 66.04851 * 3 2 1 5 5 O 1.42898 * 109.47227 * 64.99850 * 4 3 2 6 6 C 1.42901 * 113.99663 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46940 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00176 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00168 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99756 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47231 * 59.99968 * 11 9 7 13 13 H 1.48496 * 109.46939 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47123 * 299.99526 * 11 9 7 15 15 C 1.46900 * 111.00317 * 236.04851 * 2 1 3 16 16 C 1.52951 * 109.41040 * 303.95772 * 15 2 1 17 17 C 1.53179 * 109.44734 * 176.97943 * 16 15 2 18 18 C 1.53147 * 108.88655 * 56.56620 * 17 16 15 19 19 C 1.52841 * 117.67569 * 91.49469 * 18 17 16 20 20 C 1.52806 * 117.74825 * 160.37823 * 18 17 16 21 21 C 1.53147 * 115.00654 * 306.06267 * 18 17 16 22 22 C 1.52934 * 109.35601 * 183.63450 * 15 2 1 23 23 H 1.08994 * 109.47015 * 183.94901 * 1 2 3 24 24 H 1.08999 * 109.47045 * 303.95566 * 1 2 3 25 25 H 1.08998 * 109.46972 * 63.95455 * 1 2 3 26 26 H 1.09001 * 109.47150 * 186.04603 * 3 2 1 27 27 H 1.08992 * 109.47205 * 306.04602 * 3 2 1 28 28 H 1.09003 * 109.47030 * 184.99705 * 4 3 2 29 29 H 1.08998 * 109.47050 * 304.99526 * 4 3 2 30 30 H 1.08997 * 109.47244 * 299.99472 * 6 5 4 31 31 H 1.08998 * 109.47330 * 60.00129 * 6 5 4 32 32 H 0.97002 * 119.99789 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.41249 * 63.80592 * 15 2 1 34 34 H 1.08998 * 109.47971 * 56.97632 * 16 15 2 35 35 H 1.09004 * 109.46635 * 296.96822 * 16 15 2 36 36 H 1.09001 * 109.56649 * 296.74231 * 17 16 15 37 37 H 1.08999 * 109.56825 * 176.39267 * 17 16 15 38 38 H 1.09002 * 117.50783 * 0.27023 * 19 18 17 39 39 H 1.09008 * 117.50386 * 215.22396 * 19 18 17 40 40 H 1.09001 * 117.50504 * 144.89350 * 20 18 17 41 41 H 1.09001 * 117.52712 * 359.83898 * 20 18 17 42 42 H 1.08996 * 109.57213 * 173.75440 * 21 18 17 43 43 H 1.08998 * 109.56916 * 294.11313 * 21 18 17 44 44 H 1.09005 * 109.47136 * 303.04426 * 22 15 2 45 45 H 1.08995 * 109.47675 * 63.05731 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 8 2.2956 1.3976 2.3979 6 6 2.0213 1.9628 3.6814 7 6 2.7687 1.1927 4.7395 8 1 3.3905 0.3552 4.4598 9 6 2.6577 1.5568 6.0647 10 7 1.9001 2.5764 6.4053 11 14 3.5847 0.6026 7.3761 12 1 5.0427 0.6768 7.1046 13 1 3.2996 1.1899 8.7099 14 1 3.1490 -0.8168 7.3564 15 6 1.9956 -0.7659 -1.1376 16 6 1.4255 -2.1848 -1.1025 17 6 1.9140 -2.9611 -2.3293 18 6 3.4453 -2.9433 -2.3498 19 6 4.1780 -4.0931 -1.6590 20 6 4.1580 -4.0047 -3.1867 21 6 4.0775 -1.5503 -2.2760 22 6 3.5216 -0.8178 -1.0509 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3445 -0.1082 27 1 1.5611 1.9273 -0.8308 28 1 1.9439 3.1011 1.2831 29 1 0.5532 2.0058 1.4691 30 1 2.3415 3.0046 3.6955 31 1 0.9511 1.9088 3.8810 32 1 1.8223 2.8327 7.3376 33 1 1.7018 -0.2804 -2.0683 34 1 0.3365 -2.1393 -1.1111 35 1 1.7610 -2.6888 -0.1961 36 1 1.5312 -2.4910 -3.2351 37 1 1.5616 -3.9911 -2.2737 38 1 3.5708 -4.8683 -1.1916 39 1 5.1155 -3.8611 -1.1535 40 1 5.0824 -3.7148 -3.6862 41 1 3.5382 -4.7222 -3.7243 42 1 5.1595 -1.6448 -2.1849 43 1 3.8329 -0.9901 -3.1784 44 1 3.9186 0.1970 -1.0231 45 1 3.8163 -1.3484 -0.1456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723416403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:30 Heat of formation + Delta-G solvation = -31.124517 kcal Electronic energy + Delta-G solvation = -20977.462510 eV Core-core repulsion = 17995.242265 eV Total energy + Delta-G solvation = -2982.220245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79743 -37.70893 -36.14913 -33.36667 -32.53710 -31.23504 -29.17706 -27.23443 -26.81718 -24.63919 -22.71308 -22.48587 -22.21593 -21.27380 -19.96408 -18.70501 -16.41658 -16.26246 -15.57330 -15.44247 -15.13730 -14.73663 -14.31153 -14.15746 -13.90313 -13.63753 -13.26852 -12.85465 -12.80086 -12.52449 -12.26815 -11.97522 -11.75517 -11.64025 -11.47383 -11.23943 -11.12645 -11.00203 -10.81021 -10.72138 -10.66825 -10.27771 -10.03415 -9.90818 -9.88157 -9.67500 -9.02078 -8.71263 -8.06460 -7.95183 -6.04000 -4.04705 3.37082 3.39097 3.43642 3.62186 4.08442 4.41295 4.44758 4.63371 4.76072 4.86751 4.91780 5.00937 5.16658 5.29656 5.32385 5.40622 5.44835 5.46117 5.50912 5.55156 5.62509 5.70908 5.74024 5.79309 5.82612 5.83520 5.87894 5.95545 6.01105 6.04588 6.12509 6.22111 6.26395 6.27535 6.32325 6.44642 6.51797 7.18615 7.36586 7.39399 7.51969 7.87887 8.24951 8.70937 9.10281 9.59906 11.07747 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.003995 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.087014 B = 7007.565019 C = 7765.890999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.524 5.524 3 C 0.056 3.944 4 C 0.067 3.933 5 O -0.379 6.379 6 C 0.195 3.805 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.091 3.909 16 C -0.112 4.112 17 C -0.078 4.078 18 C -0.119 4.119 19 C -0.172 4.172 20 C -0.181 4.181 21 C -0.079 4.079 22 C -0.112 4.112 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.085 0.915 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.001 0.999 31 H 0.002 0.998 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -8.975 -20.132 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.247 5.247 3 C -0.071 4.071 4 C -0.012 4.012 5 O -0.298 6.298 6 C 0.120 3.880 7 C -0.548 4.548 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.017 4.017 16 C -0.149 4.149 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.209 4.209 20 C -0.218 4.218 21 C -0.117 4.117 22 C -0.150 4.150 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.035 0.965 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.392 -9.247 -19.548 21.628 hybrid contribution -0.095 0.284 0.110 0.319 sum 0.297 -8.963 -19.437 21.406 Atomic orbital electron populations 1.22473 0.87963 1.02178 1.00084 1.61875 1.07205 1.13515 1.42151 1.22229 1.01232 0.88075 0.95597 1.22263 0.96122 0.94484 0.88291 1.87947 1.69560 1.56870 1.15440 1.20155 0.95507 0.93448 0.78879 1.21036 1.28111 1.15205 0.90429 0.91583 1.24943 0.95729 0.95418 0.98469 1.69961 1.39146 1.27066 1.17919 0.86411 0.80152 0.80011 0.79990 1.20060 1.21245 1.20020 1.21540 0.95095 0.93910 0.91193 1.21634 0.99904 0.94840 0.98568 1.21124 0.92083 1.00114 0.98283 1.21498 0.94416 0.91429 1.04596 1.23008 1.02448 1.00834 0.94573 1.22985 1.02453 1.02360 0.93999 1.21138 0.99096 0.93093 0.98337 1.21630 0.94188 1.00659 0.98497 0.91264 0.90890 0.96522 0.89716 0.94703 0.94519 0.94619 0.98105 0.98016 0.92725 0.95071 0.91782 0.90682 0.91900 0.91841 0.88949 0.88825 0.89094 0.89155 0.91731 0.91932 0.91527 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.92 60.07 0.54 0.83 16 2 N -0.52 -8.14 4.58 -234.96 -1.08 -9.22 16 3 C 0.06 0.89 5.16 -3.82 -0.02 0.87 16 4 C 0.07 1.28 6.00 37.16 0.22 1.51 16 5 O -0.38 -9.47 10.27 -35.23 -0.36 -9.84 16 6 C 0.19 5.50 5.69 36.01 0.20 5.71 16 7 C -0.51 -15.41 9.43 -34.44 -0.32 -15.74 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 11 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.09 1.16 1.86 -67.77 -0.13 1.03 16 16 C -0.11 -1.29 4.95 -26.66 -0.13 -1.42 16 17 C -0.08 -0.76 5.67 -26.56 -0.15 -0.91 16 18 C -0.12 -1.17 1.97 -154.54 -0.31 -1.48 16 19 C -0.17 -1.66 9.93 -26.79 -0.27 -1.92 16 20 C -0.18 -1.56 9.99 -26.81 -0.27 -1.83 16 21 C -0.08 -0.81 5.67 -26.56 -0.15 -0.96 16 22 C -0.11 -1.41 5.08 -26.67 -0.14 -1.55 16 23 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 24 H 0.07 1.12 6.21 -51.93 -0.32 0.79 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.08 1.34 5.75 -51.93 -0.30 1.04 16 27 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.67 6.26 -51.93 -0.33 0.35 16 30 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.70 6.17 -51.93 -0.32 0.38 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.85 6.03 -51.93 -0.31 0.54 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -31.67 347.62 -9.70 -41.36 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -8.20 Total: -3.73 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -1.01 Total: -14.33 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.34 Total: -36.00 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.36 Total: -9.84 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.67 -9.70 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723416403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.239 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds