Wall clock time and date at job start Mon Mar 30 2020 07:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99779 * 2 1 4 4 C 1.53001 * 109.47074 * 66.04851 * 3 2 1 5 5 O 1.42898 * 109.47227 * 64.99850 * 4 3 2 6 6 C 1.42901 * 113.99663 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46940 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00176 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00168 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99756 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47231 * 59.99968 * 11 9 7 13 13 H 1.48496 * 109.46939 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47123 * 299.99526 * 11 9 7 15 15 C 1.46900 * 111.00317 * 236.04851 * 2 1 3 16 16 C 1.52951 * 109.41040 * 303.95772 * 15 2 1 17 17 C 1.53179 * 109.44734 * 176.97943 * 16 15 2 18 18 C 1.53147 * 108.88655 * 56.56620 * 17 16 15 19 19 C 1.52841 * 117.67569 * 91.49469 * 18 17 16 20 20 C 1.52806 * 117.74825 * 160.37823 * 18 17 16 21 21 C 1.53147 * 115.00654 * 306.06267 * 18 17 16 22 22 C 1.52934 * 109.35601 * 183.63450 * 15 2 1 23 23 H 1.08994 * 109.47015 * 183.94901 * 1 2 3 24 24 H 1.08999 * 109.47045 * 303.95566 * 1 2 3 25 25 H 1.08998 * 109.46972 * 63.95455 * 1 2 3 26 26 H 1.09001 * 109.47150 * 186.04603 * 3 2 1 27 27 H 1.08992 * 109.47205 * 306.04602 * 3 2 1 28 28 H 1.09003 * 109.47030 * 184.99705 * 4 3 2 29 29 H 1.08998 * 109.47050 * 304.99526 * 4 3 2 30 30 H 1.08997 * 109.47244 * 299.99472 * 6 5 4 31 31 H 1.08998 * 109.47330 * 60.00129 * 6 5 4 32 32 H 0.97002 * 119.99789 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.41249 * 63.80592 * 15 2 1 34 34 H 1.08998 * 109.47971 * 56.97632 * 16 15 2 35 35 H 1.09004 * 109.46635 * 296.96822 * 16 15 2 36 36 H 1.09001 * 109.56649 * 296.74231 * 17 16 15 37 37 H 1.08999 * 109.56825 * 176.39267 * 17 16 15 38 38 H 1.09002 * 117.50783 * 0.27023 * 19 18 17 39 39 H 1.09008 * 117.50386 * 215.22396 * 19 18 17 40 40 H 1.09001 * 117.50504 * 144.89350 * 20 18 17 41 41 H 1.09001 * 117.52712 * 359.83898 * 20 18 17 42 42 H 1.08996 * 109.57213 * 173.75440 * 21 18 17 43 43 H 1.08998 * 109.56916 * 294.11313 * 21 18 17 44 44 H 1.09005 * 109.47136 * 303.04426 * 22 15 2 45 45 H 1.08995 * 109.47675 * 63.05731 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 8 2.2956 1.3976 2.3979 6 6 2.0213 1.9628 3.6814 7 6 2.7687 1.1927 4.7395 8 1 3.3905 0.3552 4.4598 9 6 2.6577 1.5568 6.0647 10 7 1.9001 2.5764 6.4053 11 14 3.5847 0.6026 7.3761 12 1 5.0427 0.6768 7.1046 13 1 3.2996 1.1899 8.7099 14 1 3.1490 -0.8168 7.3564 15 6 1.9956 -0.7659 -1.1376 16 6 1.4255 -2.1848 -1.1025 17 6 1.9140 -2.9611 -2.3293 18 6 3.4453 -2.9433 -2.3498 19 6 4.1780 -4.0931 -1.6590 20 6 4.1580 -4.0047 -3.1867 21 6 4.0775 -1.5503 -2.2760 22 6 3.5216 -0.8178 -1.0509 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3445 -0.1082 27 1 1.5611 1.9273 -0.8308 28 1 1.9439 3.1011 1.2831 29 1 0.5532 2.0058 1.4691 30 1 2.3415 3.0046 3.6955 31 1 0.9511 1.9088 3.8810 32 1 1.8223 2.8327 7.3376 33 1 1.7018 -0.2804 -2.0683 34 1 0.3365 -2.1393 -1.1111 35 1 1.7610 -2.6888 -0.1961 36 1 1.5312 -2.4910 -3.2351 37 1 1.5616 -3.9911 -2.2737 38 1 3.5708 -4.8683 -1.1916 39 1 5.1155 -3.8611 -1.1535 40 1 5.0824 -3.7148 -3.6862 41 1 3.5382 -4.7222 -3.7243 42 1 5.1595 -1.6448 -2.1849 43 1 3.8329 -0.9901 -3.1784 44 1 3.9186 0.1970 -1.0231 45 1 3.8163 -1.3484 -0.1456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723416403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:29 Heat of formation + Delta-G solvation = -50.187778 kcal Electronic energy + Delta-G solvation = -20978.289155 eV Core-core repulsion = 17995.242265 eV Total energy + Delta-G solvation = -2983.046891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71927 -38.99804 -37.75356 -34.99060 -34.20628 -32.16651 -30.67807 -28.86455 -28.20091 -25.84039 -24.45972 -23.60816 -23.24256 -22.48003 -21.05250 -19.54354 -18.60376 -17.58571 -17.38828 -16.46718 -16.26051 -16.19596 -15.81535 -15.57959 -15.20156 -14.85175 -14.39720 -14.26016 -13.83951 -13.64238 -13.52229 -13.41479 -13.03536 -12.92105 -12.73570 -12.67802 -12.50827 -12.29938 -12.25156 -12.14492 -11.90566 -11.70683 -11.56551 -11.24205 -10.89407 -10.81896 -10.77720 -10.43796 -10.15811 -9.09526 -8.31114 -6.43138 1.39384 1.44651 1.52981 2.35611 2.81848 3.02348 3.04307 3.26102 3.63745 3.82435 3.96478 4.05259 4.09604 4.16834 4.24957 4.27642 4.44290 4.47524 4.48749 4.53757 4.59994 4.62397 4.69302 4.82413 4.83816 4.84447 4.90345 4.94024 4.99200 5.01653 5.08421 5.14680 5.16412 5.20892 5.30029 5.33490 5.34657 5.49459 5.52961 5.56146 5.98458 6.19361 6.31036 6.58215 6.87615 7.29146 8.81215 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.003995 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.087014 B = 7007.565019 C = 7765.890999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.065 3.935 4 C 0.057 3.943 5 O -0.394 6.394 6 C 0.210 3.790 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.983 3.017 12 H -0.265 1.265 13 H -0.273 1.273 14 H -0.266 1.266 15 C 0.094 3.906 16 C -0.108 4.108 17 C -0.072 4.072 18 C -0.130 4.130 19 C -0.185 4.185 20 C -0.163 4.163 21 C -0.073 4.073 22 C -0.110 4.110 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.038 0.962 30 H -0.017 1.017 31 H -0.019 1.019 32 H 0.271 0.729 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -10.027 -21.432 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.062 4.062 4 C -0.021 4.021 5 O -0.314 6.314 6 C 0.135 3.865 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.805 3.195 12 H -0.190 1.190 13 H -0.198 1.198 14 H -0.191 1.191 15 C -0.014 4.014 16 C -0.146 4.146 17 C -0.110 4.110 18 C -0.130 4.130 19 C -0.222 4.222 20 C -0.200 4.200 21 C -0.111 4.111 22 C -0.147 4.147 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.001 0.999 31 H -0.002 1.002 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.717 -10.298 -20.877 23.290 hybrid contribution -0.241 0.651 0.469 0.838 sum 0.476 -9.647 -20.408 22.578 Atomic orbital electron populations 1.22435 0.87182 1.02588 1.00211 1.61827 1.08232 1.13541 1.44239 1.22118 1.01364 0.88674 0.94068 1.22618 0.96000 0.95221 0.88213 1.87906 1.70465 1.57624 1.15373 1.19765 0.93805 0.92371 0.80535 1.21350 1.29268 1.15870 0.91890 0.92271 1.25959 0.96271 0.96237 1.00714 1.70067 1.39875 1.28204 1.18974 0.85248 0.78887 0.78577 0.76782 1.18972 1.19805 1.19123 1.21581 0.94901 0.94224 0.90651 1.21591 1.00248 0.94119 0.98597 1.21095 0.91895 1.00401 0.97611 1.21537 0.94628 0.91279 1.05584 1.23041 1.02313 1.01095 0.95783 1.23041 1.02552 1.01351 0.93087 1.21088 0.99176 0.93321 0.97477 1.21584 0.94459 1.00248 0.98458 0.90441 0.93012 0.94312 0.89979 0.91612 0.93722 0.94376 0.99938 1.00176 0.92055 0.93610 0.91089 0.93083 0.90615 0.90932 0.89006 0.89504 0.88294 0.87927 0.91475 0.90615 0.92078 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 8.92 127.69 1.14 1.77 16 2 N -0.55 -16.96 4.58 -897.27 -4.11 -21.07 16 3 C 0.07 2.01 5.16 86.30 0.44 2.46 16 4 C 0.06 2.22 6.00 71.98 0.43 2.66 16 5 O -0.39 -20.37 10.27 -148.98 -1.53 -21.90 16 6 C 0.21 12.38 5.69 71.24 0.41 12.79 16 7 C -0.55 -33.86 9.43 25.60 0.24 -33.62 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.01 0.38 5.46 84.65 0.46 0.84 16 10 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 11 Si 0.98 45.64 29.54 68.60 2.03 47.67 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 C 0.09 2.29 1.86 44.88 0.08 2.37 16 16 C -0.11 -2.37 4.95 30.64 0.15 -2.22 16 17 C -0.07 -1.24 5.67 30.70 0.17 -1.07 16 18 C -0.13 -2.33 1.97 -52.20 -0.10 -2.43 16 19 C -0.19 -3.40 9.93 30.55 0.30 -3.10 16 20 C -0.16 -2.42 9.99 30.54 0.31 -2.12 16 21 C -0.07 -1.38 5.67 30.70 0.17 -1.21 16 22 C -0.11 -2.73 5.08 30.63 0.16 -2.57 16 23 H 0.08 1.92 6.16 -2.39 -0.01 1.91 16 24 H 0.05 1.59 6.21 -2.39 -0.01 1.58 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 2.57 5.75 -2.39 -0.01 2.55 16 27 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.47 6.26 -2.39 -0.01 1.46 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 34 H 0.07 1.44 6.17 -2.39 -0.01 1.43 16 35 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 1.55 6.03 -2.38 -0.01 1.54 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.70 347.62 1.97 -66.73 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.93 Total: 11.18 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.37 Total: -25.44 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -3.82 Total: -78.24 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -1.53 Total: -21.90 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.70 1.97 -66.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723416403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.543 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds