Wall clock time and date at job start Mon Mar 30 2020 07:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99926 * 2 1 4 4 C 1.53002 * 109.47445 * 66.04323 * 3 2 1 5 5 O 1.42900 * 109.46612 * 64.99870 * 4 3 2 6 6 C 1.42905 * 113.99854 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47015 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99661 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00186 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00030 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 C 1.46898 * 110.99918 * 236.04504 * 2 1 3 16 16 H 1.09000 * 109.47364 * 178.95103 * 15 2 1 17 17 C 1.52948 * 109.47595 * 58.94626 * 15 2 1 18 18 C 1.52933 * 109.82260 * 177.02346 * 17 15 2 19 19 C 1.53178 * 109.45513 * 62.98076 * 18 17 15 20 20 C 1.53148 * 108.88207 * 303.43440 * 19 18 17 21 21 C 1.52852 * 117.67931 * 268.50933 * 20 19 18 22 22 C 1.52815 * 117.75217 * 199.62675 * 20 19 18 23 23 C 1.53144 * 115.01077 * 53.93542 * 20 19 18 24 24 H 1.09002 * 109.47065 * 60.00038 * 1 2 3 25 25 H 1.08996 * 109.46650 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47048 * 300.00439 * 1 2 3 27 27 H 1.09007 * 109.47284 * 306.04459 * 3 2 1 28 28 H 1.09003 * 109.47221 * 186.04762 * 3 2 1 29 29 H 1.08999 * 109.46924 * 305.00379 * 4 3 2 30 30 H 1.09000 * 109.47252 * 185.00051 * 4 3 2 31 31 H 1.09002 * 109.46943 * 59.99854 * 6 5 4 32 32 H 1.09000 * 109.46722 * 300.00253 * 6 5 4 33 33 H 0.97001 * 119.99697 * 359.97438 * 10 9 7 34 34 H 1.08996 * 109.40889 * 297.12829 * 17 15 2 35 35 H 1.08999 * 109.41265 * 56.91760 * 17 15 2 36 36 H 1.08999 * 109.47760 * 182.97701 * 18 17 15 37 37 H 1.09009 * 109.47766 * 302.97781 * 18 17 15 38 38 H 1.08990 * 109.57030 * 63.25479 * 19 18 17 39 39 H 1.09001 * 109.56651 * 183.49791 * 19 18 17 40 40 H 1.08999 * 117.50701 * 359.72009 * 21 20 19 41 41 H 1.08996 * 117.50416 * 144.78353 * 21 20 19 42 42 H 1.08995 * 117.50142 * 215.11415 * 22 20 19 43 43 H 1.09001 * 117.49483 * 0.12239 * 22 20 19 44 44 H 1.09002 * 109.57724 * 186.24638 * 23 20 19 45 45 H 1.08998 * 109.56610 * 65.88370 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 8 2.2956 1.3976 2.3978 6 6 2.0213 1.9629 3.6813 7 6 2.7696 1.1936 4.7392 8 1 3.3920 0.3564 4.4596 9 6 2.6596 1.5585 6.0643 10 7 1.9021 2.5782 6.4049 11 14 3.5865 0.6045 7.3758 12 1 4.9261 1.2131 7.5769 13 1 3.7443 -0.8072 6.9426 14 1 2.8262 0.6489 8.6507 15 6 1.9955 -0.7660 -1.1376 16 1 3.0849 -0.7342 -1.1241 17 6 1.4838 -0.1561 -2.4435 18 6 2.0862 -0.9018 -3.6351 19 6 1.6192 -2.3605 -3.6131 20 6 2.0093 -2.9856 -2.2705 21 6 3.3612 -3.6933 -2.1828 22 6 2.0671 -4.5102 -2.1854 23 6 1.5256 -2.2204 -1.0352 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.5611 1.9274 -0.8310 28 1 3.0798 1.3444 -0.1083 29 1 0.5532 2.0058 1.4690 30 1 1.9438 3.1012 1.2830 31 1 0.9511 1.9089 3.8809 32 1 2.3415 3.0047 3.6954 33 1 1.4211 3.0738 5.7238 34 1 0.3972 -0.2347 -2.4787 35 1 1.7718 0.8941 -2.4902 36 1 1.7599 -0.4298 -4.5619 37 1 3.1739 -0.8674 -3.5733 38 1 0.5366 -2.3992 -3.7330 39 1 2.0963 -2.9089 -4.4254 40 1 3.9750 -3.7197 -3.0832 41 1 3.9079 -3.6195 -1.2428 42 1 1.7627 -4.9739 -1.2471 43 1 1.8292 -5.0740 -3.0874 44 1 1.9422 -2.6761 -0.1370 45 1 0.4370 -2.2500 -0.9905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723424216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:14 Heat of formation + Delta-G solvation = -36.326927 kcal Electronic energy + Delta-G solvation = -21010.421894 eV Core-core repulsion = 18027.976055 eV Total energy + Delta-G solvation = -2982.445839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01695 -37.70537 -36.29191 -33.87199 -32.87350 -30.66831 -28.46832 -27.71098 -26.44413 -25.50127 -22.69685 -22.44056 -22.22349 -21.69631 -19.78897 -18.65764 -16.91894 -16.24449 -15.78250 -15.54611 -15.23378 -14.54805 -14.41334 -14.24200 -13.78855 -13.68932 -13.40355 -13.24285 -13.02580 -12.48923 -12.16785 -11.96922 -11.72991 -11.64246 -11.60320 -11.27199 -11.21911 -11.03933 -10.91731 -10.82822 -10.61572 -10.56207 -10.11992 -10.06532 -10.00359 -9.60053 -8.75424 -8.56409 -8.16057 -7.97003 -6.40736 -4.08154 3.46245 3.50971 3.58396 3.67612 4.00366 4.48933 4.51976 4.55467 4.68068 4.76354 4.87266 4.96163 4.98982 5.13869 5.19423 5.37214 5.37248 5.39430 5.46460 5.50496 5.51160 5.63479 5.69408 5.70149 5.75187 5.77964 5.83521 5.88366 5.97684 5.99371 6.00909 6.03234 6.09251 6.16422 6.26188 6.32233 6.35704 6.83139 7.20149 7.28874 7.30739 7.99256 8.26812 8.73094 8.89526 9.62421 10.99668 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.003811 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.107139 B = 7345.924328 C = 8118.950294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.521 5.521 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.371 6.371 6 C 0.185 3.815 7 C -0.591 4.591 8 H 0.061 0.939 9 C 0.015 3.985 10 N -0.914 5.914 11 Si 1.081 2.919 12 H -0.286 1.286 13 H -0.286 1.286 14 H -0.283 1.283 15 C 0.090 3.910 16 H 0.082 0.918 17 C -0.153 4.153 18 C -0.111 4.111 19 C -0.080 4.080 20 C -0.120 4.120 21 C -0.174 4.174 22 C -0.176 4.176 23 C -0.073 4.073 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.037 0.963 31 H -0.007 1.007 32 H -0.009 1.009 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -8.859 -21.655 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.243 5.243 3 C -0.066 4.066 4 C -0.015 4.015 5 O -0.289 6.289 6 C 0.110 3.890 7 C -0.629 4.629 8 H 0.079 0.921 9 C -0.187 4.187 10 N -0.551 5.551 11 Si 0.909 3.091 12 H -0.213 1.213 13 H -0.212 1.212 14 H -0.209 1.209 15 C -0.018 4.018 16 H 0.100 0.900 17 C -0.193 4.193 18 C -0.149 4.149 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.211 4.211 22 C -0.213 4.213 23 C -0.111 4.111 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.010 0.990 32 H 0.009 0.991 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.249 -9.323 -19.586 21.728 hybrid contribution -0.823 0.852 -2.421 2.696 sum -2.072 -8.470 -22.007 23.672 Atomic orbital electron populations 1.22499 0.88177 1.01948 1.00405 1.62077 1.07415 1.13634 1.41193 1.22129 1.00774 0.88300 0.95397 1.22322 0.96144 0.94574 0.88429 1.87984 1.69428 1.56547 1.14989 1.20259 0.94959 0.93325 0.80431 1.21936 1.31072 1.17604 0.92325 0.92086 1.25929 0.97182 0.97178 0.98456 1.70773 1.28088 1.18847 1.37384 0.83376 0.75616 0.75143 0.75000 1.21308 1.21213 1.20910 1.21705 0.99821 0.93008 0.87300 0.90014 1.22223 1.01076 0.99778 0.96185 1.21426 1.00801 0.94980 0.97670 1.21131 1.00764 0.95512 0.94331 1.21472 1.00864 0.93232 0.96514 1.23033 0.90590 1.04316 1.03160 1.22975 1.02098 0.93300 1.02968 1.21199 1.00721 0.93722 0.95418 0.95957 0.91316 0.91136 0.94208 0.90270 0.94561 0.94489 0.98984 0.99111 0.92361 0.91795 0.92040 0.92261 0.91848 0.91751 0.92059 0.89145 0.88587 0.88780 0.89126 0.90762 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.53 60.07 0.51 0.76 16 2 N -0.52 -8.00 4.70 -234.80 -1.10 -9.11 16 3 C 0.06 0.96 4.78 -3.82 -0.02 0.94 16 4 C 0.06 1.22 5.99 37.16 0.22 1.44 16 5 O -0.37 -9.38 10.27 -35.23 -0.36 -9.74 16 6 C 0.19 5.23 5.00 36.00 0.18 5.41 16 7 C -0.59 -18.17 9.43 -34.44 -0.32 -18.49 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 10 N -0.91 -28.67 13.65 55.43 0.76 -27.91 16 11 Si 1.08 26.16 29.90 -169.99 -5.08 21.08 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.09 1.13 2.23 -67.65 -0.15 0.98 16 16 H 0.08 1.10 8.03 -51.93 -0.42 0.68 16 17 C -0.15 -1.60 4.40 -26.79 -0.12 -1.71 16 18 C -0.11 -0.98 5.93 -26.67 -0.16 -1.14 16 19 C -0.08 -0.69 5.67 -26.56 -0.15 -0.84 16 20 C -0.12 -1.17 1.97 -154.53 -0.31 -1.48 16 21 C -0.17 -1.64 9.93 -26.79 -0.27 -1.91 16 22 C -0.18 -1.59 9.99 -26.81 -0.27 -1.86 16 23 C -0.07 -0.85 4.84 -26.56 -0.13 -0.98 16 24 H 0.02 0.27 6.57 -51.93 -0.34 -0.08 16 25 H 0.07 0.87 6.06 -51.93 -0.31 0.56 16 26 H 0.07 1.08 6.37 -51.93 -0.33 0.75 16 27 H 0.04 0.52 6.87 -51.92 -0.36 0.17 16 28 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 29 H 0.04 0.68 6.34 -51.93 -0.33 0.35 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H -0.01 -0.22 8.01 -51.93 -0.42 -0.63 16 32 H -0.01 -0.25 8.01 -51.93 -0.42 -0.67 16 33 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 34 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 35 H 0.06 0.65 6.60 -51.93 -0.34 0.31 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.07 0.78 6.19 -51.93 -0.32 0.46 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -32.64 344.05 -9.75 -42.38 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -8.07 Total: -3.37 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.07 Total: -18.51 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.35 Total: -37.02 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.36 Total: -9.74 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.64 -9.75 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723424216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.057 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds