Wall clock time and date at job start Mon Mar 30 2020 07:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99926 * 2 1 4 4 C 1.53002 * 109.47445 * 66.04323 * 3 2 1 5 5 O 1.42900 * 109.46612 * 64.99870 * 4 3 2 6 6 C 1.42905 * 113.99854 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47015 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99661 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00186 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00030 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 C 1.46898 * 110.99918 * 236.04504 * 2 1 3 16 16 H 1.09000 * 109.47364 * 178.95103 * 15 2 1 17 17 C 1.52948 * 109.47595 * 58.94626 * 15 2 1 18 18 C 1.52933 * 109.82260 * 177.02346 * 17 15 2 19 19 C 1.53178 * 109.45513 * 62.98076 * 18 17 15 20 20 C 1.53148 * 108.88207 * 303.43440 * 19 18 17 21 21 C 1.52852 * 117.67931 * 268.50933 * 20 19 18 22 22 C 1.52815 * 117.75217 * 199.62675 * 20 19 18 23 23 C 1.53144 * 115.01077 * 53.93542 * 20 19 18 24 24 H 1.09002 * 109.47065 * 60.00038 * 1 2 3 25 25 H 1.08996 * 109.46650 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47048 * 300.00439 * 1 2 3 27 27 H 1.09007 * 109.47284 * 306.04459 * 3 2 1 28 28 H 1.09003 * 109.47221 * 186.04762 * 3 2 1 29 29 H 1.08999 * 109.46924 * 305.00379 * 4 3 2 30 30 H 1.09000 * 109.47252 * 185.00051 * 4 3 2 31 31 H 1.09002 * 109.46943 * 59.99854 * 6 5 4 32 32 H 1.09000 * 109.46722 * 300.00253 * 6 5 4 33 33 H 0.97001 * 119.99697 * 359.97438 * 10 9 7 34 34 H 1.08996 * 109.40889 * 297.12829 * 17 15 2 35 35 H 1.08999 * 109.41265 * 56.91760 * 17 15 2 36 36 H 1.08999 * 109.47760 * 182.97701 * 18 17 15 37 37 H 1.09009 * 109.47766 * 302.97781 * 18 17 15 38 38 H 1.08990 * 109.57030 * 63.25479 * 19 18 17 39 39 H 1.09001 * 109.56651 * 183.49791 * 19 18 17 40 40 H 1.08999 * 117.50701 * 359.72009 * 21 20 19 41 41 H 1.08996 * 117.50416 * 144.78353 * 21 20 19 42 42 H 1.08995 * 117.50142 * 215.11415 * 22 20 19 43 43 H 1.09001 * 117.49483 * 0.12239 * 22 20 19 44 44 H 1.09002 * 109.57724 * 186.24638 * 23 20 19 45 45 H 1.08998 * 109.56610 * 65.88370 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 8 2.2956 1.3976 2.3978 6 6 2.0213 1.9629 3.6813 7 6 2.7696 1.1936 4.7392 8 1 3.3920 0.3564 4.4596 9 6 2.6596 1.5585 6.0643 10 7 1.9021 2.5782 6.4049 11 14 3.5865 0.6045 7.3758 12 1 4.9261 1.2131 7.5769 13 1 3.7443 -0.8072 6.9426 14 1 2.8262 0.6489 8.6507 15 6 1.9955 -0.7660 -1.1376 16 1 3.0849 -0.7342 -1.1241 17 6 1.4838 -0.1561 -2.4435 18 6 2.0862 -0.9018 -3.6351 19 6 1.6192 -2.3605 -3.6131 20 6 2.0093 -2.9856 -2.2705 21 6 3.3612 -3.6933 -2.1828 22 6 2.0671 -4.5102 -2.1854 23 6 1.5256 -2.2204 -1.0352 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.5611 1.9274 -0.8310 28 1 3.0798 1.3444 -0.1083 29 1 0.5532 2.0058 1.4690 30 1 1.9438 3.1012 1.2830 31 1 0.9511 1.9089 3.8809 32 1 2.3415 3.0047 3.6954 33 1 1.4211 3.0738 5.7238 34 1 0.3972 -0.2347 -2.4787 35 1 1.7718 0.8941 -2.4902 36 1 1.7599 -0.4298 -4.5619 37 1 3.1739 -0.8674 -3.5733 38 1 0.5366 -2.3992 -3.7330 39 1 2.0963 -2.9089 -4.4254 40 1 3.9750 -3.7197 -3.0832 41 1 3.9079 -3.6195 -1.2428 42 1 1.7627 -4.9739 -1.2471 43 1 1.8292 -5.0740 -3.0874 44 1 1.9422 -2.6761 -0.1370 45 1 0.4370 -2.2500 -0.9905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723424216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:13 Heat of formation + Delta-G solvation = -56.399598 kcal Electronic energy + Delta-G solvation = -21011.292310 eV Core-core repulsion = 18027.976055 eV Total energy + Delta-G solvation = -2983.316255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93131 -39.06803 -37.83123 -35.29987 -34.60221 -31.84862 -29.79307 -28.70559 -28.26035 -26.79805 -24.73345 -23.44435 -23.17290 -22.79528 -20.85540 -19.48767 -19.18789 -17.54460 -17.46027 -16.57021 -16.28436 -15.77703 -15.76636 -15.61575 -15.35064 -14.89646 -14.76614 -14.32513 -14.16609 -13.94717 -13.52667 -13.39981 -13.16712 -12.77962 -12.69452 -12.62562 -12.39455 -12.36322 -12.03611 -11.93718 -11.87651 -11.83842 -11.67809 -11.35414 -10.85706 -10.83087 -10.81438 -10.40681 -10.31514 -9.08338 -8.84052 -6.54283 1.51657 1.61751 1.82109 2.49312 2.76951 2.97273 3.03029 3.09571 3.73322 3.78890 3.85008 3.98758 4.09185 4.13332 4.17979 4.20025 4.29042 4.36699 4.39271 4.48316 4.51491 4.52446 4.57069 4.58990 4.74058 4.80366 4.83178 4.92390 4.93049 4.98120 5.04368 5.05379 5.06689 5.16912 5.22291 5.27361 5.29450 5.44417 5.49949 5.69049 5.92123 6.14076 6.22443 6.33770 6.71808 7.26681 8.57089 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.003811 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.107139 B = 7345.924328 C = 8118.950294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.552 5.552 3 C 0.072 3.928 4 C 0.054 3.946 5 O -0.389 6.389 6 C 0.197 3.803 7 C -0.621 4.621 8 H 0.050 0.950 9 C -0.029 4.029 10 N -0.929 5.929 11 Si 1.131 2.869 12 H -0.266 1.266 13 H -0.272 1.272 14 H -0.274 1.274 15 C 0.094 3.906 16 H 0.067 0.933 17 C -0.146 4.146 18 C -0.108 4.108 19 C -0.076 4.076 20 C -0.125 4.125 21 C -0.178 4.178 22 C -0.171 4.171 23 C -0.069 4.069 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.047 0.953 31 H -0.022 1.022 32 H -0.020 1.020 33 H 0.255 0.745 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.049 0.951 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -9.714 -23.229 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.275 5.275 3 C -0.056 4.056 4 C -0.023 4.023 5 O -0.309 6.309 6 C 0.121 3.879 7 C -0.659 4.659 8 H 0.069 0.931 9 C -0.226 4.226 10 N -0.565 5.565 11 Si 0.949 3.051 12 H -0.191 1.191 13 H -0.197 1.197 14 H -0.199 1.199 15 C -0.014 4.014 16 H 0.085 0.915 17 C -0.185 4.185 18 C -0.146 4.146 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.215 4.215 22 C -0.207 4.207 23 C -0.107 4.107 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.065 0.935 31 H -0.004 1.004 32 H -0.002 1.002 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.068 0.932 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.100 -10.166 -21.204 23.541 hybrid contribution -0.910 1.134 -1.994 2.468 sum -2.010 -9.032 -23.199 24.976 Atomic orbital electron populations 1.22444 0.87366 1.02444 1.00310 1.62009 1.08429 1.13647 1.43423 1.22021 1.00682 0.88941 0.93962 1.22692 0.96088 0.95356 0.88193 1.87935 1.70445 1.57452 1.15031 1.19926 0.93611 0.92465 0.81883 1.22277 1.31817 1.17962 0.93808 0.93123 1.27624 0.96928 0.97072 1.00979 1.70900 1.28903 1.19686 1.37050 0.82791 0.75251 0.74564 0.72456 1.19128 1.19673 1.19872 1.21673 0.98912 0.93200 0.87650 0.91460 1.22139 1.01240 0.99735 0.95398 1.21416 1.00530 0.95098 0.97516 1.21133 1.01208 0.95279 0.93703 1.21462 1.01098 0.93636 0.96337 1.23055 0.90759 1.04620 1.03091 1.23033 1.01365 0.92862 1.03484 1.21121 1.00621 0.93404 0.95555 0.93729 0.90599 0.93358 0.90943 0.90842 0.94162 0.93520 1.00437 1.00247 0.93569 0.91401 0.92044 0.90596 0.92165 0.91238 0.90612 0.87782 0.90058 0.89405 0.87402 0.93249 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.53 127.69 1.09 1.68 16 2 N -0.55 -16.82 4.70 -896.78 -4.21 -21.03 16 3 C 0.07 2.19 4.78 86.30 0.41 2.60 16 4 C 0.05 2.09 5.99 71.98 0.43 2.52 16 5 O -0.39 -20.22 10.27 -148.98 -1.53 -21.75 16 6 C 0.20 11.48 5.00 71.23 0.36 11.84 16 7 C -0.62 -38.95 9.43 25.60 0.24 -38.70 16 8 H 0.05 3.21 7.81 -2.91 -0.02 3.18 16 9 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 10 N -0.93 -58.78 13.65 21.45 0.29 -58.48 16 11 Si 1.13 51.94 29.90 68.60 2.05 54.00 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 C 0.09 2.28 2.23 44.96 0.10 2.38 16 16 H 0.07 1.82 8.03 -2.39 -0.02 1.80 16 17 C -0.15 -2.72 4.40 30.55 0.13 -2.59 16 18 C -0.11 -1.62 5.93 30.63 0.18 -1.43 16 19 C -0.08 -1.10 5.67 30.70 0.17 -0.92 16 20 C -0.12 -2.26 1.97 -52.19 -0.10 -2.36 16 21 C -0.18 -3.18 9.93 30.56 0.30 -2.88 16 22 C -0.17 -2.81 9.99 30.55 0.31 -2.51 16 23 C -0.07 -1.59 4.84 30.70 0.15 -1.44 16 24 H 0.04 0.98 6.57 -2.39 -0.02 0.96 16 25 H 0.08 1.88 6.06 -2.39 -0.01 1.87 16 26 H 0.05 1.49 6.37 -2.39 -0.02 1.47 16 27 H 0.07 1.75 6.87 -2.38 -0.02 1.74 16 28 H 0.07 2.32 8.00 -2.39 -0.02 2.30 16 29 H 0.04 1.53 6.34 -2.39 -0.02 1.51 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 31 H -0.02 -1.32 8.01 -2.39 -0.02 -1.34 16 32 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 33 H 0.26 16.31 7.22 -92.71 -0.67 15.64 16 34 H 0.07 1.23 6.63 -2.39 -0.02 1.21 16 35 H 0.06 1.15 6.60 -2.39 -0.02 1.13 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.35 8.09 -2.39 -0.02 1.33 16 45 H 0.07 1.55 6.19 -2.39 -0.01 1.54 16 Total: -1.00 -70.68 344.05 1.87 -68.81 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.03 Total: 11.55 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 4.24 Total: -33.09 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -3.92 Total: -79.51 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.53 Total: -21.75 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.05 Total: 54.00 kcal Total: -70.68 1.87 -68.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723424216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.410 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds