Wall clock time and date at job start Mon Mar 30 2020 07:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00134 * 2 1 4 4 C 1.53000 * 109.47337 * 66.04476 * 3 2 1 5 5 O 1.42903 * 109.46896 * 64.99681 * 4 3 2 6 6 C 1.42894 * 113.99954 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47347 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00570 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00413 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99592 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47077 * 90.00578 * 11 9 7 13 13 H 1.48500 * 109.47058 * 210.00068 * 11 9 7 14 14 H 1.48500 * 109.47218 * 330.00192 * 11 9 7 15 15 C 1.46899 * 110.99777 * 236.04741 * 2 1 3 16 16 H 1.09003 * 109.48339 * 63.94171 * 15 2 1 17 17 C 1.52945 * 109.47394 * 183.95520 * 15 2 1 18 18 C 1.52936 * 109.76694 * 182.93665 * 17 15 2 19 19 C 1.53182 * 109.45558 * 297.05267 * 18 17 15 20 20 C 1.53153 * 108.87929 * 56.56696 * 19 18 17 21 21 C 1.52809 * 117.75016 * 160.38137 * 20 19 18 22 22 C 1.52842 * 117.68035 * 91.49489 * 20 19 18 23 23 C 1.53038 * 109.37566 * 303.96477 * 15 2 1 24 24 H 1.09002 * 109.47110 * 183.95335 * 1 2 3 25 25 H 1.08994 * 109.46781 * 303.95181 * 1 2 3 26 26 H 1.08996 * 109.46763 * 63.95318 * 1 2 3 27 27 H 1.08997 * 109.47139 * 186.04845 * 3 2 1 28 28 H 1.09004 * 109.46913 * 306.04494 * 3 2 1 29 29 H 1.08995 * 109.47470 * 185.00101 * 4 3 2 30 30 H 1.09005 * 109.47129 * 305.00200 * 4 3 2 31 31 H 1.09001 * 109.47658 * 300.00657 * 6 5 4 32 32 H 1.09003 * 109.47315 * 60.00861 * 6 5 4 33 33 H 0.96995 * 120.00242 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.41363 * 62.86210 * 17 15 2 35 35 H 1.09001 * 109.40875 * 303.01100 * 17 15 2 36 36 H 1.08999 * 109.47558 * 57.04713 * 18 17 15 37 37 H 1.08999 * 109.47540 * 177.05851 * 18 17 15 38 38 H 1.08999 * 109.57267 * 176.38620 * 19 18 17 39 39 H 1.08996 * 109.56899 * 296.62760 * 19 18 17 40 40 H 1.09006 * 117.49746 * 359.84489 * 21 20 19 41 41 H 1.08999 * 117.50087 * 144.88045 * 21 20 19 42 42 H 1.09005 * 117.50259 * 215.21554 * 22 20 19 43 43 H 1.08999 * 117.50899 * 0.27399 * 22 20 19 44 44 H 1.08998 * 109.58739 * 63.59861 * 23 15 2 45 45 H 1.09007 * 109.69357 * 303.27317 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 8 2.2956 1.3975 2.3979 6 6 2.0223 1.9634 3.6812 7 6 2.7704 1.1940 4.7392 8 1 3.3928 0.3568 4.4594 9 6 2.6605 1.5588 6.0642 10 7 3.3138 0.8877 6.9875 11 14 1.5847 3.0073 6.5480 12 1 0.2057 2.5297 6.8227 13 1 2.1381 3.6495 7.7672 14 1 1.5551 3.9942 5.4387 15 6 1.9954 -0.7660 -1.1376 16 1 1.7043 -0.2801 -2.0689 17 6 3.5211 -0.8264 -1.0493 18 6 4.0811 -1.5597 -2.2690 19 6 3.5771 -3.0062 -2.2706 20 6 2.0459 -2.9975 -2.2418 21 6 1.3186 -4.2638 -2.6919 22 6 1.3105 -3.0186 -3.5815 23 6 1.4244 -2.1853 -1.1018 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5739 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3443 -0.1083 28 1 1.5612 1.9273 -0.8310 29 1 1.9439 3.1011 1.2831 30 1 0.5532 2.0058 1.4691 31 1 2.3431 3.0051 3.6948 32 1 0.9521 1.9102 3.8814 33 1 3.2367 1.1445 7.9196 34 1 3.8108 -1.3577 -0.1427 35 1 3.9227 0.1865 -1.0196 36 1 3.7495 -1.0584 -3.1783 37 1 5.1703 -1.5545 -2.2278 38 1 3.9225 -3.5123 -3.1721 39 1 3.9576 -3.5263 -1.3915 40 1 1.9293 -5.1078 -3.0130 41 1 0.3924 -4.5218 -2.1784 42 1 0.3788 -2.4573 -3.6532 43 1 1.9157 -3.0433 -4.4877 44 1 0.3424 -2.1472 -1.2284 45 1 1.6639 -2.6537 -0.1471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723424217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:17 Heat of formation + Delta-G solvation = -26.851762 kcal Electronic energy + Delta-G solvation = -21050.523098 eV Core-core repulsion = 18068.488133 eV Total energy + Delta-G solvation = -2982.034965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86292 -37.67696 -36.22090 -33.99163 -32.57875 -30.73685 -28.83203 -28.01423 -27.04417 -25.33075 -22.67719 -22.04476 -21.78042 -21.53769 -19.97446 -18.74044 -16.80127 -16.32381 -15.66882 -15.56647 -15.07517 -14.67762 -14.51270 -14.18342 -14.02797 -13.70665 -13.29753 -13.07131 -12.77171 -12.64160 -12.38455 -12.08388 -11.84131 -11.65103 -11.56340 -11.35904 -11.22820 -10.94637 -10.84941 -10.77467 -10.66953 -10.43467 -10.17323 -9.96292 -9.80139 -9.57493 -9.09734 -8.75578 -8.37408 -8.02370 -6.05730 -4.03712 3.27997 3.34689 3.36456 3.59664 3.97692 4.40287 4.49932 4.57845 4.70683 4.75324 4.91807 5.07572 5.10500 5.17159 5.25616 5.34697 5.37285 5.40758 5.46820 5.48510 5.57065 5.66407 5.70202 5.71813 5.77563 5.85901 5.88243 5.95456 5.95945 6.02086 6.06376 6.12408 6.17920 6.22862 6.27217 6.34934 6.50616 6.67523 7.07073 7.29369 7.33417 7.67131 8.13123 8.76070 9.07914 9.54336 11.07530 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.003757 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.078186 B = 7450.497413 C = 7652.295638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.524 5.524 3 C 0.056 3.944 4 C 0.062 3.938 5 O -0.363 6.363 6 C 0.168 3.832 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.094 3.906 16 H 0.033 0.967 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.082 4.082 20 C -0.116 4.116 21 C -0.176 4.176 22 C -0.178 4.178 23 C -0.075 4.075 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.017 0.983 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.037 0.963 31 H -0.001 1.001 32 H -0.005 1.005 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 -4.791 -22.044 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.248 5.248 3 C -0.071 4.071 4 C -0.016 4.016 5 O -0.282 6.282 6 C 0.092 3.908 7 C -0.551 4.551 8 H 0.101 0.899 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.192 1.192 15 C -0.015 4.015 16 H 0.051 0.949 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.213 4.213 22 C -0.215 4.215 23 C -0.113 4.113 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.922 -5.177 -21.421 22.384 hybrid contribution -1.151 1.420 -0.304 1.853 sum -5.073 -3.757 -21.725 22.624 Atomic orbital electron populations 1.22461 0.87985 1.02218 1.00006 1.61884 1.07164 1.13448 1.42272 1.22208 1.01462 0.88136 0.95308 1.22353 0.96148 0.94642 0.88459 1.88012 1.69311 1.56258 1.14605 1.20572 0.94941 0.93712 0.81554 1.20905 1.28528 1.16257 0.89441 0.89906 1.24764 0.95628 0.96569 0.96057 1.69876 1.42376 1.40368 1.00979 0.86865 0.81142 0.83349 0.78456 1.20009 1.20863 1.19182 1.21517 0.95217 0.93612 0.91109 0.94872 1.21619 0.94013 1.00950 0.98748 1.21493 0.99998 0.95313 0.98333 1.21161 0.91895 0.97090 1.01783 1.21485 0.94472 0.99905 0.95767 1.22972 1.02522 0.91824 1.03979 1.23007 1.02312 1.01812 0.94337 1.21213 0.98612 0.93867 0.97563 0.91286 0.90992 0.96496 0.89507 0.94544 0.94324 0.94476 0.98324 0.98695 0.92466 0.90434 0.91641 0.92369 0.91732 0.92191 0.91161 0.88966 0.88921 0.89200 0.89135 0.91984 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.91 60.07 0.54 0.82 16 2 N -0.52 -7.91 4.58 -234.90 -1.08 -8.98 16 3 C 0.06 0.85 5.16 -3.83 -0.02 0.83 16 4 C 0.06 1.12 6.00 37.16 0.22 1.35 16 5 O -0.36 -8.72 10.27 -35.23 -0.36 -9.08 16 6 C 0.17 4.38 4.76 36.00 0.17 4.55 16 7 C -0.51 -15.62 9.99 -34.44 -0.34 -15.96 16 8 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 11 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 15 C 0.09 1.18 1.94 -67.72 -0.13 1.05 16 16 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 17 C -0.12 -1.44 4.99 -26.79 -0.13 -1.58 16 18 C -0.11 -1.13 5.93 -26.67 -0.16 -1.29 16 19 C -0.08 -0.79 5.67 -26.56 -0.15 -0.94 16 20 C -0.12 -1.15 1.97 -154.53 -0.30 -1.46 16 21 C -0.18 -1.56 9.99 -26.81 -0.27 -1.82 16 22 C -0.18 -1.56 9.93 -26.79 -0.27 -1.83 16 23 C -0.07 -0.87 4.46 -26.63 -0.12 -0.99 16 24 H 0.07 0.86 6.31 -51.93 -0.33 0.53 16 25 H 0.07 1.04 6.21 -51.93 -0.32 0.71 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 1.32 5.77 -51.93 -0.30 1.02 16 28 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.64 6.26 -51.93 -0.33 0.32 16 31 H 0.00 -0.02 7.20 -51.93 -0.37 -0.40 16 32 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 33 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.83 6.04 -51.93 -0.31 0.52 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.69 6.51 -51.93 -0.34 0.35 16 45 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -32.03 344.36 -9.40 -41.43 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -8.20 Total: -3.08 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.06 Total: -15.24 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.30 Total: -36.34 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.36 Total: -9.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.03 -9.40 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723424217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.580 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds