Wall clock time and date at job start Mon Mar 30 2020 07:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00134 * 2 1 4 4 C 1.53000 * 109.47337 * 66.04476 * 3 2 1 5 5 O 1.42903 * 109.46896 * 64.99681 * 4 3 2 6 6 C 1.42894 * 113.99954 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47347 * 180.02562 * 6 5 4 8 8 H 1.08009 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00570 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00413 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99592 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47077 * 90.00578 * 11 9 7 13 13 H 1.48500 * 109.47058 * 210.00068 * 11 9 7 14 14 H 1.48500 * 109.47218 * 330.00192 * 11 9 7 15 15 C 1.46899 * 110.99777 * 236.04741 * 2 1 3 16 16 H 1.09003 * 109.48339 * 63.94171 * 15 2 1 17 17 C 1.52945 * 109.47394 * 183.95520 * 15 2 1 18 18 C 1.52936 * 109.76694 * 182.93665 * 17 15 2 19 19 C 1.53182 * 109.45558 * 297.05267 * 18 17 15 20 20 C 1.53153 * 108.87929 * 56.56696 * 19 18 17 21 21 C 1.52809 * 117.75016 * 160.38137 * 20 19 18 22 22 C 1.52842 * 117.68035 * 91.49489 * 20 19 18 23 23 C 1.53038 * 109.37566 * 303.96477 * 15 2 1 24 24 H 1.09002 * 109.47110 * 183.95335 * 1 2 3 25 25 H 1.08994 * 109.46781 * 303.95181 * 1 2 3 26 26 H 1.08996 * 109.46763 * 63.95318 * 1 2 3 27 27 H 1.08997 * 109.47139 * 186.04845 * 3 2 1 28 28 H 1.09004 * 109.46913 * 306.04494 * 3 2 1 29 29 H 1.08995 * 109.47470 * 185.00101 * 4 3 2 30 30 H 1.09005 * 109.47129 * 305.00200 * 4 3 2 31 31 H 1.09001 * 109.47658 * 300.00657 * 6 5 4 32 32 H 1.09003 * 109.47315 * 60.00861 * 6 5 4 33 33 H 0.96995 * 120.00242 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.41363 * 62.86210 * 17 15 2 35 35 H 1.09001 * 109.40875 * 303.01100 * 17 15 2 36 36 H 1.08999 * 109.47558 * 57.04713 * 18 17 15 37 37 H 1.08999 * 109.47540 * 177.05851 * 18 17 15 38 38 H 1.08999 * 109.57267 * 176.38620 * 19 18 17 39 39 H 1.08996 * 109.56899 * 296.62760 * 19 18 17 40 40 H 1.09006 * 117.49746 * 359.84489 * 21 20 19 41 41 H 1.08999 * 117.50087 * 144.88045 * 21 20 19 42 42 H 1.09005 * 117.50259 * 215.21554 * 22 20 19 43 43 H 1.08999 * 117.50899 * 0.27399 * 22 20 19 44 44 H 1.08998 * 109.58739 * 63.59861 * 23 15 2 45 45 H 1.09007 * 109.69357 * 303.27317 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 8 2.2956 1.3975 2.3979 6 6 2.0223 1.9634 3.6812 7 6 2.7704 1.1940 4.7392 8 1 3.3928 0.3568 4.4594 9 6 2.6605 1.5588 6.0642 10 7 3.3138 0.8877 6.9875 11 14 1.5847 3.0073 6.5480 12 1 0.2057 2.5297 6.8227 13 1 2.1381 3.6495 7.7672 14 1 1.5551 3.9942 5.4387 15 6 1.9954 -0.7660 -1.1376 16 1 1.7043 -0.2801 -2.0689 17 6 3.5211 -0.8264 -1.0493 18 6 4.0811 -1.5597 -2.2690 19 6 3.5771 -3.0062 -2.2706 20 6 2.0459 -2.9975 -2.2418 21 6 1.3186 -4.2638 -2.6919 22 6 1.3105 -3.0186 -3.5815 23 6 1.4244 -2.1853 -1.1018 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5739 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3443 -0.1083 28 1 1.5612 1.9273 -0.8310 29 1 1.9439 3.1011 1.2831 30 1 0.5532 2.0058 1.4691 31 1 2.3431 3.0051 3.6948 32 1 0.9521 1.9102 3.8814 33 1 3.2367 1.1445 7.9196 34 1 3.8108 -1.3577 -0.1427 35 1 3.9227 0.1865 -1.0196 36 1 3.7495 -1.0584 -3.1783 37 1 5.1703 -1.5545 -2.2278 38 1 3.9225 -3.5123 -3.1721 39 1 3.9576 -3.5263 -1.3915 40 1 1.9293 -5.1078 -3.0130 41 1 0.3924 -4.5218 -2.1784 42 1 0.3788 -2.4573 -3.6532 43 1 1.9157 -3.0433 -4.4877 44 1 0.3424 -2.1472 -1.2284 45 1 1.6639 -2.6537 -0.1471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723424217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:17 Heat of formation + Delta-G solvation = -47.185422 kcal Electronic energy + Delta-G solvation = -21051.404831 eV Core-core repulsion = 18068.488133 eV Total energy + Delta-G solvation = -2982.916699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77578 -38.98650 -37.65124 -35.03035 -34.71145 -31.96940 -30.26592 -29.39841 -28.35277 -26.42321 -23.95757 -23.38528 -23.10105 -22.54472 -21.04454 -19.59754 -19.02491 -17.51380 -17.36451 -16.56849 -16.32863 -16.23353 -15.65763 -15.52552 -15.15838 -14.86935 -14.69810 -14.23849 -14.08189 -13.90162 -13.64649 -13.55534 -13.10669 -12.78347 -12.69752 -12.59345 -12.44079 -12.31382 -12.12206 -11.93190 -11.83559 -11.70211 -11.64537 -11.28807 -11.15182 -10.91322 -10.76815 -10.39272 -10.25615 -9.10522 -8.36161 -6.43631 1.32523 1.36094 1.47009 2.29897 2.81042 2.96143 2.98315 3.15687 3.67398 3.79925 3.94269 4.07205 4.12068 4.19042 4.23666 4.28638 4.32284 4.46512 4.49637 4.51499 4.54513 4.58203 4.63007 4.68986 4.70454 4.81855 4.92312 4.93621 5.02459 5.04522 5.06661 5.11037 5.14736 5.17915 5.28397 5.30150 5.32163 5.42756 5.45959 5.53729 5.95826 6.21069 6.29022 6.60718 6.82908 7.21139 8.81333 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.003757 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.078186 B = 7450.497413 C = 7652.295638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.062 3.938 4 C 0.053 3.947 5 O -0.392 6.392 6 C 0.180 3.820 7 C -0.542 4.542 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.944 5.944 11 Si 0.957 3.043 12 H -0.260 1.260 13 H -0.272 1.272 14 H -0.246 1.246 15 C 0.099 3.901 16 H 0.047 0.953 17 C -0.115 4.115 18 C -0.107 4.107 19 C -0.081 4.081 20 C -0.131 4.131 21 C -0.174 4.174 22 C -0.165 4.165 23 C -0.070 4.070 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.010 0.990 32 H 0.006 0.994 33 H 0.273 0.727 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 -3.299 -24.057 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.280 5.280 3 C -0.066 4.066 4 C -0.024 4.024 5 O -0.311 6.311 6 C 0.104 3.896 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.186 4.186 10 N -0.583 5.583 11 Si 0.778 3.222 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.169 1.169 15 C -0.009 4.009 16 H 0.064 0.936 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.211 4.211 22 C -0.202 4.202 23 C -0.107 4.107 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.603 -3.696 -23.465 24.406 hybrid contribution -0.568 0.852 0.298 1.067 sum -6.171 -2.844 -23.166 24.142 Atomic orbital electron populations 1.22429 0.87063 1.02454 1.00438 1.61845 1.08322 1.13769 1.44094 1.22147 1.01329 0.88564 0.94527 1.22718 0.96418 0.95543 0.87739 1.87971 1.70571 1.57529 1.15071 1.20270 0.94509 0.93183 0.81652 1.21163 1.29193 1.15861 0.91806 0.95466 1.25854 0.97050 1.00177 0.95485 1.70037 1.43963 1.42548 1.01764 0.85591 0.78931 0.78849 0.78837 1.18459 1.19720 1.16912 1.21515 0.94902 0.93789 0.90694 0.93563 1.21599 0.94466 1.00559 0.98648 1.21450 1.00276 0.95348 0.97382 1.21151 0.91840 0.96793 1.02022 1.21424 0.94598 1.00944 0.96167 1.23043 1.02385 0.91950 1.03751 1.23062 1.02148 1.01112 0.93835 1.21120 0.99066 0.93480 0.97079 0.90982 0.92357 0.94312 0.90251 0.91360 0.92675 0.93435 0.97262 0.97642 0.91829 0.93661 0.92123 0.91032 0.91150 0.90352 0.92556 0.88010 0.88971 0.88855 0.87851 0.91362 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 8.91 127.69 1.14 1.75 16 2 N -0.56 -16.56 4.58 -897.09 -4.11 -20.67 16 3 C 0.06 1.79 5.16 86.30 0.45 2.24 16 4 C 0.05 1.85 6.00 71.98 0.43 2.28 16 5 O -0.39 -19.09 10.27 -148.98 -1.53 -20.62 16 6 C 0.18 9.37 4.76 71.24 0.34 9.71 16 7 C -0.54 -34.23 9.99 25.60 0.26 -33.97 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C 0.01 0.73 5.47 84.65 0.46 1.19 16 10 N -0.94 -60.75 13.96 21.45 0.30 -60.45 16 11 Si 0.96 44.36 27.47 68.60 1.88 46.25 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 14 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 15 C 0.10 2.43 1.94 44.91 0.09 2.51 16 16 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 17 C -0.11 -2.91 4.99 30.55 0.15 -2.76 16 18 C -0.11 -2.03 5.93 30.63 0.18 -1.85 16 19 C -0.08 -1.48 5.67 30.71 0.17 -1.30 16 20 C -0.13 -2.44 1.97 -52.19 -0.10 -2.54 16 21 C -0.17 -2.78 9.99 30.54 0.31 -2.47 16 22 C -0.16 -2.45 9.93 30.55 0.30 -2.15 16 23 C -0.07 -1.61 4.46 30.66 0.14 -1.48 16 24 H 0.07 1.75 6.31 -2.39 -0.02 1.74 16 25 H 0.06 1.63 6.21 -2.39 -0.01 1.61 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 2.40 5.77 -2.39 -0.01 2.39 16 28 H 0.07 1.55 8.12 -2.38 -0.02 1.53 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.57 6.26 -2.38 -0.01 1.55 16 31 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 32 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 33 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.56 6.04 -2.39 -0.01 1.55 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.45 6.51 -2.39 -0.02 1.44 16 45 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -71.73 344.36 1.73 -70.00 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.88 Total: 14.33 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.31 Total: -28.84 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.81 Total: -81.12 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.53 Total: -20.62 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -71.73 1.73 -70.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723424217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.813 kcal (2) G-P(sol) polarization free energy of solvation -71.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds