Wall clock time and date at job start Mon Mar 30 2020 08:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 C 1.50698 * 109.47285 * 240.00039 * 2 1 3 5 5 H 1.07999 * 119.99814 * 240.00524 * 4 2 1 6 6 C 1.37875 * 119.99725 * 59.99669 * 4 2 1 7 7 N 1.31510 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86811 * 119.99624 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47024 * 90.00216 * 8 6 4 10 10 H 1.48498 * 109.46913 * 209.99955 * 8 6 4 11 11 H 1.48500 * 109.46880 * 330.00113 * 8 6 4 12 12 C 1.52996 * 109.47108 * 119.99665 * 2 1 3 13 13 N 1.46500 * 109.47338 * 300.00062 * 12 2 1 14 14 C 1.37485 * 120.00183 * 179.97438 * 13 12 2 15 15 N 1.30340 * 119.99700 * 0.02562 * 14 13 12 16 16 N 1.37482 * 119.99971 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99881 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47289 * 275.00472 * 17 16 14 19 19 C 1.52996 * 109.47131 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47518 * 59.99828 * 19 18 17 21 21 C 1.53005 * 109.46632 * 300.00318 * 20 19 18 22 22 C 1.52996 * 109.47571 * 60.00168 * 21 20 19 23 23 H 1.08999 * 109.47143 * 300.00314 * 1 2 3 24 24 H 1.09006 * 109.47050 * 60.00093 * 1 2 3 25 25 H 1.08994 * 109.46989 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46971 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47198 * 299.99816 * 3 2 1 28 28 H 1.08999 * 109.47484 * 59.99894 * 3 2 1 29 29 H 0.97000 * 120.00304 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47323 * 180.02562 * 12 2 1 31 31 H 1.09004 * 109.46622 * 59.99842 * 12 2 1 32 32 H 0.97000 * 120.00095 * 0.02562 * 13 12 2 33 33 H 0.96995 * 120.00511 * 359.97438 * 15 14 13 34 34 H 0.97000 * 120.00307 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.47060 * 35.00741 * 17 16 14 36 36 H 1.09001 * 109.46832 * 299.99854 * 18 17 16 37 37 H 1.08996 * 109.46952 * 59.99873 * 18 17 16 38 38 H 1.09001 * 109.46997 * 299.99574 * 19 18 17 39 39 H 1.09004 * 109.47552 * 179.97438 * 19 18 17 40 40 H 1.08992 * 109.47399 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47194 * 59.99866 * 20 19 18 42 42 H 1.09001 * 109.47420 * 299.99415 * 21 20 19 43 43 H 1.09004 * 109.46832 * 179.97438 * 21 20 19 44 44 H 1.08992 * 109.47346 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47364 * 59.99212 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8834 -0.5005 3.6941 15 7 2.6328 -1.5602 3.8137 16 7 1.4256 0.1480 4.8166 17 6 1.7795 -0.3525 6.1473 18 6 0.7951 -1.4492 6.5582 19 6 1.1643 -1.9714 7.9481 20 6 1.0999 -0.8238 8.9579 21 6 2.0844 0.2729 8.5468 22 6 1.7150 0.7952 7.1570 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.7089 1.1613 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -1.7488 1.2492 32 1 0.9937 0.7579 2.3564 33 1 2.9561 -2.0175 3.0218 34 1 0.8682 0.9368 4.7276 35 1 2.7899 -0.7609 6.1250 36 1 -0.2153 -1.0408 6.5805 37 1 0.8407 -2.2666 5.8386 38 1 2.1747 -2.3798 7.9261 39 1 0.4627 -2.7525 8.2411 40 1 1.3634 -1.1957 9.9479 41 1 0.0895 -0.4154 8.9798 42 1 3.0948 -0.1353 8.5249 43 1 2.0381 1.0908 9.2660 44 1 2.4166 1.5762 6.8641 45 1 0.7046 1.2035 7.1789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849040233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:31 Heat of formation + Delta-G solvation = -0.672997 kcal Electronic energy + Delta-G solvation = -20944.311352 eV Core-core repulsion = 17995.704334 eV Total energy + Delta-G solvation = -2948.607017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.15390 -37.74733 -35.73895 -33.30350 -31.46892 -30.80626 -29.74293 -28.81961 -25.72072 -25.56597 -24.68946 -22.67665 -22.16912 -20.05648 -19.79848 -18.54793 -17.56499 -16.16325 -15.78375 -15.11273 -14.73099 -14.43275 -14.39622 -14.02252 -13.82342 -13.58468 -12.96953 -12.85405 -12.60667 -12.25933 -12.14675 -11.95452 -11.37099 -11.22736 -11.20004 -11.13768 -10.83246 -10.72882 -10.68118 -10.45041 -10.26110 -10.20573 -10.15107 -9.60157 -9.34510 -8.83293 -8.75605 -8.41572 -8.15758 -7.40263 -6.03641 -4.14212 3.25624 3.26837 3.33999 3.38109 3.67883 4.36147 4.60857 4.64299 4.71007 4.88051 5.11151 5.21909 5.23109 5.39153 5.45486 5.48447 5.56874 5.66347 5.92109 5.94438 6.03223 6.06522 6.09998 6.18331 6.26278 6.29503 6.40423 6.47649 6.54899 6.72403 6.84656 6.94991 7.00955 7.14638 7.35303 7.53858 7.55531 7.67732 7.84736 8.00145 8.11139 8.36672 8.64799 8.86412 9.38609 9.51897 10.97666 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.047442 B = 0.003383 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.053155 B = 8274.694141 C = 8466.373931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.061 3.939 3 C -0.128 4.128 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.145 3.855 13 N -0.765 5.765 14 C 0.631 3.369 15 N -0.845 5.845 16 N -0.732 5.732 17 C 0.179 3.821 18 C -0.128 4.128 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.129 4.129 23 H 0.006 0.994 24 H 0.084 0.916 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.386 0.614 33 H 0.337 0.663 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 0.806 18.425 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.060 3.940 3 C -0.186 4.186 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.021 3.979 13 N -0.409 5.409 14 C 0.264 3.736 15 N -0.495 5.495 16 N -0.374 5.374 17 C 0.073 3.927 18 C -0.167 4.167 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.167 4.167 23 H 0.025 0.975 24 H 0.103 0.897 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.103 0.897 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.221 0.779 33 H 0.153 0.847 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.714 0.211 19.073 19.088 hybrid contribution -0.323 0.339 -2.049 2.101 sum -1.036 0.549 17.025 17.065 Atomic orbital electron populations 1.21800 0.97772 0.99039 1.00004 1.18271 0.92753 0.92709 0.90252 1.21801 0.98431 0.98379 1.00009 1.20994 1.31572 1.12102 0.89991 0.92513 1.24880 0.94851 0.94889 0.98862 1.69806 1.36658 1.22701 1.23228 0.86577 0.79315 0.79399 0.82615 1.20703 1.21251 1.19891 1.21518 0.97196 0.95380 0.83799 1.45803 1.57777 1.33762 1.03550 1.18852 0.87470 0.87853 0.79407 1.69544 1.28479 1.14246 1.37273 1.43853 1.58306 1.32479 1.02723 1.20633 0.99625 0.92749 0.79710 1.21928 0.98815 0.99509 0.96470 1.21491 1.01854 0.97392 0.94690 1.21571 0.99499 0.96213 0.98540 1.21459 0.99643 0.98234 0.95857 1.21846 1.01886 0.98038 0.94976 0.97473 0.89741 0.95614 0.95600 0.89734 0.97468 0.92998 0.93683 0.93689 0.77943 0.84665 0.77102 0.89216 0.92730 0.90953 0.91753 0.92246 0.92230 0.92161 0.91687 0.91953 0.91575 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.41 0.50 -155.66 -0.08 1.33 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.25 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.68 9.35 55.43 0.52 -23.16 16 8 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 C 0.14 2.98 3.85 -4.04 -0.02 2.97 16 13 N -0.76 -13.56 5.07 -61.79 -0.31 -13.87 16 14 C 0.63 10.73 8.69 -320.09 -2.78 7.95 16 15 N -0.84 -15.61 12.84 30.15 0.39 -15.22 16 16 N -0.73 -9.82 5.19 -55.28 -0.29 -10.11 16 17 C 0.18 2.14 2.45 -67.93 -0.17 1.97 16 18 C -0.13 -1.49 5.50 -26.73 -0.15 -1.64 16 19 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.11 -0.93 5.92 -26.73 -0.16 -1.08 16 22 C -0.13 -1.20 5.39 -26.73 -0.14 -1.34 16 23 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 30 H 0.04 0.96 7.97 -51.93 -0.41 0.55 16 31 H 0.04 0.96 7.97 -51.93 -0.41 0.55 16 32 H 0.39 6.53 6.26 -40.82 -0.26 6.28 16 33 H 0.34 6.49 7.15 -40.82 -0.29 6.19 16 34 H 0.40 4.52 8.70 -40.82 -0.36 4.17 16 35 H 0.09 1.28 7.53 -51.93 -0.39 0.89 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -26.74 341.98 -11.22 -37.96 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -8.08 Total: 12.96 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.58 Total: -9.36 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.31 Total: -62.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.74 -11.22 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849040233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.284 kcal (2) G-P(sol) polarization free energy of solvation -26.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds