Wall clock time and date at job start Mon Mar 30 2020 08:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 C 1.50698 * 109.47285 * 240.00039 * 2 1 3 5 5 H 1.07999 * 119.99814 * 240.00524 * 4 2 1 6 6 C 1.37875 * 119.99725 * 59.99669 * 4 2 1 7 7 N 1.31510 * 120.00530 * 0.02562 * 6 4 2 8 8 Si 1.86811 * 119.99624 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47024 * 90.00216 * 8 6 4 10 10 H 1.48498 * 109.46913 * 209.99955 * 8 6 4 11 11 H 1.48500 * 109.46880 * 330.00113 * 8 6 4 12 12 C 1.52996 * 109.47108 * 119.99665 * 2 1 3 13 13 N 1.46500 * 109.47338 * 300.00062 * 12 2 1 14 14 C 1.37485 * 120.00183 * 179.97438 * 13 12 2 15 15 N 1.30340 * 119.99700 * 0.02562 * 14 13 12 16 16 N 1.37482 * 119.99971 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99881 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47289 * 275.00472 * 17 16 14 19 19 C 1.52996 * 109.47131 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47518 * 59.99828 * 19 18 17 21 21 C 1.53005 * 109.46632 * 300.00318 * 20 19 18 22 22 C 1.52996 * 109.47571 * 60.00168 * 21 20 19 23 23 H 1.08999 * 109.47143 * 300.00314 * 1 2 3 24 24 H 1.09006 * 109.47050 * 60.00093 * 1 2 3 25 25 H 1.08994 * 109.46989 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46971 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47198 * 299.99816 * 3 2 1 28 28 H 1.08999 * 109.47484 * 59.99894 * 3 2 1 29 29 H 0.97000 * 120.00304 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47323 * 180.02562 * 12 2 1 31 31 H 1.09004 * 109.46622 * 59.99842 * 12 2 1 32 32 H 0.97000 * 120.00095 * 0.02562 * 13 12 2 33 33 H 0.96995 * 120.00511 * 359.97438 * 15 14 13 34 34 H 0.97000 * 120.00307 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.47060 * 35.00741 * 17 16 14 36 36 H 1.09001 * 109.46832 * 299.99854 * 18 17 16 37 37 H 1.08996 * 109.46952 * 59.99873 * 18 17 16 38 38 H 1.09001 * 109.46997 * 299.99574 * 19 18 17 39 39 H 1.09004 * 109.47552 * 179.97438 * 19 18 17 40 40 H 1.08992 * 109.47399 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47194 * 59.99866 * 20 19 18 42 42 H 1.09001 * 109.47420 * 299.99415 * 21 20 19 43 43 H 1.09004 * 109.46832 * 179.97438 * 21 20 19 44 44 H 1.08992 * 109.47346 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47364 * 59.99212 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8834 -0.5005 3.6941 15 7 2.6328 -1.5602 3.8137 16 7 1.4256 0.1480 4.8166 17 6 1.7795 -0.3525 6.1473 18 6 0.7951 -1.4492 6.5582 19 6 1.1643 -1.9714 7.9481 20 6 1.0999 -0.8238 8.9579 21 6 2.0844 0.2729 8.5468 22 6 1.7150 0.7952 7.1570 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.7089 1.1613 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -1.7488 1.2492 32 1 0.9937 0.7579 2.3564 33 1 2.9561 -2.0175 3.0218 34 1 0.8682 0.9368 4.7276 35 1 2.7899 -0.7609 6.1250 36 1 -0.2153 -1.0408 6.5805 37 1 0.8407 -2.2666 5.8386 38 1 2.1747 -2.3798 7.9261 39 1 0.4627 -2.7525 8.2411 40 1 1.3634 -1.1957 9.9479 41 1 0.0895 -0.4154 8.9798 42 1 3.0948 -0.1353 8.5249 43 1 2.0381 1.0908 9.2660 44 1 2.4166 1.5762 6.8641 45 1 0.7046 1.2035 7.1789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849040233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:30 Heat of formation + Delta-G solvation = -12.968685 kcal Electronic energy + Delta-G solvation = -20944.844533 eV Core-core repulsion = 17995.704334 eV Total energy + Delta-G solvation = -2949.140198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25018 -39.09254 -37.25211 -34.69827 -33.13641 -31.63208 -31.26382 -29.83752 -27.58401 -27.43131 -26.41450 -23.47621 -23.11521 -21.33090 -20.76872 -20.26401 -18.99402 -17.68754 -17.32566 -16.54732 -16.20320 -15.66889 -15.35856 -15.21956 -15.05771 -14.76389 -14.70779 -14.02661 -14.00086 -13.52888 -13.30816 -13.10986 -13.03913 -12.93789 -12.59504 -12.56171 -12.24767 -12.14451 -12.00908 -11.95270 -11.47840 -11.42830 -11.23299 -11.13521 -10.98036 -10.72059 -10.40215 -10.21201 -9.44270 -8.83294 -8.03486 -6.19711 1.41806 1.44705 1.52674 2.00351 2.29631 2.45200 3.20350 3.28530 3.86693 3.94929 4.12370 4.32010 4.37674 4.42321 4.49943 4.56744 4.65610 4.68310 4.69371 4.79481 4.88644 4.92223 5.04311 5.04536 5.12217 5.17745 5.21364 5.27790 5.29803 5.35188 5.39908 5.42782 5.52675 5.61997 5.65007 5.65583 5.76871 6.12312 6.20172 6.28285 6.41642 6.57872 6.85713 7.27643 7.48463 7.98805 8.95486 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.047442 B = 0.003383 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.053155 B = 8274.694141 C = 8466.373931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.056 3.944 3 C -0.117 4.117 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.946 3.054 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.164 3.836 13 N -0.760 5.760 14 C 0.630 3.370 15 N -0.861 5.861 16 N -0.719 5.719 17 C 0.178 3.822 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.121 4.121 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.393 0.607 33 H 0.329 0.671 34 H 0.407 0.593 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 1.544 20.140 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.055 3.945 3 C -0.175 4.175 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.039 3.961 13 N -0.405 5.405 14 C 0.263 3.737 15 N -0.512 5.512 16 N -0.362 5.362 17 C 0.073 3.927 18 C -0.162 4.162 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.159 4.159 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.228 0.772 33 H 0.144 0.856 34 H 0.243 0.757 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.209 0.974 20.824 20.882 hybrid contribution -0.179 0.099 -2.547 2.555 sum -1.388 1.073 18.277 18.361 Atomic orbital electron populations 1.21637 0.97436 0.98407 1.00045 1.18266 0.92954 0.92873 0.90369 1.21637 0.97746 0.98096 1.00057 1.21311 1.31727 1.12213 0.91554 0.93421 1.25476 0.95146 0.95559 1.01086 1.69917 1.37104 1.23358 1.23579 0.85752 0.78732 0.78450 0.79838 1.20518 1.20960 1.19851 1.21075 0.96383 0.94709 0.83979 1.45562 1.57972 1.33822 1.03111 1.19055 0.87079 0.87631 0.79960 1.69593 1.29653 1.15181 1.36776 1.43944 1.57718 1.32367 1.02215 1.20723 0.98311 0.94109 0.79590 1.21849 0.99115 0.98295 0.96935 1.21477 1.01463 0.98338 0.93947 1.21552 0.99943 0.95394 0.98498 1.21477 0.99340 0.98843 0.95416 1.21799 1.02806 0.96730 0.94614 0.94873 0.92130 0.96501 0.96444 0.92129 0.94851 0.93080 0.94715 0.94752 0.77175 0.85588 0.75656 0.91727 0.91993 0.94186 0.92617 0.91609 0.90871 0.91394 0.92245 0.90083 0.91475 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 2 C 0.06 2.58 0.50 -52.93 -0.03 2.55 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -27.81 8.01 25.60 0.21 -27.61 16 5 H 0.05 2.53 7.74 -2.91 -0.02 2.50 16 6 C 0.03 1.42 5.15 84.65 0.44 1.86 16 7 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 C 0.16 6.71 3.85 86.38 0.33 7.05 16 13 N -0.76 -26.10 5.07 -349.42 -1.77 -27.87 16 14 C 0.63 20.93 8.69 260.54 2.26 23.19 16 15 N -0.86 -31.96 12.84 -58.53 -0.75 -32.71 16 16 N -0.72 -18.26 5.19 -328.81 -1.71 -19.97 16 17 C 0.18 4.05 2.45 44.99 0.11 4.16 16 18 C -0.12 -2.74 5.50 30.59 0.17 -2.57 16 19 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 20 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 21 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 22 C -0.12 -1.94 5.39 30.59 0.16 -1.78 16 23 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 24 H 0.06 3.04 6.07 -2.38 -0.01 3.03 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 28 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 29 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 30 H 0.03 1.49 7.97 -2.39 -0.02 1.47 16 31 H 0.03 1.48 7.97 -2.39 -0.02 1.46 16 32 H 0.39 12.47 6.26 -92.71 -0.58 11.89 16 33 H 0.33 12.86 7.15 -92.71 -0.66 12.20 16 34 H 0.41 8.35 8.70 -92.71 -0.81 7.54 16 35 H 0.06 1.83 7.53 -2.39 -0.02 1.81 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -57.11 341.98 2.29 -54.83 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -1.07 Total: 36.49 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 5.36 Total: -7.13 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -4.03 Total: -128.70 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -57.11 2.29 -54.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849040233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.858 kcal (2) G-P(sol) polarization free energy of solvation -57.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds