Wall clock time and date at job start Mon Mar 30 2020 08:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47251 * 2 1 4 4 H 1.08997 * 110.63981 * 51.85422 * 3 2 1 5 5 C 1.55448 * 110.86081 * 288.63542 * 3 2 1 6 6 C 1.54905 * 101.45165 * 206.07482 * 5 3 2 7 7 N 1.47419 * 104.92834 * 37.00468 * 6 5 3 8 8 C 1.37488 * 125.64843 * 155.84155 * 7 6 5 9 9 N 1.30345 * 119.99686 * 179.97438 * 8 7 6 10 10 N 1.37481 * 120.00050 * 359.96862 * 8 7 6 11 11 C 1.46501 * 120.00024 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46916 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46981 * 299.99402 * 12 11 10 14 14 C 1.52992 * 109.47587 * 59.99775 * 12 11 10 15 15 C 1.50703 * 109.47061 * 180.02562 * 12 11 10 16 16 H 1.08001 * 119.99917 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00355 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99434 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00341 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46595 * 89.99875 * 19 17 15 21 21 H 1.48494 * 109.47169 * 210.00260 * 19 17 15 22 22 H 1.48502 * 109.46925 * 330.00328 * 19 17 15 23 23 C 1.47026 * 108.70576 * 335.81449 * 7 6 5 24 24 H 1.08999 * 109.47297 * 300.00424 * 1 2 3 25 25 H 1.09001 * 109.47435 * 60.00131 * 1 2 3 26 26 H 1.08997 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46771 * 239.99566 * 2 1 3 28 28 H 1.09005 * 109.46757 * 120.00077 * 2 1 3 29 29 H 1.09002 * 111.11560 * 88.01797 * 5 3 2 30 30 H 1.09004 * 111.00873 * 324.08206 * 5 3 2 31 31 H 1.09002 * 110.36692 * 278.10842 * 6 5 3 32 32 H 1.08995 * 110.36664 * 155.89643 * 6 5 3 33 33 H 0.97007 * 119.99427 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00029 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.47031 * 299.99870 * 11 10 8 36 36 H 1.08992 * 109.47108 * 60.00049 * 11 10 8 37 37 H 1.09005 * 109.46880 * 60.00460 * 13 12 11 38 38 H 1.09000 * 109.47124 * 180.02562 * 13 12 11 39 39 H 1.08992 * 109.47390 * 300.00577 * 13 12 11 40 40 H 1.09004 * 109.47046 * 59.99575 * 14 12 11 41 41 H 1.09000 * 109.47248 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.47115 * 300.00254 * 14 12 11 43 43 H 0.96998 * 119.99922 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88266 * 120.47537 * 23 7 6 45 45 H 1.09000 * 109.88221 * 241.64354 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0147 0.8022 5 6 1.7869 2.1191 -1.3764 6 6 2.9041 3.1918 -1.4018 7 7 4.0633 2.5483 -0.7574 8 6 5.3805 2.8924 -0.9499 9 7 6.3214 2.2468 -0.3201 10 7 5.7050 3.9174 -1.8067 11 6 7.1085 4.2838 -2.0123 12 6 7.1922 5.4453 -3.0046 13 6 6.5751 5.0216 -4.3390 14 6 6.4275 6.6479 -2.4480 15 6 8.6360 5.8218 -3.2165 16 1 9.4158 5.2864 -2.6952 17 6 8.9615 6.8497 -4.0759 18 7 8.0119 7.5013 -4.7110 19 14 10.7511 7.3168 -4.3380 20 1 11.3080 6.5287 -5.4667 21 1 10.8437 8.7652 -4.6522 22 1 11.5240 7.0276 -3.1035 23 6 3.5777 1.4779 0.1258 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.8004 2.5813 -1.4113 30 1 1.9115 1.4058 -2.1913 31 1 2.5972 4.0727 -0.8379 32 1 3.1445 3.4649 -2.4293 33 1 7.2508 2.4894 -0.4562 34 1 5.0046 4.3981 -2.2752 35 1 7.5480 4.5860 -1.0617 36 1 7.6533 3.4270 -2.4084 37 1 5.5308 4.7490 -4.1860 38 1 6.6352 5.8490 -5.0461 39 1 7.1199 4.1649 -4.7355 40 1 6.8672 6.9497 -1.4973 41 1 6.4876 7.4755 -3.1547 42 1 5.3833 6.3753 -2.2950 43 1 8.2408 8.2247 -5.3153 44 1 3.9972 0.5213 -0.1857 45 1 3.8605 1.6910 1.1567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864466230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:35 Heat of formation + Delta-G solvation = 15.526658 kcal Electronic energy + Delta-G solvation = -21050.615055 eV Core-core repulsion = 18102.710508 eV Total energy + Delta-G solvation = -2947.904548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.38063 -37.52690 -35.43055 -33.51770 -31.84895 -30.16787 -29.34951 -28.56503 -25.72465 -25.63332 -24.86943 -23.11455 -22.62055 -20.25425 -19.31013 -18.44646 -17.52480 -16.14005 -15.90401 -15.44426 -14.80909 -14.72156 -14.19926 -13.93974 -13.52863 -13.32695 -13.13785 -12.91241 -12.49355 -12.28757 -12.14518 -12.03847 -11.72061 -11.38257 -11.20492 -11.13102 -10.91213 -10.80866 -10.73735 -10.68959 -10.62381 -10.30966 -10.20737 -9.59950 -9.35088 -8.84592 -8.77346 -8.41163 -7.95467 -7.35373 -6.03662 -4.14121 3.04107 3.26898 3.33989 3.37758 3.64113 4.23971 4.37815 4.50198 4.57272 4.59590 4.99216 5.14788 5.18425 5.23105 5.30293 5.39445 5.56486 5.60372 5.70378 5.79797 5.82212 5.94447 5.96382 6.06638 6.08540 6.23975 6.26134 6.37212 6.46892 6.70480 6.84178 6.94827 6.98663 7.00680 7.24502 7.38364 7.55270 7.67239 7.84581 7.99788 8.11037 8.36604 8.67577 8.86437 9.34526 9.51853 10.97746 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.046243 B = 0.003583 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.353347 B = 7812.707035 C = 8150.238296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.104 4.104 4 H 0.082 0.918 5 C -0.125 4.125 6 C 0.112 3.888 7 N -0.623 5.623 8 C 0.651 3.349 9 N -0.846 5.846 10 N -0.762 5.762 11 C 0.144 3.856 12 C 0.061 3.939 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.507 4.507 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.146 3.854 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.339 0.661 34 H 0.387 0.613 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.005 0.995 38 H 0.085 0.915 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.084 0.916 42 H 0.006 0.994 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 -9.550 5.999 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.123 4.123 4 H 0.100 0.900 5 C -0.163 4.163 6 C -0.012 4.012 7 N -0.349 5.349 8 C 0.286 3.714 9 N -0.498 5.498 10 N -0.407 5.407 11 C 0.020 3.980 12 C 0.060 3.940 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.546 4.546 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.023 3.977 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.222 0.778 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.103 0.897 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.585 -10.145 6.532 18.930 hybrid contribution 1.239 1.265 -0.954 2.011 sum -13.346 -8.881 5.578 16.973 Atomic orbital electron populations 1.21766 0.95690 1.01524 1.01872 1.21490 0.95848 0.95321 1.02420 1.22375 0.95168 0.96821 0.97893 0.89979 1.22875 0.98131 0.97915 0.97398 1.22115 0.85586 0.95677 0.97803 1.45948 1.00935 1.38320 1.49730 1.18278 0.84571 0.83566 0.84954 1.69512 1.04093 1.38358 1.37814 1.45811 1.09545 1.36768 1.48591 1.21545 0.78666 0.98413 0.99338 1.18272 0.95985 0.89400 0.90308 1.21801 0.94945 1.01023 1.00821 1.21797 0.94801 1.01843 1.00160 1.20988 0.90921 1.16877 1.25820 0.92498 1.24881 0.97266 0.95918 0.95426 1.69808 1.31449 1.22530 1.28613 0.86567 0.85164 0.77568 0.78557 1.20701 1.21243 1.19903 1.21608 0.91663 0.90555 0.93906 0.92769 0.92604 0.92838 0.91643 0.91648 0.90102 0.90569 0.92152 0.91293 0.84350 0.77836 0.93626 0.93633 0.97586 0.89672 0.95583 0.95572 0.89688 0.97542 0.92993 0.92019 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.80 37.16 0.36 -0.61 16 2 C -0.11 -0.86 5.29 -26.73 -0.14 -1.00 16 3 C -0.10 -0.93 2.92 -88.63 -0.26 -1.19 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.13 -1.11 5.97 -24.43 -0.15 -1.26 16 6 C 0.11 1.31 6.63 -2.53 -0.02 1.30 16 7 N -0.62 -9.30 3.41 -172.26 -0.59 -9.88 16 8 C 0.65 11.95 8.62 -320.08 -2.76 9.19 16 9 N -0.85 -16.73 13.55 30.15 0.41 -16.32 16 10 N -0.76 -14.24 5.03 -61.79 -0.31 -14.55 16 11 C 0.14 3.04 3.85 -4.04 -0.02 3.02 16 12 C 0.06 1.43 0.50 -155.66 -0.08 1.35 16 13 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 14 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 15 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 19 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.15 1.85 6.47 -3.06 -0.02 1.83 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.35 7.69 -51.93 -0.40 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.53 8.01 -51.93 -0.42 0.11 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 33 H 0.34 6.82 7.15 -40.82 -0.29 6.52 16 34 H 0.39 6.93 4.79 -40.82 -0.20 6.74 16 35 H 0.05 0.99 7.97 -51.93 -0.41 0.58 16 36 H 0.05 0.99 7.97 -51.93 -0.41 0.58 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 38 H 0.08 2.15 6.07 -51.93 -0.31 1.84 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -27.73 343.50 -10.68 -38.40 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.02 Total: 9.25 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.84 Total: -4.59 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.03 Total: -63.95 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.73 -10.68 -38.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864466230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.931 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds