Wall clock time and date at job start Mon Mar 30 2020 08:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47251 * 2 1 4 4 H 1.08997 * 110.63981 * 51.85422 * 3 2 1 5 5 C 1.55448 * 110.86081 * 288.63542 * 3 2 1 6 6 C 1.54905 * 101.45165 * 206.07482 * 5 3 2 7 7 N 1.47419 * 104.92834 * 37.00468 * 6 5 3 8 8 C 1.37488 * 125.64843 * 155.84155 * 7 6 5 9 9 N 1.30345 * 119.99686 * 179.97438 * 8 7 6 10 10 N 1.37481 * 120.00050 * 359.96862 * 8 7 6 11 11 C 1.46501 * 120.00024 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46916 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46981 * 299.99402 * 12 11 10 14 14 C 1.52992 * 109.47587 * 59.99775 * 12 11 10 15 15 C 1.50703 * 109.47061 * 180.02562 * 12 11 10 16 16 H 1.08001 * 119.99917 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00355 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99434 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00341 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46595 * 89.99875 * 19 17 15 21 21 H 1.48494 * 109.47169 * 210.00260 * 19 17 15 22 22 H 1.48502 * 109.46925 * 330.00328 * 19 17 15 23 23 C 1.47026 * 108.70576 * 335.81449 * 7 6 5 24 24 H 1.08999 * 109.47297 * 300.00424 * 1 2 3 25 25 H 1.09001 * 109.47435 * 60.00131 * 1 2 3 26 26 H 1.08997 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46771 * 239.99566 * 2 1 3 28 28 H 1.09005 * 109.46757 * 120.00077 * 2 1 3 29 29 H 1.09002 * 111.11560 * 88.01797 * 5 3 2 30 30 H 1.09004 * 111.00873 * 324.08206 * 5 3 2 31 31 H 1.09002 * 110.36692 * 278.10842 * 6 5 3 32 32 H 1.08995 * 110.36664 * 155.89643 * 6 5 3 33 33 H 0.97007 * 119.99427 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00029 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.47031 * 299.99870 * 11 10 8 36 36 H 1.08992 * 109.47108 * 60.00049 * 11 10 8 37 37 H 1.09005 * 109.46880 * 60.00460 * 13 12 11 38 38 H 1.09000 * 109.47124 * 180.02562 * 13 12 11 39 39 H 1.08992 * 109.47390 * 300.00577 * 13 12 11 40 40 H 1.09004 * 109.47046 * 59.99575 * 14 12 11 41 41 H 1.09000 * 109.47248 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.47115 * 300.00254 * 14 12 11 43 43 H 0.96998 * 119.99922 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88266 * 120.47537 * 23 7 6 45 45 H 1.09000 * 109.88221 * 241.64354 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0147 0.8022 5 6 1.7869 2.1191 -1.3764 6 6 2.9041 3.1918 -1.4018 7 7 4.0633 2.5483 -0.7574 8 6 5.3805 2.8924 -0.9499 9 7 6.3214 2.2468 -0.3201 10 7 5.7050 3.9174 -1.8067 11 6 7.1085 4.2838 -2.0123 12 6 7.1922 5.4453 -3.0046 13 6 6.5751 5.0216 -4.3390 14 6 6.4275 6.6479 -2.4480 15 6 8.6360 5.8218 -3.2165 16 1 9.4158 5.2864 -2.6952 17 6 8.9615 6.8497 -4.0759 18 7 8.0119 7.5013 -4.7110 19 14 10.7511 7.3168 -4.3380 20 1 11.3080 6.5287 -5.4667 21 1 10.8437 8.7652 -4.6522 22 1 11.5240 7.0276 -3.1035 23 6 3.5777 1.4779 0.1258 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.8004 2.5813 -1.4113 30 1 1.9115 1.4058 -2.1913 31 1 2.5972 4.0727 -0.8379 32 1 3.1445 3.4649 -2.4293 33 1 7.2508 2.4894 -0.4562 34 1 5.0046 4.3981 -2.2752 35 1 7.5480 4.5860 -1.0617 36 1 7.6533 3.4270 -2.4084 37 1 5.5308 4.7490 -4.1860 38 1 6.6352 5.8490 -5.0461 39 1 7.1199 4.1649 -4.7355 40 1 6.8672 6.9497 -1.4973 41 1 6.4876 7.4755 -3.1547 42 1 5.3833 6.3753 -2.2950 43 1 8.2408 8.2247 -5.3153 44 1 3.9972 0.5213 -0.1857 45 1 3.8605 1.6910 1.1567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864466230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:34 Heat of formation + Delta-G solvation = 3.164692 kcal Electronic energy + Delta-G solvation = -21051.151110 eV Core-core repulsion = 18102.710508 eV Total energy + Delta-G solvation = -2948.440603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50596 -38.99381 -36.94057 -34.61192 -33.50903 -31.72682 -30.39052 -29.52808 -27.60919 -27.47009 -26.57630 -24.05849 -23.53482 -21.05823 -20.80049 -20.07669 -18.95808 -17.75143 -17.30218 -16.76983 -16.54165 -15.66993 -15.38615 -15.23891 -14.89847 -14.61345 -14.45608 -14.02660 -13.95432 -13.58568 -13.28561 -13.11368 -12.97304 -12.86869 -12.75600 -12.59969 -12.45089 -12.15294 -12.10463 -12.00964 -11.67959 -11.49023 -11.44840 -11.30965 -11.21975 -10.74107 -10.41079 -10.32368 -9.33876 -8.77441 -8.04232 -6.20455 1.41761 1.44517 1.52556 1.78691 2.19044 2.43962 2.96676 3.19628 3.63230 3.70476 3.89815 4.31700 4.35289 4.39572 4.46075 4.47953 4.59832 4.64604 4.65824 4.73195 4.88211 4.91032 4.97349 4.99491 5.01498 5.07561 5.10747 5.14683 5.15420 5.27123 5.30019 5.36968 5.44169 5.57145 5.62839 5.64569 5.68397 5.93690 6.09826 6.18004 6.40230 6.40331 6.84301 7.24941 7.47569 7.85769 8.95010 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.046243 B = 0.003583 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.353347 B = 7812.707035 C = 8150.238296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.091 4.091 4 H 0.094 0.906 5 C -0.114 4.114 6 C 0.103 3.897 7 N -0.625 5.625 8 C 0.646 3.354 9 N -0.867 5.867 10 N -0.757 5.757 11 C 0.162 3.838 12 C 0.057 3.943 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.529 4.529 16 H 0.048 0.952 17 C 0.027 3.973 18 N -0.901 5.901 19 Si 0.947 3.053 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.142 3.858 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.332 0.668 34 H 0.392 0.608 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.029 0.971 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.260 0.740 44 H 0.049 0.951 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.516 -9.919 6.189 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.110 4.110 4 H 0.112 0.888 5 C -0.152 4.152 6 C -0.020 4.020 7 N -0.351 5.351 8 C 0.281 3.719 9 N -0.519 5.519 10 N -0.403 5.403 11 C 0.037 3.963 12 C 0.056 3.944 13 C -0.175 4.175 14 C -0.175 4.175 15 C -0.568 4.568 16 H 0.066 0.934 17 C -0.172 4.172 18 N -0.539 5.539 19 Si 0.773 3.227 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.199 1.199 23 C 0.019 3.981 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.228 0.772 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.452 -10.522 6.722 20.654 hybrid contribution 1.777 1.358 -0.993 2.447 sum -14.675 -9.164 5.729 18.225 Atomic orbital electron populations 1.21742 0.94337 1.02084 1.02377 1.21466 0.96899 0.94194 1.02241 1.22337 0.92143 0.98021 0.98488 0.88766 1.22876 0.98290 0.96982 0.97066 1.22398 0.85248 0.96877 0.97472 1.46265 1.00313 1.38670 1.49815 1.18535 0.85863 0.83082 0.84388 1.69563 1.04048 1.39302 1.39017 1.45582 1.08562 1.37142 1.48972 1.21132 0.79967 0.97113 0.98058 1.18268 0.94800 0.90278 0.91066 1.21634 0.96275 0.99651 0.99899 1.21631 0.96138 1.00818 0.98890 1.21286 0.92299 1.17162 1.26022 0.93397 1.25480 1.00436 0.95984 0.95345 1.69915 1.32659 1.22624 1.28736 0.85731 0.81387 0.77264 0.78270 1.20485 1.20896 1.19908 1.21761 0.94320 0.89262 0.92769 0.92238 0.92092 0.92345 0.92178 0.91630 0.87337 0.90627 0.91223 0.91571 0.85160 0.77211 0.94633 0.94617 0.95174 0.91920 0.96422 0.96398 0.91932 0.95148 0.93026 0.93266 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.80 71.98 0.71 -0.76 16 2 C -0.11 -1.43 5.29 30.59 0.16 -1.27 16 3 C -0.09 -1.41 2.92 -9.50 -0.03 -1.44 16 4 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.11 -1.68 5.97 32.09 0.19 -1.49 16 6 C 0.10 2.17 6.63 86.85 0.58 2.75 16 7 N -0.63 -17.90 3.41 -698.92 -2.39 -20.28 16 8 C 0.65 23.37 8.62 260.53 2.25 25.61 16 9 N -0.87 -34.46 13.55 -58.53 -0.79 -35.25 16 10 N -0.76 -27.69 5.03 -349.41 -1.76 -29.44 16 11 C 0.16 6.84 3.85 86.38 0.33 7.17 16 12 C 0.06 2.64 0.50 -52.93 -0.03 2.61 16 13 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 14 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 15 C -0.53 -27.92 8.01 25.60 0.21 -27.72 16 16 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 17 C 0.03 1.44 5.15 84.65 0.44 1.87 16 18 N -0.90 -48.33 9.35 21.45 0.20 -48.13 16 19 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 C 0.14 3.44 6.47 86.73 0.56 4.01 16 24 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.55 7.69 -2.39 -0.02 0.53 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.86 8.01 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.16 7.96 -2.38 -0.02 1.14 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.44 7.36 -2.39 -0.02 1.42 16 33 H 0.33 13.58 7.15 -92.70 -0.66 12.92 16 34 H 0.39 13.43 4.79 -92.71 -0.44 12.98 16 35 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 36 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 37 H 0.03 1.18 6.86 -2.38 -0.02 1.16 16 38 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 42 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 43 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 44 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -58.97 343.50 3.67 -55.30 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.15 Total: 31.37 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 6.52 Total: 1.86 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -4.73 Total: -133.11 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -58.97 3.67 -55.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864466230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.462 kcal (2) G-P(sol) polarization free energy of solvation -58.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds