Wall clock time and date at job start Mon Mar 30 2020 08:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46824 * 2 1 4 4 H 1.08998 * 110.78337 * 308.23741 * 3 2 1 5 5 C 1.55155 * 110.72348 * 71.47774 * 3 2 1 6 6 C 1.54907 * 101.58383 * 153.86012 * 5 3 2 7 7 N 1.47420 * 104.83524 * 322.99460 * 6 5 3 8 8 C 1.37485 * 125.65036 * 204.16174 * 7 6 5 9 9 N 1.30337 * 119.99996 * 179.97438 * 8 7 6 10 10 N 1.37488 * 119.99963 * 359.95745 * 8 7 6 11 11 C 1.46498 * 119.99853 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46869 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47346 * 300.00500 * 12 11 10 14 14 C 1.52999 * 109.47102 * 60.00737 * 12 11 10 15 15 C 1.50703 * 109.47006 * 180.02562 * 12 11 10 16 16 H 1.08004 * 120.00031 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00155 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99822 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00271 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.46893 * 89.99901 * 19 17 15 21 21 H 1.48495 * 109.47135 * 209.99847 * 19 17 15 22 22 H 1.48497 * 109.46839 * 330.00202 * 19 17 15 23 23 C 1.47026 * 108.70428 * 24.12518 * 7 6 5 24 24 H 1.08996 * 109.47221 * 299.99925 * 1 2 3 25 25 H 1.09004 * 109.47303 * 60.00231 * 1 2 3 26 26 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46896 * 239.99896 * 2 1 3 28 28 H 1.09000 * 109.46672 * 120.00105 * 2 1 3 29 29 H 1.09001 * 111.00015 * 35.78757 * 5 3 2 30 30 H 1.09000 * 111.00890 * 271.93975 * 5 3 2 31 31 H 1.08997 * 110.36783 * 204.15179 * 6 5 3 32 32 H 1.08997 * 110.45914 * 81.87830 * 6 5 3 33 33 H 0.97004 * 119.99917 * 179.97438 * 9 8 7 34 34 H 0.97001 * 119.99909 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47352 * 300.00407 * 11 10 8 36 36 H 1.09002 * 109.46760 * 60.00231 * 11 10 8 37 37 H 1.08991 * 109.47546 * 59.99602 * 13 12 11 38 38 H 1.09003 * 109.47392 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47137 * 299.99642 * 13 12 11 40 40 H 1.08998 * 109.47254 * 59.99471 * 14 12 11 41 41 H 1.08996 * 109.47134 * 180.02562 * 14 12 11 42 42 H 1.09005 * 109.46807 * 299.99945 * 14 12 11 43 43 H 0.96992 * 119.99981 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88351 * 118.35702 * 23 7 6 45 45 H 1.08998 * 109.88379 * 239.52492 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5742 2.0173 -0.8004 5 6 1.7883 2.1137 1.3760 6 6 2.9046 3.1873 1.4071 7 7 4.0636 2.5456 0.7606 8 6 5.3808 2.8881 0.9549 9 7 6.3217 2.2437 0.3237 10 7 5.7056 3.9105 1.8148 11 6 7.1093 4.2751 2.0222 12 6 7.1934 5.4339 3.0177 13 6 6.4300 6.6386 2.4639 14 6 6.5750 5.0071 4.3506 15 6 8.6372 5.8094 3.2307 16 1 9.4169 5.2752 2.7080 17 6 8.9630 6.8348 4.0929 18 7 8.0136 7.4856 4.7291 19 14 10.7526 7.3007 4.3564 20 1 11.1443 8.3389 3.3695 21 1 10.9282 7.8335 5.7313 22 1 11.6081 6.1001 4.1777 23 6 3.5777 1.4780 -0.1258 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9121 1.3977 2.1884 30 1 0.8013 2.5751 1.4111 31 1 3.1444 3.4554 2.4360 32 1 2.5990 4.0710 0.8470 33 1 7.2511 2.4856 0.4606 34 1 5.0054 4.3900 2.2846 35 1 7.6532 3.4167 2.4164 36 1 7.5497 4.5796 1.0728 37 1 5.3857 6.3673 2.3095 38 1 6.4902 7.4643 3.1729 39 1 6.8705 6.9427 1.5144 40 1 7.1189 4.1489 4.7452 41 1 6.6345 5.8328 5.0596 42 1 5.5307 4.7358 4.1962 43 1 8.2427 8.2067 5.3359 44 1 3.8604 1.6942 -1.1561 45 1 3.9971 0.5204 0.1827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864466231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:38 Heat of formation + Delta-G solvation = 15.511410 kcal Electronic energy + Delta-G solvation = -21051.890216 eV Core-core repulsion = 18103.985008 eV Total energy + Delta-G solvation = -2947.905209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.39187 -37.53234 -35.43400 -33.51813 -31.84888 -30.16728 -29.35346 -28.56334 -25.72464 -25.63378 -24.87017 -23.11394 -22.62506 -20.25491 -19.31088 -18.44661 -17.52520 -16.14084 -15.90493 -15.44456 -14.80893 -14.72271 -14.20111 -13.93913 -13.52819 -13.32702 -13.13908 -12.91264 -12.49485 -12.28810 -12.14610 -12.03903 -11.72115 -11.38362 -11.20472 -11.13039 -10.90934 -10.80943 -10.72980 -10.69556 -10.62760 -10.30976 -10.20747 -9.59940 -9.35077 -8.84584 -8.77339 -8.41152 -7.95453 -7.35379 -6.03643 -4.14111 3.04139 3.26903 3.34010 3.37768 3.64156 4.24054 4.37915 4.50440 4.57126 4.59653 4.99256 5.14730 5.18494 5.23108 5.30395 5.39556 5.56495 5.60338 5.70378 5.79849 5.82208 5.94442 5.96419 6.06694 6.08614 6.24051 6.26131 6.37212 6.46880 6.70501 6.84176 6.94825 6.98666 7.00683 7.24506 7.38380 7.55297 7.67246 7.84596 7.99757 8.11040 8.36593 8.67598 8.86446 9.34565 9.51862 10.97772 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.003583 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.325825 B = 7811.819642 C = 8149.052508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.104 4.104 4 H 0.082 0.918 5 C -0.125 4.125 6 C 0.112 3.888 7 N -0.623 5.623 8 C 0.651 3.349 9 N -0.846 5.846 10 N -0.762 5.762 11 C 0.144 3.856 12 C 0.061 3.939 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.507 4.507 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.146 3.854 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.339 0.661 34 H 0.387 0.613 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.006 0.994 38 H 0.084 0.916 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 -9.539 -6.019 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.123 4.123 4 H 0.100 0.900 5 C -0.163 4.163 6 C -0.012 4.012 7 N -0.349 5.349 8 C 0.286 3.714 9 N -0.498 5.498 10 N -0.407 5.407 11 C 0.020 3.980 12 C 0.060 3.940 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.546 4.546 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.023 3.977 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.222 0.778 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.103 0.897 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.588 -10.138 -6.547 18.933 hybrid contribution 1.238 1.276 0.942 2.012 sum -13.350 -8.862 -5.605 16.975 Atomic orbital electron populations 1.21767 0.95691 1.01526 1.01872 1.21492 0.95848 0.95312 1.02422 1.22327 0.95186 0.96842 0.97902 0.89954 1.22828 0.98150 0.97942 0.97411 1.22120 0.85573 0.95693 0.97787 1.45951 1.00930 1.38568 1.49493 1.18278 0.84571 0.83581 0.84940 1.69507 1.04098 1.38364 1.37807 1.45813 1.09536 1.37006 1.48365 1.21546 0.78662 0.98426 0.99328 1.18272 0.95985 0.89412 0.90296 1.21800 0.94800 1.01829 1.00180 1.21797 0.94945 1.00998 1.00836 1.20989 0.90923 1.17034 1.25658 0.92497 1.24882 0.97270 0.95928 0.95413 1.69806 1.31464 1.22606 1.28525 0.86568 0.85171 0.78751 0.77365 1.20701 1.21245 1.19903 1.21610 0.91663 0.90613 0.93850 0.92598 0.92774 0.92837 0.91653 0.91637 0.90565 0.90124 0.91295 0.92136 0.84349 0.77837 0.93632 0.93630 0.97547 0.89684 0.95580 0.95570 0.89681 0.97586 0.92993 0.92272 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.80 37.16 0.36 -0.61 16 2 C -0.11 -0.86 5.29 -26.73 -0.14 -1.00 16 3 C -0.10 -0.93 2.93 -88.79 -0.26 -1.19 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.13 -1.11 5.93 -24.58 -0.15 -1.26 16 6 C 0.11 1.31 6.64 -2.53 -0.02 1.30 16 7 N -0.62 -9.30 3.41 -172.26 -0.59 -9.88 16 8 C 0.65 11.95 8.62 -320.09 -2.76 9.19 16 9 N -0.85 -16.73 13.55 30.15 0.41 -16.32 16 10 N -0.76 -14.24 5.03 -61.79 -0.31 -14.55 16 11 C 0.14 3.04 3.85 -4.04 -0.02 3.02 16 12 C 0.06 1.43 0.50 -155.66 -0.08 1.35 16 13 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 14 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 15 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 19 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.15 1.85 6.48 -3.06 -0.02 1.83 16 24 H 0.05 0.35 7.69 -51.93 -0.40 -0.05 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 29 H 0.08 0.69 7.94 -51.93 -0.41 0.28 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.34 6.82 7.14 -40.82 -0.29 6.52 16 34 H 0.39 6.93 4.80 -40.82 -0.20 6.74 16 35 H 0.05 0.99 7.97 -51.93 -0.41 0.58 16 36 H 0.05 0.99 7.97 -51.93 -0.41 0.58 16 37 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 38 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -27.73 343.44 -10.68 -38.41 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.02 Total: 9.25 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.84 Total: -4.59 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.03 Total: -63.95 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.73 -10.68 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864466231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.917 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds