Wall clock time and date at job start Mon Mar 30 2020 08:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46824 * 2 1 4 4 H 1.08998 * 110.78337 * 308.23741 * 3 2 1 5 5 C 1.55155 * 110.72348 * 71.47774 * 3 2 1 6 6 C 1.54907 * 101.58383 * 153.86012 * 5 3 2 7 7 N 1.47420 * 104.83524 * 322.99460 * 6 5 3 8 8 C 1.37485 * 125.65036 * 204.16174 * 7 6 5 9 9 N 1.30337 * 119.99996 * 179.97438 * 8 7 6 10 10 N 1.37488 * 119.99963 * 359.95745 * 8 7 6 11 11 C 1.46498 * 119.99853 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46869 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47346 * 300.00500 * 12 11 10 14 14 C 1.52999 * 109.47102 * 60.00737 * 12 11 10 15 15 C 1.50703 * 109.47006 * 180.02562 * 12 11 10 16 16 H 1.08004 * 120.00031 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00155 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99822 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00271 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.46893 * 89.99901 * 19 17 15 21 21 H 1.48495 * 109.47135 * 209.99847 * 19 17 15 22 22 H 1.48497 * 109.46839 * 330.00202 * 19 17 15 23 23 C 1.47026 * 108.70428 * 24.12518 * 7 6 5 24 24 H 1.08996 * 109.47221 * 299.99925 * 1 2 3 25 25 H 1.09004 * 109.47303 * 60.00231 * 1 2 3 26 26 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46896 * 239.99896 * 2 1 3 28 28 H 1.09000 * 109.46672 * 120.00105 * 2 1 3 29 29 H 1.09001 * 111.00015 * 35.78757 * 5 3 2 30 30 H 1.09000 * 111.00890 * 271.93975 * 5 3 2 31 31 H 1.08997 * 110.36783 * 204.15179 * 6 5 3 32 32 H 1.08997 * 110.45914 * 81.87830 * 6 5 3 33 33 H 0.97004 * 119.99917 * 179.97438 * 9 8 7 34 34 H 0.97001 * 119.99909 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47352 * 300.00407 * 11 10 8 36 36 H 1.09002 * 109.46760 * 60.00231 * 11 10 8 37 37 H 1.08991 * 109.47546 * 59.99602 * 13 12 11 38 38 H 1.09003 * 109.47392 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47137 * 299.99642 * 13 12 11 40 40 H 1.08998 * 109.47254 * 59.99471 * 14 12 11 41 41 H 1.08996 * 109.47134 * 180.02562 * 14 12 11 42 42 H 1.09005 * 109.46807 * 299.99945 * 14 12 11 43 43 H 0.96992 * 119.99981 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88351 * 118.35702 * 23 7 6 45 45 H 1.08998 * 109.88379 * 239.52492 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5742 2.0173 -0.8004 5 6 1.7883 2.1137 1.3760 6 6 2.9046 3.1873 1.4071 7 7 4.0636 2.5456 0.7606 8 6 5.3808 2.8881 0.9549 9 7 6.3217 2.2437 0.3237 10 7 5.7056 3.9105 1.8148 11 6 7.1093 4.2751 2.0222 12 6 7.1934 5.4339 3.0177 13 6 6.4300 6.6386 2.4639 14 6 6.5750 5.0071 4.3506 15 6 8.6372 5.8094 3.2307 16 1 9.4169 5.2752 2.7080 17 6 8.9630 6.8348 4.0929 18 7 8.0136 7.4856 4.7291 19 14 10.7526 7.3007 4.3564 20 1 11.1443 8.3389 3.3695 21 1 10.9282 7.8335 5.7313 22 1 11.6081 6.1001 4.1777 23 6 3.5777 1.4780 -0.1258 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9121 1.3977 2.1884 30 1 0.8013 2.5751 1.4111 31 1 3.1444 3.4554 2.4360 32 1 2.5990 4.0710 0.8470 33 1 7.2511 2.4856 0.4606 34 1 5.0054 4.3900 2.2846 35 1 7.6532 3.4167 2.4164 36 1 7.5497 4.5796 1.0728 37 1 5.3857 6.3673 2.3095 38 1 6.4902 7.4643 3.1729 39 1 6.8705 6.9427 1.5144 40 1 7.1189 4.1489 4.7452 41 1 6.6345 5.8328 5.0596 42 1 5.5307 4.7358 4.1962 43 1 8.2427 8.2067 5.3359 44 1 3.8604 1.6942 -1.1561 45 1 3.9971 0.5204 0.1827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864466231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:38 Heat of formation + Delta-G solvation = 3.147046 kcal Electronic energy + Delta-G solvation = -21052.426375 eV Core-core repulsion = 18103.985008 eV Total energy + Delta-G solvation = -2948.441368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51387 -39.00034 -36.94488 -34.61381 -33.50887 -31.72657 -30.39303 -29.52671 -27.60921 -27.47043 -26.57711 -24.06113 -23.53580 -21.05926 -20.80084 -20.07716 -18.95845 -17.75148 -17.30222 -16.77108 -16.54187 -15.67025 -15.38707 -15.23974 -14.89796 -14.61344 -14.45552 -14.02699 -13.95636 -13.58671 -13.28631 -13.11371 -12.97292 -12.86583 -12.76022 -12.60017 -12.45010 -12.15304 -12.10520 -12.01064 -11.67583 -11.48999 -11.44817 -11.31295 -11.21969 -10.74123 -10.41080 -10.32342 -9.33864 -8.77445 -8.04224 -6.20449 1.41758 1.44530 1.52575 1.78732 2.19089 2.43974 2.96717 3.19626 3.63599 3.70284 3.89956 4.31726 4.35302 4.39563 4.46080 4.48150 4.59772 4.64777 4.65872 4.73192 4.88215 4.91000 4.97503 4.99449 5.01484 5.07600 5.10758 5.14679 5.15407 5.27135 5.30151 5.36954 5.44198 5.57213 5.62861 5.64568 5.68415 5.93695 6.09791 6.18006 6.40246 6.40319 6.84309 7.24963 7.47573 7.85807 8.95024 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.003583 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.325825 B = 7811.819642 C = 8149.052508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.091 4.091 4 H 0.094 0.906 5 C -0.114 4.114 6 C 0.103 3.897 7 N -0.625 5.625 8 C 0.646 3.354 9 N -0.867 5.867 10 N -0.757 5.757 11 C 0.162 3.838 12 C 0.057 3.943 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.529 4.529 16 H 0.048 0.952 17 C 0.027 3.973 18 N -0.901 5.901 19 Si 0.947 3.053 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.142 3.858 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.332 0.668 34 H 0.392 0.608 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.048 0.952 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.518 -9.904 -6.215 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.110 4.110 4 H 0.113 0.887 5 C -0.152 4.152 6 C -0.020 4.020 7 N -0.351 5.351 8 C 0.281 3.719 9 N -0.519 5.519 10 N -0.403 5.403 11 C 0.037 3.963 12 C 0.056 3.944 13 C -0.175 4.175 14 C -0.174 4.174 15 C -0.568 4.568 16 H 0.066 0.934 17 C -0.172 4.172 18 N -0.539 5.539 19 Si 0.773 3.227 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.199 1.199 23 C 0.019 3.981 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.228 0.772 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.454 -10.511 -6.744 20.656 hybrid contribution 1.776 1.369 0.982 2.448 sum -14.678 -9.141 -5.762 18.227 Atomic orbital electron populations 1.21743 0.94337 1.02086 1.02377 1.21467 0.96899 0.94186 1.02241 1.22290 0.92158 0.98042 0.98493 0.88737 1.22829 0.98313 0.97012 0.97083 1.22404 0.85233 0.96895 0.97451 1.46268 1.00307 1.38910 1.49587 1.18534 0.85864 0.83096 0.84375 1.69558 1.04054 1.39313 1.39007 1.45583 1.08552 1.37380 1.48746 1.21132 0.79962 0.97119 0.98056 1.18267 0.94800 0.90284 0.91060 1.21634 0.96138 1.00810 0.98901 1.21630 0.96277 0.99633 0.99908 1.21287 0.92301 1.17319 1.25863 0.93395 1.25480 1.00440 0.95990 0.95334 1.69914 1.32677 1.22700 1.28646 0.85731 0.81394 0.78288 0.77239 1.20492 1.20897 1.19900 1.21764 0.94322 0.89319 0.92713 0.92085 0.92242 0.92346 0.91636 0.92173 0.90624 0.87361 0.91572 0.91210 0.85158 0.77213 0.94636 0.94617 0.95154 0.91929 0.96417 0.96398 0.91930 0.95175 0.93025 0.93407 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.80 71.98 0.71 -0.76 16 2 C -0.11 -1.43 5.29 30.59 0.16 -1.27 16 3 C -0.09 -1.41 2.93 -9.61 -0.03 -1.44 16 4 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.11 -1.68 5.93 31.98 0.19 -1.49 16 6 C 0.10 2.17 6.64 86.86 0.58 2.75 16 7 N -0.63 -17.90 3.41 -698.91 -2.38 -20.28 16 8 C 0.65 23.36 8.62 260.54 2.25 25.61 16 9 N -0.87 -34.46 13.55 -58.53 -0.79 -35.25 16 10 N -0.76 -27.69 5.03 -349.41 -1.76 -29.45 16 11 C 0.16 6.84 3.85 86.38 0.33 7.17 16 12 C 0.06 2.64 0.50 -52.93 -0.03 2.61 16 13 C -0.12 -5.34 8.08 71.98 0.58 -4.75 16 14 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 15 C -0.53 -27.92 8.01 25.60 0.21 -27.72 16 16 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 17 C 0.03 1.44 5.15 84.66 0.44 1.87 16 18 N -0.90 -48.34 9.35 21.45 0.20 -48.14 16 19 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.14 3.44 6.48 86.73 0.56 4.00 16 24 H 0.06 0.55 7.69 -2.39 -0.02 0.53 16 25 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.00 -2.39 -0.02 0.84 16 29 H 0.08 1.16 7.94 -2.39 -0.02 1.14 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.44 7.36 -2.39 -0.02 1.42 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.33 13.58 7.14 -92.71 -0.66 12.92 16 34 H 0.39 13.43 4.80 -92.71 -0.44 12.98 16 35 H 0.04 1.56 7.97 -2.39 -0.02 1.54 16 36 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 37 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 38 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 42 H 0.03 1.18 6.86 -2.38 -0.02 1.16 16 43 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 Total: -1.00 -58.97 343.44 3.67 -55.30 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.15 Total: 31.37 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 6.52 Total: 1.86 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -4.73 Total: -133.11 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -58.97 3.67 -55.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864466231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.447 kcal (2) G-P(sol) polarization free energy of solvation -58.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds