Wall clock time and date at job start Mon Mar 30 2020 08:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47480 * 2 1 4 4 C 1.53000 * 109.47517 * 239.99671 * 2 1 3 5 5 C 1.50707 * 109.47039 * 59.99935 * 4 2 1 6 6 H 1.08002 * 119.99792 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00274 * 180.02562 * 5 4 2 8 8 N 1.31525 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00396 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47505 * 89.99695 * 9 7 5 11 11 H 1.48496 * 109.47375 * 210.00414 * 9 7 5 12 12 H 1.48507 * 109.46816 * 329.99935 * 9 7 5 13 13 C 1.53004 * 109.47090 * 120.00012 * 2 1 3 14 14 N 1.46507 * 109.46773 * 299.99965 * 13 2 1 15 15 C 1.37485 * 119.99630 * 179.97438 * 14 13 2 16 16 N 1.30340 * 119.99900 * 0.02562 * 15 14 13 17 17 N 1.37485 * 119.99488 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99597 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46691 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46626 * 179.97438 * 19 18 17 21 21 C 1.53003 * 117.49663 * 243.74292 * 20 19 18 22 22 C 1.53002 * 117.49643 * 175.08260 * 20 19 18 23 23 H 1.08991 * 109.47593 * 300.00328 * 1 2 3 24 24 H 1.09008 * 109.46837 * 60.00066 * 1 2 3 25 25 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47728 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47031 * 299.99815 * 3 2 1 28 28 H 1.09005 * 109.47339 * 59.99734 * 3 2 1 29 29 H 1.08997 * 109.47627 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47327 * 300.00424 * 4 2 1 31 31 H 0.96998 * 119.99859 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47266 * 180.02562 * 13 2 1 33 33 H 1.08997 * 109.46955 * 59.99581 * 13 2 1 34 34 H 0.96999 * 120.00184 * 0.02562 * 14 13 2 35 35 H 0.96991 * 120.00594 * 0.02562 * 16 15 14 36 36 H 0.96999 * 120.00327 * 359.97438 * 17 15 14 37 37 H 1.08993 * 109.47068 * 59.99613 * 18 17 15 38 38 H 1.09000 * 109.46872 * 299.99824 * 18 17 15 39 39 H 1.08993 * 109.47839 * 59.99891 * 19 18 17 40 40 H 1.09000 * 109.47160 * 299.99453 * 19 18 17 41 41 H 1.09002 * 115.55153 * 29.41498 * 20 19 18 42 42 H 1.08998 * 117.49856 * 0.02562 * 21 20 19 43 43 H 1.09000 * 117.49861 * 145.02337 * 21 20 19 44 44 H 1.08993 * 117.50251 * 214.97577 * 22 20 19 45 45 H 1.09003 * 117.49715 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8704 -0.4823 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2484 0.3986 -5.2572 10 1 2.2272 1.4396 -5.6615 11 1 1.0825 -0.5805 -6.3613 12 1 -0.0594 1.0371 -4.9613 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8833 -0.5006 3.6941 16 7 2.6326 -1.5603 3.8137 17 7 1.4245 0.1473 4.8166 18 6 1.7784 -0.3532 6.1473 19 6 1.1441 0.5416 7.2140 20 6 1.5132 0.0185 8.6036 21 6 0.3749 -0.4812 9.4956 22 6 1.0687 0.8464 9.8111 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7490 -1.2492 31 1 2.8610 -1.8830 -4.7335 32 1 3.1299 -0.7209 1.2495 33 1 1.6765 -1.7489 1.2493 34 1 0.9936 0.7579 2.3564 35 1 2.9565 -2.0172 3.0218 36 1 0.8671 0.9362 4.7276 37 1 2.8622 -0.3442 6.2624 38 1 1.4093 -1.3724 6.2621 39 1 0.0603 0.5322 7.0987 40 1 1.5128 1.5609 7.0993 41 1 2.4705 -0.4981 8.6726 42 1 -0.6367 -0.4377 9.0923 43 1 0.5835 -1.3264 10.1517 44 1 1.7333 0.8741 10.6745 45 1 0.5129 1.7634 9.6154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864468766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:24 Heat of formation + Delta-G solvation = 27.646380 kcal Electronic energy + Delta-G solvation = -20065.979853 eV Core-core repulsion = 17118.600856 eV Total energy + Delta-G solvation = -2947.378997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.86926 -38.02192 -36.67042 -34.12579 -32.41029 -30.58564 -29.77683 -27.05604 -26.51838 -26.05277 -23.59720 -22.72365 -22.49746 -20.95732 -19.89039 -18.43085 -17.39229 -16.41691 -15.91214 -15.88469 -15.14177 -14.76457 -14.48695 -14.37082 -14.15013 -13.63406 -13.08058 -13.05228 -12.73690 -12.31058 -12.09032 -12.01190 -11.85039 -11.64507 -11.42236 -11.04943 -10.92621 -10.86983 -10.64222 -10.56752 -10.42080 -10.27124 -10.19732 -9.86980 -9.25364 -9.03421 -8.95719 -8.44227 -8.37954 -7.70714 -6.02141 -4.03392 2.99147 3.29467 3.36564 3.38353 3.43194 3.47540 4.25108 4.42178 4.45169 4.57313 4.60333 4.93462 5.14515 5.28301 5.32656 5.33383 5.38296 5.43847 5.57697 5.58824 5.73435 5.78120 5.82389 5.96268 6.00421 6.09303 6.13970 6.15501 6.25666 6.36147 6.59501 6.61719 6.83862 7.04056 7.05403 7.10233 7.24321 7.55386 7.60675 7.73032 7.96328 8.31784 8.38471 9.01149 9.13614 9.59828 11.09305 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.056478 B = 0.002679 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.650438 B =10447.852846 C =10663.501965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.068 4.068 3 C -0.125 4.125 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.140 3.860 14 N -0.768 5.768 15 C 0.631 3.369 16 N -0.838 5.838 17 N -0.735 5.735 18 C 0.157 3.843 19 C -0.103 4.103 20 C -0.147 4.147 21 C -0.181 4.181 22 C -0.182 4.182 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.387 0.613 35 H 0.339 0.661 36 H 0.397 0.603 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 5.613 21.926 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.016 3.984 14 N -0.413 5.413 15 C 0.264 3.736 16 N -0.489 5.489 17 N -0.378 5.378 18 C 0.033 3.967 19 C -0.141 4.141 20 C -0.166 4.166 21 C -0.218 4.218 22 C -0.219 4.219 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.221 0.779 35 H 0.156 0.844 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.715 4.761 22.626 23.418 hybrid contribution -0.818 1.162 -2.053 2.497 sum -4.533 5.923 20.573 21.883 Atomic orbital electron populations 1.21736 0.95266 1.01070 1.00175 1.20828 0.95462 0.95817 0.94705 1.21738 1.00421 0.95913 1.00171 1.19101 0.96303 0.95215 0.89573 1.21170 1.31198 1.12025 0.90503 0.92289 1.25019 0.95342 0.95084 0.99114 1.69965 1.36963 1.22996 1.23459 0.86637 0.79173 0.79407 0.83024 1.20767 1.21325 1.19962 1.21450 0.98023 0.95650 0.83252 1.45672 1.58245 1.33885 1.03480 1.18790 0.87748 0.87846 0.79267 1.69573 1.27863 1.13919 1.37514 1.43721 1.58439 1.32715 1.02961 1.20978 0.99554 0.97097 0.79106 1.21404 1.00876 0.99487 0.92325 1.22172 0.99481 1.03970 0.90987 1.23065 0.97385 0.97743 1.03563 1.22983 1.04118 0.95367 0.99431 0.95219 0.91544 0.93485 0.93484 0.91549 0.95218 0.96393 0.96385 0.93030 0.92710 0.92711 0.77882 0.84383 0.76894 0.91976 0.91896 0.91415 0.91146 0.87360 0.88772 0.88841 0.88837 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.14 2.39 3.91 -4.04 -0.02 2.37 16 14 N -0.77 -11.05 5.07 -61.79 -0.31 -11.37 16 15 C 0.63 9.32 8.71 -320.09 -2.79 6.53 16 16 N -0.84 -14.15 13.21 30.15 0.40 -13.76 16 17 N -0.73 -8.31 5.67 -61.79 -0.35 -8.66 16 18 C 0.16 1.62 5.62 -4.04 -0.02 1.60 16 19 C -0.10 -0.77 5.61 -26.73 -0.15 -0.92 16 20 C -0.15 -1.06 5.73 -90.61 -0.52 -1.58 16 21 C -0.18 -1.21 10.18 -26.69 -0.27 -1.48 16 22 C -0.18 -1.16 10.26 -26.69 -0.27 -1.43 16 23 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 24 H 0.07 1.27 6.62 -51.92 -0.34 0.92 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.26 6.62 -51.92 -0.34 0.92 16 28 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.05 0.98 7.97 -51.93 -0.41 0.56 16 33 H 0.05 0.98 7.97 -51.93 -0.41 0.56 16 34 H 0.39 4.99 6.26 -40.82 -0.26 4.73 16 35 H 0.34 5.90 7.14 -40.82 -0.29 5.61 16 36 H 0.40 3.53 8.57 -40.82 -0.35 3.18 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.79 8.08 -51.93 -0.42 0.38 16 42 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -29.48 356.17 -11.21 -40.70 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.03 Total: 8.77 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -4.00 Total: -11.65 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.47 Total: -59.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.48 -11.21 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864468766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.344 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds