Wall clock time and date at job start Mon Mar 30 2020 08:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47480 * 2 1 4 4 C 1.53000 * 109.47517 * 239.99671 * 2 1 3 5 5 C 1.50707 * 109.47039 * 59.99935 * 4 2 1 6 6 H 1.08002 * 119.99792 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00274 * 180.02562 * 5 4 2 8 8 N 1.31525 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00396 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47505 * 89.99695 * 9 7 5 11 11 H 1.48496 * 109.47375 * 210.00414 * 9 7 5 12 12 H 1.48507 * 109.46816 * 329.99935 * 9 7 5 13 13 C 1.53004 * 109.47090 * 120.00012 * 2 1 3 14 14 N 1.46507 * 109.46773 * 299.99965 * 13 2 1 15 15 C 1.37485 * 119.99630 * 179.97438 * 14 13 2 16 16 N 1.30340 * 119.99900 * 0.02562 * 15 14 13 17 17 N 1.37485 * 119.99488 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99597 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46691 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46626 * 179.97438 * 19 18 17 21 21 C 1.53003 * 117.49663 * 243.74292 * 20 19 18 22 22 C 1.53002 * 117.49643 * 175.08260 * 20 19 18 23 23 H 1.08991 * 109.47593 * 300.00328 * 1 2 3 24 24 H 1.09008 * 109.46837 * 60.00066 * 1 2 3 25 25 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47728 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47031 * 299.99815 * 3 2 1 28 28 H 1.09005 * 109.47339 * 59.99734 * 3 2 1 29 29 H 1.08997 * 109.47627 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47327 * 300.00424 * 4 2 1 31 31 H 0.96998 * 119.99859 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47266 * 180.02562 * 13 2 1 33 33 H 1.08997 * 109.46955 * 59.99581 * 13 2 1 34 34 H 0.96999 * 120.00184 * 0.02562 * 14 13 2 35 35 H 0.96991 * 120.00594 * 0.02562 * 16 15 14 36 36 H 0.96999 * 120.00327 * 359.97438 * 17 15 14 37 37 H 1.08993 * 109.47068 * 59.99613 * 18 17 15 38 38 H 1.09000 * 109.46872 * 299.99824 * 18 17 15 39 39 H 1.08993 * 109.47839 * 59.99891 * 19 18 17 40 40 H 1.09000 * 109.47160 * 299.99453 * 19 18 17 41 41 H 1.09002 * 115.55153 * 29.41498 * 20 19 18 42 42 H 1.08998 * 117.49856 * 0.02562 * 21 20 19 43 43 H 1.09000 * 117.49861 * 145.02337 * 21 20 19 44 44 H 1.08993 * 117.50251 * 214.97577 * 22 20 19 45 45 H 1.09003 * 117.49715 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8704 -0.4823 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2484 0.3986 -5.2572 10 1 2.2272 1.4396 -5.6615 11 1 1.0825 -0.5805 -6.3613 12 1 -0.0594 1.0371 -4.9613 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8833 -0.5006 3.6941 16 7 2.6326 -1.5603 3.8137 17 7 1.4245 0.1473 4.8166 18 6 1.7784 -0.3532 6.1473 19 6 1.1441 0.5416 7.2140 20 6 1.5132 0.0185 8.6036 21 6 0.3749 -0.4812 9.4956 22 6 1.0687 0.8464 9.8111 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7490 -1.2492 31 1 2.8610 -1.8830 -4.7335 32 1 3.1299 -0.7209 1.2495 33 1 1.6765 -1.7489 1.2493 34 1 0.9936 0.7579 2.3564 35 1 2.9565 -2.0172 3.0218 36 1 0.8671 0.9362 4.7276 37 1 2.8622 -0.3442 6.2624 38 1 1.4093 -1.3724 6.2621 39 1 0.0603 0.5322 7.0987 40 1 1.5128 1.5609 7.0993 41 1 2.4705 -0.4981 8.6726 42 1 -0.6367 -0.4377 9.0923 43 1 0.5835 -1.3264 10.1517 44 1 1.7333 0.8741 10.6745 45 1 0.5129 1.7634 9.6154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864468766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:23 Heat of formation + Delta-G solvation = 12.547314 kcal Electronic energy + Delta-G solvation = -20066.634598 eV Core-core repulsion = 17118.600856 eV Total energy + Delta-G solvation = -2948.033742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10972 -38.80932 -37.87261 -35.37457 -34.26696 -31.90298 -30.67553 -28.97374 -27.97232 -27.42853 -25.03449 -23.88676 -23.14686 -21.71167 -20.89788 -19.91436 -18.66947 -18.37375 -17.10923 -16.59183 -16.46343 -16.08760 -15.65291 -15.54499 -15.33251 -14.72429 -14.55292 -14.38055 -14.20616 -13.94604 -13.48230 -12.91907 -12.77300 -12.73497 -12.63797 -12.35206 -12.33540 -12.22989 -12.22698 -12.07593 -11.98334 -11.49576 -11.11444 -11.00181 -10.86673 -10.73638 -10.51533 -10.30952 -9.53519 -8.93965 -8.14592 -6.22014 1.42064 1.42302 1.52573 1.89893 2.23034 2.43769 2.95301 3.19654 3.19869 3.80797 3.94963 4.02446 4.07305 4.09023 4.22351 4.31901 4.46177 4.64818 4.68704 4.70831 4.71410 4.75633 4.85054 4.87023 4.95827 5.10415 5.11024 5.11187 5.17800 5.23614 5.32144 5.41337 5.44091 5.48928 5.50782 5.53843 5.66351 5.79687 5.89529 6.16461 6.31717 6.51743 6.92806 7.20533 7.45576 7.92565 8.97715 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.056478 B = 0.002679 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.650438 B =10447.852846 C =10663.501965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.119 4.119 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.070 0.930 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.156 3.844 14 N -0.756 5.756 15 C 0.630 3.370 16 N -0.865 5.865 17 N -0.720 5.720 18 C 0.161 3.839 19 C -0.090 4.090 20 C -0.160 4.160 21 C -0.185 4.185 22 C -0.175 4.175 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.066 0.934 29 H -0.013 1.013 30 H -0.013 1.013 31 H 0.259 0.741 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.399 0.601 35 H 0.332 0.668 36 H 0.412 0.588 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 7.894 23.229 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.060 4.060 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.088 0.912 7 C -0.203 4.203 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.185 1.185 13 C 0.030 3.970 14 N -0.403 5.403 15 C 0.263 3.737 16 N -0.516 5.516 17 N -0.365 5.365 18 C 0.037 3.963 19 C -0.127 4.127 20 C -0.178 4.178 21 C -0.222 4.222 22 C -0.212 4.212 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.235 0.765 35 H 0.147 0.853 36 H 0.249 0.751 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.358 7.096 23.964 25.561 hybrid contribution -0.299 0.422 -2.389 2.445 sum -5.656 7.518 21.575 23.537 Atomic orbital electron populations 1.21661 0.93847 1.00792 1.01338 1.20626 0.96460 0.96159 0.92794 1.21665 0.99780 0.94850 1.01360 1.18979 0.94333 0.94230 0.92250 1.21578 1.30404 1.11991 0.91144 0.91150 1.25940 0.95744 0.95891 1.02688 1.70116 1.38753 1.24880 1.24074 0.85552 0.79132 0.78129 0.78866 1.20187 1.21553 1.18469 1.21048 0.97218 0.95061 0.83624 1.45362 1.58287 1.34004 1.02602 1.18976 0.87188 0.87506 0.80043 1.69598 1.29510 1.15305 1.37222 1.43758 1.57815 1.32690 1.02246 1.20969 0.98924 0.97114 0.79331 1.21288 1.01083 0.99127 0.91227 1.22175 0.99566 1.04855 0.91245 1.23139 0.97346 0.98219 1.03470 1.23057 1.03819 0.95414 0.98929 0.91479 0.92846 0.94533 0.94527 0.92805 0.91479 0.99431 0.99425 0.93179 0.93904 0.93917 0.76465 0.85283 0.75102 0.93373 0.93489 0.90512 0.90150 0.87935 0.88452 0.88639 0.88263 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.21 0.54 -52.18 -0.03 -2.24 16 3 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -27.31 7.65 25.60 0.20 -27.12 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 C 0.16 5.25 3.91 86.38 0.34 5.59 16 14 N -0.76 -20.24 5.07 -349.39 -1.77 -22.02 16 15 C 0.63 17.68 8.71 260.54 2.27 19.95 16 16 N -0.87 -29.06 13.21 -58.53 -0.77 -29.83 16 17 N -0.72 -14.69 5.67 -349.41 -1.98 -16.67 16 18 C 0.16 3.10 5.62 86.38 0.49 3.58 16 19 C -0.09 -1.13 5.61 30.60 0.17 -0.96 16 20 C -0.16 -2.05 5.73 -10.79 -0.06 -2.11 16 21 C -0.18 -2.17 10.18 30.62 0.31 -1.85 16 22 C -0.18 -1.86 10.26 30.62 0.31 -1.54 16 23 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 24 H 0.05 1.93 6.62 -2.38 -0.02 1.92 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.94 6.62 -2.38 -0.02 1.92 16 28 H 0.07 1.73 6.86 -2.38 -0.02 1.72 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.04 1.55 7.97 -2.39 -0.02 1.54 16 33 H 0.04 1.55 7.97 -2.39 -0.02 1.53 16 34 H 0.40 8.82 6.26 -92.71 -0.58 8.23 16 35 H 0.33 11.75 7.14 -92.71 -0.66 11.09 16 36 H 0.41 5.93 8.57 -92.71 -0.79 5.13 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 0.86 7.87 -2.39 -0.02 0.84 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 42 H 0.10 1.07 8.03 -2.39 -0.02 1.05 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.82 356.17 2.47 -62.35 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -1.06 Total: 28.26 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.74 Total: -11.28 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -4.24 Total: -124.82 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.82 2.47 -62.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864468766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.900 kcal (2) G-P(sol) polarization free energy of solvation -64.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds