Wall clock time and date at job start Mon Mar 30 2020 07:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 H 1.09003 * 109.46923 * 28.47598 * 3 2 1 5 5 C 1.50709 * 109.47090 * 148.47146 * 3 2 1 6 6 H 1.07994 * 120.00177 * 120.00551 * 5 3 2 7 7 C 1.37880 * 119.99570 * 300.00232 * 5 3 2 8 8 N 1.31510 * 120.00475 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99578 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47261 * 120.00106 * 9 7 5 12 12 H 1.48502 * 109.46779 * 240.00172 * 9 7 5 13 13 N 1.46895 * 109.47530 * 268.47029 * 3 2 1 14 14 C 1.46904 * 110.99699 * 86.75655 * 13 3 2 15 15 H 1.09001 * 109.47187 * 299.96190 * 14 13 3 16 16 C 1.53001 * 109.47283 * 59.96584 * 14 13 3 17 17 C 1.52995 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47024 * 300.00003 * 17 16 14 19 19 C 1.53001 * 109.47224 * 60.00122 * 18 17 16 20 20 C 1.52995 * 109.47021 * 299.99880 * 19 18 17 21 21 H 1.09001 * 109.47292 * 300.00298 * 20 19 18 22 22 C 1.53001 * 109.47021 * 179.97438 * 20 19 18 23 23 C 1.53000 * 109.47166 * 293.42659 * 22 20 19 24 24 C 1.53001 * 109.47187 * 53.42532 * 22 20 19 25 25 C 1.53000 * 109.47239 * 173.42909 * 22 20 19 26 26 H 1.08997 * 109.46906 * 187.58022 * 1 2 3 27 27 H 1.08996 * 109.46960 * 307.58271 * 1 2 3 28 28 H 1.09002 * 109.47214 * 67.58004 * 1 2 3 29 29 H 1.09000 * 109.47359 * 240.00252 * 2 1 3 30 30 H 1.08998 * 109.47225 * 120.00474 * 2 1 3 31 31 H 0.97001 * 120.00313 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00289 * 210.70640 * 13 3 2 33 33 H 1.08998 * 109.46795 * 300.00010 * 16 14 13 34 34 H 1.09002 * 109.46925 * 60.00047 * 16 14 13 35 35 H 1.08996 * 109.47412 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.47292 * 59.99702 * 17 16 14 37 37 H 1.08999 * 109.47027 * 299.99477 * 18 17 16 38 38 H 1.09001 * 109.46822 * 179.97438 * 18 17 16 39 39 H 1.08994 * 109.47156 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46925 * 59.99802 * 19 18 17 41 41 H 1.09001 * 109.47062 * 60.39366 * 23 22 20 42 42 H 1.08997 * 109.47601 * 180.39682 * 23 22 20 43 43 H 1.09004 * 109.47003 * 300.39860 * 23 22 20 44 44 H 1.09003 * 109.46636 * 60.00249 * 24 22 20 45 45 H 1.08996 * 109.46706 * 179.97438 * 24 22 20 46 46 H 1.08995 * 109.46918 * 299.99947 * 24 22 20 47 47 H 1.09007 * 109.47030 * 68.46205 * 25 22 20 48 48 H 1.08993 * 109.47374 * 188.46829 * 25 22 20 49 49 H 1.09007 * 109.46743 * 308.46624 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3094 2.0861 0.4900 5 6 3.3493 1.5124 0.7430 6 1 4.2394 1.8563 0.2374 7 6 3.4106 1.1373 2.0684 8 7 2.3268 0.7181 2.6841 9 14 5.0334 1.2246 2.9896 10 1 6.0937 1.7247 2.0781 11 1 4.8976 2.1473 4.1452 12 1 5.3990 -0.1294 3.4776 13 7 2.2381 1.8919 -1.3844 14 6 0.9948 2.4400 -1.9429 15 1 0.2220 1.6714 -1.9328 16 6 0.5391 3.6326 -1.0997 17 6 -0.7554 4.2038 -1.6818 18 6 -0.5091 4.6611 -3.1210 19 6 -0.0535 3.4685 -3.9642 20 6 1.2410 2.8973 -3.3821 21 1 2.0140 3.6658 -3.3919 22 6 1.6964 1.7044 -4.2250 23 6 0.6886 0.5624 -4.0789 24 6 1.7844 2.1219 -5.6943 25 6 3.0713 1.2357 -3.7446 26 1 -0.3633 -1.0187 0.1356 27 1 -0.3633 0.6268 0.8144 28 1 -0.3634 0.3919 -0.9500 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.3699 0.4546 3.6166 32 1 2.9879 2.5646 -1.4425 33 1 0.3642 3.3068 -0.0744 34 1 1.3119 4.4012 -1.1100 35 1 -1.0798 5.0537 -1.0814 36 1 -1.5283 3.4353 -1.6720 37 1 0.2637 5.4296 -3.1308 38 1 -1.4315 5.0676 -3.5358 39 1 0.1215 3.7942 -4.9895 40 1 -0.8264 2.7001 -3.9543 41 1 -0.2894 0.8941 -4.4276 42 1 1.0166 -0.2900 -4.6737 43 1 0.6206 0.2697 -3.0311 44 1 2.5024 2.9355 -5.7983 45 1 2.1093 1.2721 -6.2946 46 1 0.8049 2.4557 -6.0364 47 1 2.9793 0.7988 -2.7502 48 1 3.4621 0.4884 -4.4351 49 1 3.7521 2.0862 -3.7063 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054181971.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:48 Heat of formation + Delta-G solvation = -30.158121 kcal Electronic energy + Delta-G solvation = -23137.078894 eV Core-core repulsion = 20290.733650 eV Total energy + Delta-G solvation = -2846.345245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.74806 -35.87530 -35.13812 -32.43948 -30.87570 -29.42508 -28.32735 -26.93698 -26.71751 -25.58387 -22.76322 -22.41777 -21.17583 -19.77823 -19.17398 -18.09385 -16.43678 -15.25065 -15.06052 -14.44794 -14.23192 -14.00252 -13.72717 -13.36379 -13.11632 -12.84308 -12.67706 -12.38816 -12.23723 -11.99912 -11.85674 -11.51160 -11.39137 -11.10934 -11.09167 -10.95973 -10.83881 -10.76732 -10.63188 -10.60305 -10.31584 -10.24316 -10.04133 -9.84148 -9.72571 -9.65476 -9.52666 -9.04305 -8.72822 -8.32468 -6.92700 -5.99510 -4.05057 3.29402 3.38028 3.41673 4.42733 4.93712 5.00183 5.05503 5.31585 5.32501 5.40361 5.44427 5.55932 5.71445 5.75938 5.83820 5.90170 5.95201 5.97120 5.99693 6.05092 6.16724 6.19964 6.25873 6.32541 6.35745 6.40538 6.42991 6.49962 6.53031 6.55550 6.61612 6.63425 6.70547 6.74355 6.84045 6.89924 7.00877 7.14293 7.28379 7.42372 7.54622 7.63022 7.83783 8.00723 8.35111 8.46222 8.74236 9.08364 9.60176 11.06062 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.006309 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.167421 B = 4436.766376 C = 4771.690151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C 0.207 3.793 4 H 0.015 0.985 5 C -0.516 4.516 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.670 5.670 14 C 0.089 3.911 15 H 0.083 0.917 16 C -0.155 4.155 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.067 4.067 21 H 0.060 0.940 22 C -0.048 4.048 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.158 4.158 26 H 0.027 0.973 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.258 0.742 32 H 0.328 0.672 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.050 0.950 47 H 0.123 0.877 48 H 0.026 0.974 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 3.977 -12.118 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 C 0.100 3.900 4 H 0.032 0.968 5 C -0.555 4.555 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.524 5.524 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.298 5.298 14 C -0.021 4.021 15 H 0.101 0.899 16 C -0.194 4.194 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.086 4.086 21 H 0.079 0.921 22 C -0.048 4.048 23 C -0.199 4.199 24 C -0.201 4.201 25 C -0.215 4.215 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.140 0.860 48 H 0.045 0.955 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.149 3.266 -12.192 13.631 hybrid contribution 0.761 0.964 1.061 1.623 sum -4.388 4.230 -11.131 12.690 Atomic orbital electron populations 1.21880 0.99489 0.99030 0.99397 1.21508 0.91864 0.99631 1.00802 1.19318 0.95887 0.92203 0.82589 0.96763 1.21377 0.95088 1.43750 0.95288 0.92431 1.24892 0.96161 0.95344 0.97575 1.69971 1.27222 1.44201 1.11001 0.86581 0.84273 0.77576 0.79783 1.19860 1.21279 1.21119 1.61245 1.04731 1.40832 1.23029 1.21744 0.94391 0.94178 0.91814 0.89932 1.22347 0.96751 0.98977 1.01320 1.21476 0.98302 0.99934 0.95536 1.21540 1.00254 0.97920 0.95801 1.21685 0.97856 0.97370 0.98433 1.21202 0.96176 0.96363 0.94870 0.92121 1.20306 0.96697 0.94676 0.93139 1.21958 0.97688 0.97464 1.02765 1.22007 1.00784 1.00533 0.96794 1.22418 0.93814 1.00050 1.05223 0.95390 0.93533 0.94798 0.94683 0.90059 0.93166 0.85438 0.90791 0.92821 0.92958 0.92442 0.92498 0.92893 0.92218 0.92044 0.93860 0.93839 0.91058 0.93402 0.93490 0.93130 0.85960 0.95538 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.59 37.16 0.36 -2.53 16 2 C -0.10 -2.30 5.43 -26.73 -0.15 -2.44 16 3 C 0.21 4.82 1.99 -68.86 -0.14 4.68 16 4 H 0.01 0.38 4.98 -51.93 -0.26 0.12 16 5 C -0.52 -13.53 8.57 -34.43 -0.30 -13.82 16 6 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 7 C 0.06 1.67 5.07 -17.82 -0.09 1.58 16 8 N -0.89 -24.61 11.57 55.43 0.64 -23.97 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.67 -12.86 2.38 -100.94 -0.24 -13.10 16 14 C 0.09 1.47 1.34 -67.71 -0.09 1.38 16 15 H 0.08 1.45 3.71 -51.93 -0.19 1.26 16 16 C -0.15 -2.59 5.06 -26.73 -0.14 -2.72 16 17 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 18 C -0.12 -1.45 5.92 -26.73 -0.16 -1.60 16 19 C -0.12 -1.44 4.45 -26.73 -0.12 -1.56 16 20 C -0.07 -0.95 1.35 -90.62 -0.12 -1.08 16 21 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 22 C -0.05 -0.67 0.58 -154.51 -0.09 -0.76 16 23 C -0.14 -2.00 7.71 37.16 0.29 -1.71 16 24 C -0.14 -1.75 7.93 37.16 0.29 -1.46 16 25 C -0.16 -2.46 7.42 37.16 0.28 -2.19 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 28 H 0.03 0.63 5.45 -51.93 -0.28 0.34 16 29 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 30 H 0.08 2.15 5.96 -51.93 -0.31 1.84 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.33 6.47 7.95 -39.29 -0.31 6.16 16 33 H 0.07 1.45 5.98 -51.93 -0.31 1.14 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.68 6.33 -51.93 -0.33 0.36 16 40 H 0.06 0.78 6.63 -51.93 -0.34 0.43 16 41 H 0.04 0.56 6.64 -51.93 -0.34 0.21 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.15 6.02 -51.93 -0.31 0.84 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.57 6.33 -51.93 -0.33 0.24 16 47 H 0.12 2.23 5.40 -51.93 -0.28 1.95 16 48 H 0.03 0.39 8.13 -51.93 -0.42 -0.03 16 49 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -25.57 343.97 -8.80 -34.37 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -9.04 Total: 7.53 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -0.33 Total: -25.99 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.40 Total: -37.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -25.57 -8.80 -34.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054181971.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.213 kcal (2) G-P(sol) polarization free energy of solvation -25.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds