Wall clock time and date at job start Mon Mar 30 2020 07:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 H 1.09003 * 109.46923 * 28.47598 * 3 2 1 5 5 C 1.50709 * 109.47090 * 148.47146 * 3 2 1 6 6 H 1.07994 * 120.00177 * 120.00551 * 5 3 2 7 7 C 1.37880 * 119.99570 * 300.00232 * 5 3 2 8 8 N 1.31510 * 120.00475 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99578 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47261 * 120.00106 * 9 7 5 12 12 H 1.48502 * 109.46779 * 240.00172 * 9 7 5 13 13 N 1.46895 * 109.47530 * 268.47029 * 3 2 1 14 14 C 1.46904 * 110.99699 * 86.75655 * 13 3 2 15 15 H 1.09001 * 109.47187 * 299.96190 * 14 13 3 16 16 C 1.53001 * 109.47283 * 59.96584 * 14 13 3 17 17 C 1.52995 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47024 * 300.00003 * 17 16 14 19 19 C 1.53001 * 109.47224 * 60.00122 * 18 17 16 20 20 C 1.52995 * 109.47021 * 299.99880 * 19 18 17 21 21 H 1.09001 * 109.47292 * 300.00298 * 20 19 18 22 22 C 1.53001 * 109.47021 * 179.97438 * 20 19 18 23 23 C 1.53000 * 109.47166 * 293.42659 * 22 20 19 24 24 C 1.53001 * 109.47187 * 53.42532 * 22 20 19 25 25 C 1.53000 * 109.47239 * 173.42909 * 22 20 19 26 26 H 1.08997 * 109.46906 * 187.58022 * 1 2 3 27 27 H 1.08996 * 109.46960 * 307.58271 * 1 2 3 28 28 H 1.09002 * 109.47214 * 67.58004 * 1 2 3 29 29 H 1.09000 * 109.47359 * 240.00252 * 2 1 3 30 30 H 1.08998 * 109.47225 * 120.00474 * 2 1 3 31 31 H 0.97001 * 120.00313 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00289 * 210.70640 * 13 3 2 33 33 H 1.08998 * 109.46795 * 300.00010 * 16 14 13 34 34 H 1.09002 * 109.46925 * 60.00047 * 16 14 13 35 35 H 1.08996 * 109.47412 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.47292 * 59.99702 * 17 16 14 37 37 H 1.08999 * 109.47027 * 299.99477 * 18 17 16 38 38 H 1.09001 * 109.46822 * 179.97438 * 18 17 16 39 39 H 1.08994 * 109.47156 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46925 * 59.99802 * 19 18 17 41 41 H 1.09001 * 109.47062 * 60.39366 * 23 22 20 42 42 H 1.08997 * 109.47601 * 180.39682 * 23 22 20 43 43 H 1.09004 * 109.47003 * 300.39860 * 23 22 20 44 44 H 1.09003 * 109.46636 * 60.00249 * 24 22 20 45 45 H 1.08996 * 109.46706 * 179.97438 * 24 22 20 46 46 H 1.08995 * 109.46918 * 299.99947 * 24 22 20 47 47 H 1.09007 * 109.47030 * 68.46205 * 25 22 20 48 48 H 1.08993 * 109.47374 * 188.46829 * 25 22 20 49 49 H 1.09007 * 109.46743 * 308.46624 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3094 2.0861 0.4900 5 6 3.3493 1.5124 0.7430 6 1 4.2394 1.8563 0.2374 7 6 3.4106 1.1373 2.0684 8 7 2.3268 0.7181 2.6841 9 14 5.0334 1.2246 2.9896 10 1 6.0937 1.7247 2.0781 11 1 4.8976 2.1473 4.1452 12 1 5.3990 -0.1294 3.4776 13 7 2.2381 1.8919 -1.3844 14 6 0.9948 2.4400 -1.9429 15 1 0.2220 1.6714 -1.9328 16 6 0.5391 3.6326 -1.0997 17 6 -0.7554 4.2038 -1.6818 18 6 -0.5091 4.6611 -3.1210 19 6 -0.0535 3.4685 -3.9642 20 6 1.2410 2.8973 -3.3821 21 1 2.0140 3.6658 -3.3919 22 6 1.6964 1.7044 -4.2250 23 6 0.6886 0.5624 -4.0789 24 6 1.7844 2.1219 -5.6943 25 6 3.0713 1.2357 -3.7446 26 1 -0.3633 -1.0187 0.1356 27 1 -0.3633 0.6268 0.8144 28 1 -0.3634 0.3919 -0.9500 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.3699 0.4546 3.6166 32 1 2.9879 2.5646 -1.4425 33 1 0.3642 3.3068 -0.0744 34 1 1.3119 4.4012 -1.1100 35 1 -1.0798 5.0537 -1.0814 36 1 -1.5283 3.4353 -1.6720 37 1 0.2637 5.4296 -3.1308 38 1 -1.4315 5.0676 -3.5358 39 1 0.1215 3.7942 -4.9895 40 1 -0.8264 2.7001 -3.9543 41 1 -0.2894 0.8941 -4.4276 42 1 1.0166 -0.2900 -4.6737 43 1 0.6206 0.2697 -3.0311 44 1 2.5024 2.9355 -5.7983 45 1 2.1093 1.2721 -6.2946 46 1 0.8049 2.4557 -6.0364 47 1 2.9793 0.7988 -2.7502 48 1 3.4621 0.4884 -4.4351 49 1 3.7521 2.0862 -3.7063 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054181971.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:47 Heat of formation + Delta-G solvation = -41.078548 kcal Electronic energy + Delta-G solvation = -23137.552440 eV Core-core repulsion = 20290.733650 eV Total energy + Delta-G solvation = -2846.818790 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00756 -37.47402 -36.37020 -34.26621 -32.61962 -30.61849 -29.85387 -28.01105 -27.99045 -27.25790 -24.57528 -23.62162 -22.54306 -21.17744 -20.72828 -19.39561 -18.27232 -16.89310 -16.50491 -15.98326 -15.60838 -15.31524 -14.89876 -14.69141 -14.44126 -14.36616 -13.97536 -13.86974 -13.73528 -13.62318 -13.23414 -12.92328 -12.74391 -12.65796 -12.56940 -12.51645 -12.28444 -12.19949 -12.04964 -11.89657 -11.76544 -11.52951 -11.48285 -11.47352 -11.21575 -10.95800 -10.75804 -10.69593 -10.49196 -10.31642 -8.53251 -8.06699 -6.17923 1.39144 1.42398 1.52281 2.44009 3.22040 3.71697 3.79589 3.92659 4.18280 4.22971 4.29509 4.34749 4.55319 4.57021 4.60254 4.67332 4.68959 4.76352 4.80985 4.84848 4.89350 4.96550 4.97653 5.07579 5.12669 5.15149 5.22485 5.25829 5.29509 5.30173 5.34510 5.37908 5.40824 5.45142 5.47378 5.53679 5.63164 5.65741 5.69708 5.74913 5.78419 5.86096 6.05318 6.22766 6.39646 6.63798 6.95975 7.15152 7.51262 8.97918 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.006309 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.167421 B = 4436.766376 C = 4771.690151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C 0.216 3.784 4 H -0.011 1.011 5 C -0.531 4.531 6 H 0.052 0.948 7 C 0.016 3.984 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.660 5.660 14 C 0.093 3.907 15 H 0.076 0.924 16 C -0.151 4.151 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.060 4.060 21 H 0.055 0.945 22 C -0.047 4.047 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.154 4.154 26 H 0.041 0.959 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.258 0.742 32 H 0.324 0.676 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.031 0.969 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 4.726 -14.378 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.130 4.130 3 C 0.108 3.892 4 H 0.006 0.994 5 C -0.570 4.570 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.288 5.288 14 C -0.017 4.017 15 H 0.093 0.907 16 C -0.190 4.190 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.079 4.079 21 H 0.073 0.927 22 C -0.047 4.047 23 C -0.195 4.195 24 C -0.196 4.196 25 C -0.212 4.212 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.113 0.887 48 H 0.050 0.950 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.703 4.020 -14.467 16.062 hybrid contribution 0.946 0.727 1.762 2.128 sum -4.757 4.747 -12.705 14.373 Atomic orbital electron populations 1.21719 0.97456 0.99627 0.99686 1.21328 0.93658 0.99030 0.99005 1.19059 0.93915 0.91953 0.84259 0.99389 1.21734 0.96077 1.43314 0.95841 0.92932 1.25584 0.98996 0.95266 0.98491 1.70091 1.28875 1.45011 1.11091 0.85652 0.80865 0.77416 0.78510 1.19377 1.21090 1.20963 1.61240 1.05967 1.41188 1.20384 1.21771 0.92775 0.93756 0.93396 0.90658 1.22253 0.98349 0.98875 0.99509 1.21451 0.96384 1.00057 0.96984 1.21519 1.01460 0.97855 0.94200 1.21676 0.96486 0.97414 0.99332 1.21137 0.97387 0.96407 0.92985 0.92660 1.20290 0.95433 0.94435 0.94538 1.21910 0.98613 0.97726 1.01284 1.21939 1.01853 1.00855 0.94909 1.22311 0.95167 0.99901 1.03790 0.93957 0.95474 0.92800 0.94482 0.93579 0.93306 0.85899 0.94459 0.93571 0.92356 0.92328 0.92396 0.90559 0.90140 0.91717 0.92233 0.93339 0.93522 0.93115 0.93026 0.91548 0.88722 0.95013 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 9.59 71.98 0.69 -4.62 16 2 C -0.09 -4.36 5.43 30.59 0.17 -4.20 16 3 C 0.22 10.45 1.99 44.17 0.09 10.53 16 4 H -0.01 -0.60 4.98 -2.39 -0.01 -0.61 16 5 C -0.53 -28.69 8.57 25.60 0.22 -28.47 16 6 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 7 C 0.02 0.87 5.07 84.66 0.43 1.30 16 8 N -0.91 -52.27 11.57 21.45 0.25 -52.02 16 9 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 N -0.66 -25.96 2.38 -473.28 -1.13 -27.08 16 14 C 0.09 3.06 1.34 44.92 0.06 3.12 16 15 H 0.08 2.62 3.71 -2.39 -0.01 2.61 16 16 C -0.15 -5.10 5.06 30.59 0.15 -4.94 16 17 C -0.11 -2.92 5.92 30.59 0.18 -2.74 16 18 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 19 C -0.11 -2.39 4.45 30.59 0.14 -2.26 16 20 C -0.06 -1.60 1.35 -10.79 -0.01 -1.62 16 21 H 0.05 1.55 8.11 -2.39 -0.02 1.53 16 22 C -0.05 -1.21 0.58 -52.18 -0.03 -1.24 16 23 C -0.14 -3.61 7.71 71.98 0.56 -3.06 16 24 C -0.14 -2.90 7.93 71.98 0.57 -2.33 16 25 C -0.15 -4.69 7.42 71.98 0.53 -4.15 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.03 1.20 7.93 -2.39 -0.02 1.18 16 28 H 0.05 2.00 5.45 -2.39 -0.01 1.98 16 29 H 0.04 1.71 8.02 -2.39 -0.02 1.69 16 30 H 0.05 2.53 5.96 -2.39 -0.01 2.51 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.32 13.13 7.95 -89.69 -0.71 12.41 16 33 H 0.04 1.53 5.98 -2.39 -0.01 1.51 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.46 6.33 -2.39 -0.02 1.45 16 40 H 0.06 1.39 6.63 -2.39 -0.02 1.37 16 41 H 0.06 1.35 6.64 -2.39 -0.02 1.33 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.05 1.45 6.02 -2.38 -0.01 1.43 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.19 6.33 -2.39 -0.02 1.18 16 47 H 0.09 3.46 5.40 -2.38 -0.01 3.45 16 48 H 0.03 0.90 8.13 -2.39 -0.02 0.88 16 49 H 0.03 1.04 8.10 -2.38 -0.02 1.02 16 Total: -1.00 -56.32 343.97 5.26 -51.06 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.19 Total: 28.98 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 3.92 Total: -46.90 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -0.88 Total: -79.10 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -56.32 5.26 -51.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054181971.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.982 kcal (2) G-P(sol) polarization free energy of solvation -56.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds