Wall clock time and date at job start Mon Mar 30 2020 07:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47378 * 2 1 4 4 H 1.08998 * 109.47227 * 303.93217 * 3 2 1 5 5 C 1.50701 * 109.47403 * 183.92409 * 3 2 1 6 6 H 1.07994 * 120.00116 * 240.00846 * 5 3 2 7 7 C 1.37875 * 119.99515 * 60.00395 * 5 3 2 8 8 N 1.31519 * 120.00326 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00109 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46652 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47575 * 119.99913 * 9 7 5 12 12 H 1.48499 * 109.47130 * 240.00397 * 9 7 5 13 13 N 1.46903 * 109.46598 * 63.93121 * 3 2 1 14 14 C 1.46901 * 110.99523 * 202.59877 * 13 3 2 15 15 H 1.08993 * 109.47271 * 317.56411 * 14 13 3 16 16 C 1.52997 * 109.47286 * 77.56980 * 14 13 3 17 17 C 1.53007 * 109.47107 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46985 * 300.00249 * 17 16 14 19 19 C 1.52994 * 109.47709 * 59.99746 * 18 17 16 20 20 C 1.53006 * 109.46628 * 197.56853 * 14 13 3 21 21 H 1.09001 * 109.47142 * 299.99613 * 20 14 13 22 22 C 1.52997 * 109.47183 * 60.00064 * 20 14 13 23 23 C 1.52996 * 109.47321 * 53.40214 * 22 20 14 24 24 C 1.53005 * 109.46994 * 173.40054 * 22 20 14 25 25 C 1.53003 * 109.46996 * 293.39667 * 22 20 14 26 26 H 1.09003 * 109.47153 * 63.51243 * 1 2 3 27 27 H 1.08997 * 109.47081 * 183.51791 * 1 2 3 28 28 H 1.08999 * 109.46909 * 303.52033 * 1 2 3 29 29 H 1.09004 * 109.47476 * 240.00497 * 2 1 3 30 30 H 1.08996 * 109.47633 * 120.00455 * 2 1 3 31 31 H 0.96994 * 120.00076 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00234 * 326.54461 * 13 3 2 33 33 H 1.09001 * 109.47450 * 59.99795 * 16 14 13 34 34 H 1.08992 * 109.47058 * 299.99406 * 16 14 13 35 35 H 1.08994 * 109.47432 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46908 * 59.99739 * 17 16 14 37 37 H 1.09006 * 109.46885 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46881 * 299.99506 * 18 17 16 39 39 H 1.09001 * 109.47145 * 59.99921 * 19 18 17 40 40 H 1.08992 * 109.47365 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47275 * 59.99900 * 23 22 20 42 42 H 1.09003 * 109.46983 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.46656 * 299.99813 * 23 22 20 44 44 H 1.09006 * 109.47083 * 59.99846 * 24 22 20 45 45 H 1.08994 * 109.46881 * 179.97438 * 24 22 20 46 46 H 1.09001 * 109.47159 * 299.99829 * 24 22 20 47 47 H 1.08999 * 109.46500 * 74.47746 * 25 22 20 48 48 H 1.09000 * 109.46971 * 194.47701 * 25 22 20 49 49 H 1.09003 * 109.47276 * 314.48241 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6204 1.9763 -0.8526 5 6 3.5440 1.4436 -0.0972 6 1 4.1354 1.8929 0.6867 7 6 4.1646 0.8709 -1.1871 8 7 3.4443 0.3241 -2.1420 9 14 6.0288 0.8716 -1.3074 10 1 6.6016 1.5431 -0.1131 11 1 6.5212 -0.5279 -1.3716 12 1 6.4454 1.5997 -2.5327 13 7 1.6294 2.1070 1.2442 14 6 1.6088 3.5666 1.0793 15 1 2.4893 3.8815 0.5194 16 6 0.3467 3.9760 0.3176 17 6 0.3249 5.4963 0.1464 18 6 0.3293 6.1645 1.5228 19 6 1.5913 5.7551 2.2846 20 6 1.6134 4.2353 2.4555 21 1 0.7328 3.9204 3.0154 22 6 2.8755 3.8258 3.2172 23 6 4.1073 4.1189 2.3583 24 6 2.9635 4.6194 4.5224 25 6 2.8179 2.3298 3.5329 26 1 -0.3634 0.4584 -0.9198 27 1 -0.3633 -1.0257 0.0631 28 1 -0.3633 0.5675 0.8568 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8810 -0.0791 -2.9085 32 1 0.7330 1.7658 1.5575 33 1 -0.5339 3.6611 0.8775 34 1 0.3434 3.4997 -0.6628 35 1 -0.5740 5.7880 -0.3966 36 1 1.2055 5.8116 -0.4133 37 1 0.3133 7.2476 1.4008 38 1 -0.5513 5.8493 2.0825 39 1 2.4719 6.0704 1.7248 40 1 1.5942 6.2308 3.2652 41 1 4.1483 5.1846 2.1334 42 1 5.0064 3.8267 2.9008 43 1 4.0446 3.5535 1.4285 44 1 2.0859 4.4107 5.1344 45 1 3.8623 4.3274 5.0653 46 1 3.0045 5.6852 4.2976 47 1 3.0132 1.7593 2.6249 48 1 3.5705 2.0876 4.2832 49 1 1.8290 2.0770 3.9152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054181972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:50 Heat of formation + Delta-G solvation = -32.769741 kcal Electronic energy + Delta-G solvation = -23214.534758 eV Core-core repulsion = 20368.076265 eV Total energy + Delta-G solvation = -2846.458493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59495 -35.82892 -35.16085 -32.35098 -31.14090 -29.33972 -27.91196 -26.84524 -26.56168 -25.69833 -22.86518 -22.33174 -21.11319 -19.64593 -19.41493 -17.82801 -16.23214 -15.33396 -14.88546 -14.35006 -14.26634 -13.89740 -13.54785 -13.39213 -13.13969 -12.97872 -12.81726 -12.48209 -12.07659 -12.00421 -11.68761 -11.35470 -11.32363 -11.16797 -10.97589 -10.91437 -10.78903 -10.64110 -10.60018 -10.51258 -10.25019 -10.12222 -9.93236 -9.75869 -9.67730 -9.58559 -9.52310 -9.14292 -8.86217 -8.31119 -6.87384 -5.93355 -3.96639 3.32430 3.41246 3.45616 4.47212 4.99682 5.05688 5.12378 5.35323 5.42589 5.49886 5.53187 5.61008 5.76115 5.82459 5.89639 5.98831 6.00165 6.08341 6.13203 6.16847 6.20111 6.20864 6.30274 6.32661 6.38438 6.43416 6.45332 6.48534 6.53821 6.56563 6.59871 6.74434 6.82240 6.88729 6.89600 6.96859 7.03516 7.15410 7.22577 7.26392 7.60584 7.72958 7.84076 8.01741 8.39972 8.45052 8.83850 9.13130 9.68448 11.11907 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.007726 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.449911 B = 3623.027735 C = 4179.929297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.490 4.490 6 H 0.069 0.931 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.670 5.670 14 C 0.099 3.901 15 H 0.088 0.912 16 C -0.149 4.149 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.062 4.062 21 H 0.057 0.943 22 C -0.045 4.045 23 C -0.152 4.152 24 C -0.144 4.144 25 C -0.142 4.142 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.314 0.686 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.048 0.952 47 H 0.119 0.881 48 H 0.019 0.981 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 8.140 7.800 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.087 0.913 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.300 5.300 14 C -0.012 4.012 15 H 0.106 0.894 16 C -0.189 4.189 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.081 4.081 21 H 0.075 0.925 22 C -0.045 4.045 23 C -0.208 4.208 24 C -0.201 4.201 25 C -0.199 4.199 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.137 0.863 48 H 0.038 0.962 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.390 8.010 7.899 12.076 hybrid contribution 0.100 0.099 -0.699 0.713 sum -4.289 8.109 7.200 11.662 Atomic orbital electron populations 1.21883 0.99830 0.99314 0.99667 1.21744 0.91005 1.00604 1.02892 1.19158 0.95117 0.89723 0.85141 0.98014 1.21344 0.91155 1.35631 1.04731 0.91330 1.24942 0.97748 0.95848 0.95949 1.69884 1.34546 1.39267 1.09875 0.86609 0.86432 0.77560 0.77842 1.19676 1.21303 1.21417 1.61121 1.32034 1.02552 1.34259 1.21540 0.96481 0.89395 0.93774 0.89444 1.22313 0.99663 0.95420 1.01455 1.21462 1.01105 0.96032 0.96631 1.21525 0.98350 0.99056 0.96463 1.21703 0.97667 0.96591 0.99578 1.21141 0.97231 0.93296 0.96423 0.92484 1.20262 0.94609 0.96319 0.93332 1.22120 0.96426 1.00385 1.01907 1.22026 1.00569 0.99686 0.97813 1.22213 0.98672 0.95370 1.03625 0.94091 0.94673 0.94495 0.88545 0.94141 0.93306 0.86806 0.93131 0.91874 0.93077 0.92137 0.92901 0.92636 0.91877 0.92280 0.94219 0.94140 0.89374 0.93621 0.93585 0.93257 0.86317 0.96160 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.79 37.16 0.36 -2.45 16 2 C -0.12 -2.80 5.38 -26.73 -0.14 -2.94 16 3 C 0.22 4.96 1.89 -68.86 -0.13 4.83 16 4 H 0.00 0.06 6.59 -51.93 -0.34 -0.28 16 5 C -0.49 -12.55 7.97 -34.44 -0.27 -12.83 16 6 H 0.07 1.76 5.22 -52.49 -0.27 1.49 16 7 C 0.06 1.48 5.30 -17.82 -0.09 1.38 16 8 N -0.90 -24.86 11.30 55.43 0.63 -24.23 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.67 -12.76 2.40 -100.95 -0.24 -13.01 16 14 C 0.10 1.71 1.23 -67.71 -0.08 1.63 16 15 H 0.09 1.76 5.81 -51.93 -0.30 1.46 16 16 C -0.15 -2.41 5.16 -26.73 -0.14 -2.55 16 17 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 18 C -0.12 -1.46 5.92 -26.73 -0.16 -1.61 16 19 C -0.12 -1.56 4.45 -26.75 -0.12 -1.68 16 20 C -0.06 -0.93 1.40 -90.64 -0.13 -1.06 16 21 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 22 C -0.05 -0.70 0.58 -154.51 -0.09 -0.79 16 23 C -0.15 -2.55 7.67 37.16 0.28 -2.26 16 24 C -0.14 -1.93 7.88 37.16 0.29 -1.64 16 25 C -0.14 -2.41 7.43 37.16 0.28 -2.14 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.63 6.26 -51.93 -0.33 0.30 16 29 H 0.10 2.49 5.98 -51.93 -0.31 2.18 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.31 5.72 6.24 -39.29 -0.25 5.47 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.16 6.88 -51.93 -0.36 0.80 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.88 6.62 -51.93 -0.34 0.54 16 40 H 0.06 0.72 6.33 -51.93 -0.33 0.39 16 41 H 0.04 0.61 6.62 -51.93 -0.34 0.26 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.74 4.05 -51.93 -0.21 1.53 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.61 6.33 -51.93 -0.33 0.28 16 47 H 0.12 2.37 5.03 -51.93 -0.26 2.11 16 48 H 0.02 0.32 8.06 -51.93 -0.42 -0.09 16 49 H 0.03 0.57 7.99 -51.93 -0.41 0.16 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -25.32 342.44 -8.78 -34.10 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -9.01 Total: 7.78 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -0.30 Total: -25.86 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.38 Total: -37.24 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -25.32 -8.78 -34.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054181972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.330 kcal (2) G-P(sol) polarization free energy of solvation -25.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds