Wall clock time and date at job start Mon Mar 30 2020 07:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47378 * 2 1 4 4 H 1.08998 * 109.47227 * 303.93217 * 3 2 1 5 5 C 1.50701 * 109.47403 * 183.92409 * 3 2 1 6 6 H 1.07994 * 120.00116 * 240.00846 * 5 3 2 7 7 C 1.37875 * 119.99515 * 60.00395 * 5 3 2 8 8 N 1.31519 * 120.00326 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00109 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46652 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47575 * 119.99913 * 9 7 5 12 12 H 1.48499 * 109.47130 * 240.00397 * 9 7 5 13 13 N 1.46903 * 109.46598 * 63.93121 * 3 2 1 14 14 C 1.46901 * 110.99523 * 202.59877 * 13 3 2 15 15 H 1.08993 * 109.47271 * 317.56411 * 14 13 3 16 16 C 1.52997 * 109.47286 * 77.56980 * 14 13 3 17 17 C 1.53007 * 109.47107 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46985 * 300.00249 * 17 16 14 19 19 C 1.52994 * 109.47709 * 59.99746 * 18 17 16 20 20 C 1.53006 * 109.46628 * 197.56853 * 14 13 3 21 21 H 1.09001 * 109.47142 * 299.99613 * 20 14 13 22 22 C 1.52997 * 109.47183 * 60.00064 * 20 14 13 23 23 C 1.52996 * 109.47321 * 53.40214 * 22 20 14 24 24 C 1.53005 * 109.46994 * 173.40054 * 22 20 14 25 25 C 1.53003 * 109.46996 * 293.39667 * 22 20 14 26 26 H 1.09003 * 109.47153 * 63.51243 * 1 2 3 27 27 H 1.08997 * 109.47081 * 183.51791 * 1 2 3 28 28 H 1.08999 * 109.46909 * 303.52033 * 1 2 3 29 29 H 1.09004 * 109.47476 * 240.00497 * 2 1 3 30 30 H 1.08996 * 109.47633 * 120.00455 * 2 1 3 31 31 H 0.96994 * 120.00076 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00234 * 326.54461 * 13 3 2 33 33 H 1.09001 * 109.47450 * 59.99795 * 16 14 13 34 34 H 1.08992 * 109.47058 * 299.99406 * 16 14 13 35 35 H 1.08994 * 109.47432 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46908 * 59.99739 * 17 16 14 37 37 H 1.09006 * 109.46885 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46881 * 299.99506 * 18 17 16 39 39 H 1.09001 * 109.47145 * 59.99921 * 19 18 17 40 40 H 1.08992 * 109.47365 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47275 * 59.99900 * 23 22 20 42 42 H 1.09003 * 109.46983 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.46656 * 299.99813 * 23 22 20 44 44 H 1.09006 * 109.47083 * 59.99846 * 24 22 20 45 45 H 1.08994 * 109.46881 * 179.97438 * 24 22 20 46 46 H 1.09001 * 109.47159 * 299.99829 * 24 22 20 47 47 H 1.08999 * 109.46500 * 74.47746 * 25 22 20 48 48 H 1.09000 * 109.46971 * 194.47701 * 25 22 20 49 49 H 1.09003 * 109.47276 * 314.48241 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6204 1.9763 -0.8526 5 6 3.5440 1.4436 -0.0972 6 1 4.1354 1.8929 0.6867 7 6 4.1646 0.8709 -1.1871 8 7 3.4443 0.3241 -2.1420 9 14 6.0288 0.8716 -1.3074 10 1 6.6016 1.5431 -0.1131 11 1 6.5212 -0.5279 -1.3716 12 1 6.4454 1.5997 -2.5327 13 7 1.6294 2.1070 1.2442 14 6 1.6088 3.5666 1.0793 15 1 2.4893 3.8815 0.5194 16 6 0.3467 3.9760 0.3176 17 6 0.3249 5.4963 0.1464 18 6 0.3293 6.1645 1.5228 19 6 1.5913 5.7551 2.2846 20 6 1.6134 4.2353 2.4555 21 1 0.7328 3.9204 3.0154 22 6 2.8755 3.8258 3.2172 23 6 4.1073 4.1189 2.3583 24 6 2.9635 4.6194 4.5224 25 6 2.8179 2.3298 3.5329 26 1 -0.3634 0.4584 -0.9198 27 1 -0.3633 -1.0257 0.0631 28 1 -0.3633 0.5675 0.8568 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8810 -0.0791 -2.9085 32 1 0.7330 1.7658 1.5575 33 1 -0.5339 3.6611 0.8775 34 1 0.3434 3.4997 -0.6628 35 1 -0.5740 5.7880 -0.3966 36 1 1.2055 5.8116 -0.4133 37 1 0.3133 7.2476 1.4008 38 1 -0.5513 5.8493 2.0825 39 1 2.4719 6.0704 1.7248 40 1 1.5942 6.2308 3.2652 41 1 4.1483 5.1846 2.1334 42 1 5.0064 3.8267 2.9008 43 1 4.0446 3.5535 1.4285 44 1 2.0859 4.4107 5.1344 45 1 3.8623 4.3274 5.0653 46 1 3.0045 5.6852 4.2976 47 1 3.0132 1.7593 2.6249 48 1 3.5705 2.0876 4.2832 49 1 1.8290 2.0770 3.9152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054181972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:49 Heat of formation + Delta-G solvation = -43.509403 kcal Electronic energy + Delta-G solvation = -23215.000465 eV Core-core repulsion = 20368.076265 eV Total energy + Delta-G solvation = -2846.924200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90738 -37.48618 -36.40775 -34.19899 -32.78177 -30.55717 -29.46855 -28.19609 -27.85020 -27.37210 -24.64945 -23.55116 -22.43487 -21.31202 -20.79382 -19.13777 -18.19081 -16.77859 -16.63671 -15.83103 -15.63315 -15.37549 -14.86670 -14.75562 -14.57906 -14.40319 -14.22232 -13.82723 -13.62279 -13.40665 -13.20441 -12.96384 -12.73767 -12.66983 -12.54581 -12.44555 -12.24073 -12.13761 -11.97012 -11.79797 -11.78789 -11.55300 -11.44932 -11.40647 -11.25687 -10.96148 -10.92327 -10.64160 -10.48245 -10.35223 -8.50421 -7.98364 -6.07493 1.38793 1.42735 1.52610 2.47147 3.27025 3.70331 3.83455 3.95845 4.20016 4.26233 4.34016 4.37356 4.53172 4.59908 4.61869 4.63178 4.67319 4.75648 4.79190 4.83702 4.89596 4.97105 4.98201 5.07714 5.11651 5.15412 5.23189 5.26595 5.30089 5.31083 5.33282 5.36795 5.38342 5.45917 5.48819 5.50633 5.58811 5.65157 5.73540 5.78972 5.85002 5.91468 6.05373 6.29582 6.49217 6.68241 7.10244 7.16855 7.60935 9.04222 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.007726 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.449911 B = 3623.027735 C = 4179.929297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.228 3.772 4 H -0.033 1.033 5 C -0.491 4.491 6 H 0.064 0.936 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.661 5.661 14 C 0.102 3.898 15 H 0.054 0.946 16 C -0.144 4.144 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.054 4.054 21 H 0.065 0.935 22 C -0.045 4.045 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.321 0.679 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.022 0.978 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 9.808 9.972 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.530 4.530 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.564 5.564 9 Si 0.768 3.232 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.291 5.291 14 C -0.009 4.009 15 H 0.072 0.928 16 C -0.184 4.184 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.073 4.073 21 H 0.083 0.917 22 C -0.045 4.045 23 C -0.204 4.204 24 C -0.194 4.194 25 C -0.194 4.194 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.041 0.959 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.357 9.690 10.086 14.977 hybrid contribution 0.409 -0.421 -1.374 1.494 sum -4.948 9.269 8.712 13.649 Atomic orbital electron populations 1.21736 0.96699 1.00853 1.00181 1.21569 0.93823 0.99625 1.00833 1.18851 0.93652 0.90036 0.85531 1.01536 1.21651 0.92778 1.34415 1.04188 0.91791 1.25591 1.01217 0.96129 0.96044 1.70019 1.35723 1.40371 1.10326 0.85768 0.82433 0.77341 0.77676 1.19259 1.21234 1.21433 1.61066 1.32420 1.03701 1.31897 1.21500 0.95718 0.88238 0.95397 0.92780 1.22223 0.99356 0.97153 0.99631 1.21451 1.01225 0.94217 0.98150 1.21497 0.98234 1.00107 0.94940 1.21692 0.97860 0.94888 1.00788 1.21073 0.97254 0.94581 0.94377 0.91661 1.20256 0.94058 0.95702 0.94463 1.22044 0.97259 1.00627 1.00477 1.21941 1.01227 1.00002 0.96255 1.22095 0.99080 0.96200 1.02048 0.94851 0.92812 0.92406 0.91967 0.94683 0.93614 0.86031 0.91821 0.95050 0.91682 0.93426 0.90852 0.91485 0.92802 0.90102 0.92881 0.94322 0.92888 0.92449 0.93487 0.91841 0.89566 0.95937 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.79 71.98 0.70 -4.41 16 2 C -0.12 -5.56 5.38 30.60 0.16 -5.40 16 3 C 0.23 10.88 1.89 44.17 0.08 10.96 16 4 H -0.03 -1.79 6.59 -2.39 -0.02 -1.80 16 5 C -0.49 -26.19 7.97 25.60 0.20 -25.99 16 6 H 0.06 3.42 5.22 -2.91 -0.02 3.41 16 7 C 0.01 0.40 5.30 84.65 0.45 0.85 16 8 N -0.92 -53.29 11.30 21.45 0.24 -53.05 16 9 Si 0.94 44.51 29.54 68.60 2.03 46.54 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 13 N -0.66 -25.49 2.40 -473.29 -1.14 -26.62 16 14 C 0.10 3.53 1.23 44.92 0.06 3.59 16 15 H 0.05 2.26 5.81 -2.39 -0.01 2.25 16 16 C -0.14 -4.61 5.16 30.60 0.16 -4.45 16 17 C -0.11 -2.96 5.92 30.60 0.18 -2.78 16 18 C -0.11 -2.38 5.92 30.59 0.18 -2.19 16 19 C -0.11 -2.69 4.45 30.58 0.14 -2.55 16 20 C -0.05 -1.51 1.40 -10.81 -0.02 -1.52 16 21 H 0.06 1.77 8.04 -2.39 -0.02 1.75 16 22 C -0.04 -1.31 0.58 -52.18 -0.03 -1.34 16 23 C -0.15 -4.88 7.67 71.98 0.55 -4.33 16 24 C -0.14 -3.21 7.88 71.98 0.57 -2.65 16 25 C -0.14 -4.52 7.43 71.98 0.53 -3.98 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.89 6.26 -2.39 -0.01 1.88 16 29 H 0.06 3.34 5.98 -2.38 -0.01 3.33 16 30 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 32 H 0.32 11.47 6.24 -89.69 -0.56 10.91 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.03 1.18 6.88 -2.39 -0.02 1.17 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 1.38 6.62 -2.39 -0.02 1.36 16 40 H 0.08 1.60 6.33 -2.39 -0.02 1.59 16 41 H 0.05 1.57 6.62 -2.39 -0.02 1.56 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 2.15 4.05 -2.39 -0.01 2.14 16 44 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 1.32 6.33 -2.39 -0.02 1.30 16 47 H 0.09 3.47 5.03 -2.39 -0.01 3.46 16 48 H 0.02 0.70 8.06 -2.39 -0.02 0.68 16 49 H 0.04 1.31 7.99 -2.39 -0.02 1.29 16 Total: -1.00 -56.82 342.44 5.40 -51.42 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.35 Total: 27.90 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 3.93 Total: -46.18 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -0.89 Total: -79.67 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -56.82 5.40 -51.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054181972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.909 kcal (2) G-P(sol) polarization free energy of solvation -56.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds