Wall clock time and date at job start Mon Mar 30 2020 07:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 H 1.09002 * 109.46827 * 306.75107 * 3 2 1 5 5 C 1.50702 * 109.47055 * 186.76046 * 3 2 1 6 6 H 1.08004 * 119.99986 * 244.09647 * 5 3 2 7 7 C 1.37886 * 120.00132 * 64.09215 * 5 3 2 8 8 N 1.31512 * 120.00084 * 193.82989 * 7 5 3 9 9 Si 1.86795 * 119.99709 * 13.83363 * 7 5 3 10 10 H 1.48495 * 109.47321 * 92.73347 * 9 7 5 11 11 H 1.48501 * 109.47059 * 212.73378 * 9 7 5 12 12 H 1.48495 * 109.47248 * 332.72961 * 9 7 5 13 13 N 1.46891 * 109.47208 * 66.75823 * 3 2 1 14 14 C 1.46900 * 110.99979 * 261.36429 * 13 3 2 15 15 H 1.08999 * 109.46970 * 39.44506 * 14 13 3 16 16 C 1.52995 * 109.47655 * 279.43972 * 14 13 3 17 17 C 1.52997 * 109.47475 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.46747 * 299.99700 * 17 16 14 19 19 C 1.53001 * 109.47210 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.47305 * 59.99898 * 17 16 14 21 21 C 1.53001 * 109.47190 * 300.00262 * 20 17 16 22 22 C 1.52997 * 109.47210 * 59.99680 * 21 20 17 23 23 H 1.09001 * 109.47384 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.46898 * 60.00508 * 22 21 20 25 25 C 1.52997 * 109.47185 * 54.45992 * 24 22 21 26 26 C 1.53001 * 109.47349 * 174.46568 * 24 22 21 27 27 H 1.09003 * 109.47170 * 61.80914 * 1 2 3 28 28 H 1.08999 * 109.47608 * 181.81142 * 1 2 3 29 29 H 1.09001 * 109.47145 * 301.81081 * 1 2 3 30 30 H 1.09000 * 109.47184 * 239.99827 * 2 1 3 31 31 H 1.09003 * 109.47168 * 120.00072 * 2 1 3 32 32 H 0.96994 * 119.99990 * 180.02562 * 8 7 5 33 33 H 1.00893 * 111.00528 * 25.32309 * 13 3 2 34 34 H 1.09008 * 109.47181 * 300.00279 * 16 14 13 35 35 H 1.09001 * 109.47056 * 59.99518 * 16 14 13 36 36 H 1.08998 * 109.47051 * 60.00020 * 19 17 16 37 37 H 1.09004 * 109.47007 * 179.97438 * 19 17 16 38 38 H 1.08997 * 109.47088 * 299.99471 * 19 17 16 39 39 H 1.09004 * 109.47260 * 180.02562 * 20 17 16 40 40 H 1.08997 * 109.47276 * 60.00355 * 20 17 16 41 41 H 1.09006 * 109.46901 * 300.00221 * 21 20 17 42 42 H 1.09001 * 109.47309 * 180.02562 * 21 20 17 43 43 H 1.09008 * 109.46694 * 294.45851 * 24 22 21 44 44 H 1.08999 * 109.47222 * 300.00037 * 25 24 22 45 45 H 1.08994 * 109.47397 * 60.00339 * 25 24 22 46 46 H 1.08999 * 109.46636 * 180.02562 * 25 24 22 47 47 H 1.09000 * 109.47263 * 70.97702 * 26 24 22 48 48 H 1.08997 * 109.47198 * 190.98659 * 26 24 22 49 49 H 1.09007 * 109.46705 * 310.98283 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5813 1.9900 -0.8234 5 6 3.5376 1.4458 -0.1673 6 1 4.1686 1.8222 0.6244 7 6 4.1025 0.9681 -1.3309 8 7 5.3921 0.7149 -1.3802 9 14 3.0359 0.6807 -2.8373 10 1 3.0484 1.8952 -3.6916 11 1 3.5679 -0.4720 -3.6078 12 1 1.6438 0.3902 -2.4100 13 7 1.6879 2.0863 1.2725 14 6 0.4774 2.9063 1.1304 15 1 -0.2371 2.3912 0.4885 16 6 0.8446 4.2540 0.5062 17 6 -0.4161 5.1083 0.3589 18 1 -1.1309 4.5933 -0.2830 19 6 -0.0489 6.4558 -0.2660 20 6 -1.0407 5.3377 1.7366 21 6 -1.4079 3.9900 2.3608 22 6 -0.1472 3.1357 2.5082 23 1 -0.4089 2.1754 2.9525 24 6 0.8561 3.8585 3.4092 25 6 0.1862 4.2106 4.7389 26 6 2.0574 2.9471 3.6688 27 1 -0.3634 0.4855 -0.9058 28 1 -0.3634 -1.0271 0.0325 29 1 -0.3633 0.5417 0.8733 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.7894 0.3792 -2.1988 33 1 1.5771 1.4020 2.0056 34 1 1.5592 4.7692 1.1483 35 1 1.2900 4.0906 -0.4751 36 1 0.3958 6.2920 -1.2475 37 1 -0.9472 7.0642 -0.3713 38 1 0.6660 6.9710 0.3755 39 1 -1.9391 5.9459 1.6315 40 1 -0.3259 5.8527 2.3784 41 1 -2.1228 3.4750 1.7189 42 1 -1.8533 4.1534 3.3422 43 1 1.1925 4.7720 2.9186 44 1 -0.6695 4.8600 4.5539 45 1 -0.1501 3.2972 5.2294 46 1 0.9010 4.7259 5.3805 47 1 2.6467 2.8540 2.7566 48 1 2.6747 3.3757 4.4582 49 1 1.7062 1.9621 3.9766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:12 Heat of formation + Delta-G solvation = -25.231546 kcal Electronic energy + Delta-G solvation = -22981.980739 eV Core-core repulsion = 20135.849126 eV Total energy + Delta-G solvation = -2846.131613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92428 -36.22319 -34.80407 -32.37658 -31.39278 -30.85953 -28.58915 -26.88048 -26.28282 -25.90491 -22.61843 -22.14622 -20.92307 -20.57122 -19.74730 -17.94433 -16.69859 -15.60585 -15.18885 -14.50244 -14.32102 -14.26202 -13.96667 -13.71469 -13.45448 -13.09476 -12.70446 -12.56335 -12.26826 -11.96865 -11.88027 -11.77902 -11.65609 -11.58664 -11.51444 -11.28714 -10.90417 -10.80942 -10.72201 -10.65608 -10.59340 -10.29511 -10.09743 -9.93577 -9.85425 -9.60838 -9.51296 -9.23783 -9.13790 -8.34139 -7.14488 -6.00825 -3.92424 3.30264 3.39609 3.42336 4.47622 4.76946 4.86469 4.94727 5.23372 5.24632 5.27209 5.34495 5.44135 5.49965 5.70073 5.73042 5.75519 5.80989 5.83811 5.87074 5.90098 5.94810 5.96548 6.03015 6.05858 6.08912 6.12945 6.20876 6.27118 6.29025 6.35812 6.41566 6.46233 6.52039 6.58358 6.63316 6.65208 6.73720 6.79090 6.86652 6.95406 7.01799 7.24229 7.33446 7.84529 8.04965 8.45171 8.78827 9.16127 9.66312 11.12770 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.006738 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.018987 B = 4154.282643 C = 4531.676091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.151 4.151 3 C 0.188 3.812 4 H 0.024 0.976 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.857 3.143 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.659 5.659 14 C 0.089 3.911 15 H 0.036 0.964 16 C -0.102 4.102 17 C -0.093 4.093 18 H 0.061 0.939 19 C -0.145 4.145 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.081 4.081 23 H 0.060 0.940 24 C -0.081 4.081 25 C -0.150 4.150 26 C -0.167 4.167 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.261 0.739 33 H 0.331 0.669 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.117 0.883 48 H 0.033 0.967 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.893 7.016 7.135 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.191 4.191 3 C 0.079 3.921 4 H 0.042 0.958 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.178 1.178 13 N -0.290 5.290 14 C -0.021 4.021 15 H 0.054 0.946 16 C -0.140 4.140 17 C -0.112 4.112 18 H 0.080 0.920 19 C -0.202 4.202 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.100 4.100 23 H 0.078 0.922 24 C -0.099 4.099 25 C -0.207 4.207 26 C -0.224 4.224 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.135 0.865 48 H 0.052 0.948 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.306 7.462 6.923 16.753 hybrid contribution -1.207 -1.005 -1.053 1.891 sum -14.513 6.457 5.869 16.934 Atomic orbital electron populations 1.21975 0.98665 0.99979 1.00632 1.22650 0.92687 1.01954 1.01765 1.19636 0.96662 0.88020 0.87763 0.95781 1.20997 0.89347 1.40199 1.02618 0.90213 1.24903 0.94639 0.95041 0.98527 1.69957 1.11295 1.45043 1.27347 0.87339 0.82362 0.77757 0.84121 1.20945 1.21657 1.17769 1.61079 1.32487 1.27192 1.08248 1.21573 0.91500 0.94710 0.94335 0.94584 1.21612 0.96034 0.94772 1.01538 1.21148 0.97935 0.96040 0.96056 0.92008 1.21803 1.00759 0.96835 1.00820 1.21594 0.99911 0.96910 0.96503 1.21593 0.97250 0.96136 1.00218 1.21320 0.94595 0.98133 0.95926 0.92155 1.21057 0.95375 0.99380 0.94117 1.21980 1.00203 1.00734 0.97814 1.22381 0.98188 0.97485 1.04359 0.93745 0.94224 0.93355 0.92202 0.92644 0.92940 0.85008 0.91068 0.91815 0.92739 0.93384 0.92758 0.92947 0.91639 0.92678 0.91999 0.90836 0.93051 0.93399 0.93400 0.86467 0.94821 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.84 37.15 0.33 -2.37 16 2 C -0.15 -3.16 4.48 -26.73 -0.12 -3.28 16 3 C 0.19 4.19 1.49 -68.87 -0.10 4.09 16 4 H 0.02 0.57 5.62 -51.93 -0.29 0.28 16 5 C -0.49 -13.46 9.29 -34.44 -0.32 -13.78 16 6 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 7 C 0.07 1.99 5.34 -17.82 -0.10 1.89 16 8 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 9 Si 0.86 21.09 25.74 -169.99 -4.37 16.72 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.25 -5.83 5.39 56.52 0.30 -5.53 16 13 N -0.66 -12.35 2.91 -100.96 -0.29 -12.64 16 14 C 0.09 1.42 1.26 -67.71 -0.09 1.33 16 15 H 0.04 0.61 5.83 -51.93 -0.30 0.31 16 16 C -0.10 -1.62 4.36 -26.74 -0.12 -1.74 16 17 C -0.09 -1.21 2.72 -90.62 -0.25 -1.45 16 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 20 C -0.11 -1.28 4.93 -26.73 -0.13 -1.41 16 21 C -0.11 -1.32 4.95 -26.73 -0.13 -1.46 16 22 C -0.08 -1.08 1.88 -90.62 -0.17 -1.25 16 23 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 24 C -0.08 -1.07 1.80 -90.62 -0.16 -1.24 16 25 C -0.15 -1.71 8.66 37.16 0.32 -1.38 16 26 C -0.17 -2.50 7.71 37.16 0.29 -2.21 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.77 6.21 -51.93 -0.32 0.45 16 30 H 0.06 1.35 4.77 -51.93 -0.25 1.11 16 31 H 0.05 1.14 7.99 -51.93 -0.41 0.73 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.33 5.96 6.18 -39.30 -0.24 5.71 16 34 H 0.07 1.18 6.31 -51.92 -0.33 0.85 16 35 H 0.06 1.18 7.33 -51.93 -0.38 0.80 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 43 H 0.07 1.04 4.83 -51.92 -0.25 0.79 16 44 H 0.05 0.53 6.33 -51.93 -0.33 0.21 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.12 2.11 5.58 -51.93 -0.29 1.82 16 48 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 49 H 0.04 0.57 7.58 -51.93 -0.39 0.17 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -27.98 340.53 -8.35 -36.33 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -9.19 Total: 6.63 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -0.40 Total: -25.63 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.48 Total: -39.18 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.37 Total: 16.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.98 -8.35 -36.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.102 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds