Wall clock time and date at job start Mon Mar 30 2020 07:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09004 * 109.47323 * 55.00118 * 3 2 1 5 5 C 1.52997 * 109.47442 * 294.99836 * 3 2 1 6 6 C 1.52998 * 109.47442 * 179.97438 * 5 3 2 7 7 C 1.52989 * 109.47092 * 60.00261 * 6 5 3 8 8 C 1.53008 * 109.47203 * 299.99866 * 7 6 5 9 9 H 1.08996 * 109.47133 * 300.00203 * 8 7 6 10 10 N 1.46898 * 109.47485 * 180.02562 * 8 7 6 11 11 C 1.46908 * 110.99711 * 306.04881 * 10 8 7 12 12 C 1.50698 * 109.46913 * 189.99976 * 11 10 8 13 13 H 1.08006 * 120.00066 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00045 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 119.99891 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47335 * 90.00120 * 16 14 12 18 18 H 1.48505 * 109.47391 * 210.00114 * 16 14 12 19 19 H 1.48502 * 109.47454 * 330.00096 * 16 14 12 20 20 C 1.46901 * 110.99960 * 69.99812 * 10 8 7 21 21 C 1.53000 * 109.46769 * 70.00462 * 20 10 8 22 22 C 1.52993 * 109.47345 * 65.00032 * 21 20 10 23 23 C 1.53006 * 109.46846 * 185.00040 * 21 20 10 24 24 C 1.52998 * 109.46987 * 60.00070 * 8 7 6 25 25 H 1.09001 * 109.46979 * 59.99933 * 1 2 3 26 26 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47311 * 299.99921 * 1 2 3 28 28 H 1.09000 * 109.47311 * 240.00079 * 2 1 3 29 29 H 1.09001 * 109.46979 * 120.00067 * 2 1 3 30 30 H 1.09003 * 109.47160 * 59.99992 * 5 3 2 31 31 H 1.09004 * 109.47092 * 300.00424 * 5 3 2 32 32 H 1.09001 * 109.46691 * 299.99912 * 6 5 3 33 33 H 1.09007 * 109.47166 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47594 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47903 * 59.99750 * 7 6 5 36 36 H 1.09001 * 109.46890 * 309.99727 * 11 10 8 37 37 H 1.09001 * 109.47036 * 70.00012 * 11 10 8 38 38 H 0.97001 * 120.00164 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.47401 * 310.00169 * 20 10 8 40 40 H 1.09001 * 109.46874 * 190.00182 * 20 10 8 41 41 H 1.09002 * 109.47069 * 304.99474 * 21 20 10 42 42 H 1.08993 * 109.47639 * 59.99724 * 22 21 20 43 43 H 1.09004 * 109.47135 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47179 * 299.99584 * 22 21 20 45 45 H 1.09002 * 109.46824 * 299.99583 * 23 21 20 46 46 H 1.09001 * 109.47241 * 59.99481 * 23 21 20 47 47 H 1.08996 * 109.46751 * 179.97438 * 23 21 20 48 48 H 1.09004 * 109.47323 * 59.99976 * 24 8 7 49 49 H 1.08997 * 109.47094 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 2.1447 3.5693 -1.3070 7 6 3.6694 3.5717 -1.1810 8 6 4.0742 2.8876 0.1264 9 1 3.6392 3.4264 0.9681 10 7 5.5382 2.8905 0.2477 11 6 6.1661 2.2989 -0.9414 12 6 7.6365 2.0933 -0.6832 13 1 8.0620 2.3736 0.2691 14 6 8.4385 1.5464 -1.6623 15 7 9.7218 1.3674 -1.4371 16 14 7.7023 1.0595 -3.3085 17 1 7.7733 2.2117 -4.2427 18 1 8.4645 -0.0831 -3.8732 19 1 6.2839 0.6629 -3.1187 20 6 6.0438 4.2484 0.4894 21 6 5.6475 4.6969 1.8975 22 6 6.3497 3.8137 2.9307 23 6 6.0645 6.1544 2.1048 24 6 3.5648 1.4450 0.1261 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5490 2.1253 -1.3969 31 1 2.0699 1.5875 -2.1492 32 1 1.7096 4.1080 -0.4653 33 1 1.8560 4.0567 -2.2383 34 1 4.0324 4.5995 -1.1804 35 1 4.1045 3.0329 -2.0228 36 1 5.6979 1.3391 -1.1600 37 1 6.0367 2.9684 -1.7917 38 1 10.2860 0.9823 -2.1258 39 1 5.6151 4.9317 -0.2437 40 1 7.1300 4.2531 0.3988 41 1 4.5677 4.6075 2.0169 42 1 7.4294 3.9030 2.8114 43 1 6.0677 4.1335 3.9339 44 1 6.0526 2.7754 2.7831 45 1 7.1443 6.2438 1.9854 46 1 5.5643 6.7837 1.3686 47 1 5.7818 6.4740 3.1077 48 1 3.9998 0.9062 -0.7157 49 1 3.8528 0.9578 1.0576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071147919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:13 Heat of formation + Delta-G solvation = -53.327183 kcal Electronic energy + Delta-G solvation = -22335.427825 eV Core-core repulsion = 19488.077894 eV Total energy + Delta-G solvation = -2847.349931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75054 -38.11659 -35.68109 -34.76874 -33.68251 -31.13159 -30.02189 -28.82700 -27.87857 -26.09780 -24.66487 -23.56004 -22.71169 -21.46704 -20.66680 -19.70128 -18.88836 -16.82376 -16.62396 -16.22160 -15.77547 -15.51026 -15.33788 -14.95643 -14.72516 -14.54454 -14.49235 -14.35027 -13.96745 -13.52934 -13.37479 -13.07755 -12.96047 -12.80630 -12.71338 -12.64746 -12.44314 -12.18042 -12.02248 -11.87387 -11.83788 -11.73912 -11.73456 -11.50789 -11.41441 -11.26778 -10.95619 -10.95176 -10.81387 -10.74823 -8.81335 -8.27967 -6.28554 1.29090 1.31028 1.41593 2.32039 3.04930 3.23312 3.73379 3.88381 3.93240 4.10234 4.17991 4.22181 4.26233 4.33325 4.40271 4.50394 4.53597 4.64481 4.68003 4.73109 4.79551 4.80892 4.83999 4.87984 4.90419 4.97455 5.02235 5.09153 5.10864 5.12651 5.17304 5.20136 5.24162 5.29014 5.30947 5.32486 5.35538 5.41879 5.45486 5.56490 5.57252 5.63480 5.64159 5.68011 6.07658 6.50697 6.75997 6.79787 7.34367 8.88871 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.007573 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.167792 B = 3696.259721 C = 5126.979926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.080 0.920 5 C -0.112 4.112 6 C -0.106 4.106 7 C -0.151 4.151 8 C 0.085 3.915 9 H 0.089 0.911 10 N -0.530 5.530 11 C 0.177 3.823 12 C -0.507 4.507 13 H 0.039 0.961 14 C 0.009 3.991 15 N -0.948 5.948 16 Si 0.938 3.062 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.252 1.252 20 C 0.067 3.933 21 C -0.084 4.084 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.102 4.102 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.027 0.973 37 H -0.020 1.020 38 H 0.265 0.735 39 H 0.026 0.974 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.028 0.972 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.975 4.368 3.373 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.099 0.901 5 C -0.149 4.149 6 C -0.144 4.144 7 C -0.191 4.191 8 C -0.023 4.023 9 H 0.107 0.893 10 N -0.252 5.252 11 C 0.050 3.950 12 C -0.546 4.546 13 H 0.057 0.943 14 C -0.188 4.188 15 N -0.590 5.590 16 Si 0.762 3.238 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.176 1.176 20 C -0.061 4.061 21 C -0.102 4.102 22 C -0.186 4.186 23 C -0.198 4.198 24 C -0.140 4.140 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.045 0.955 37 H -0.003 1.003 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.057 0.943 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.672 4.004 3.709 20.415 hybrid contribution 0.752 -0.005 -1.646 1.810 sum -18.920 3.999 2.063 19.447 Atomic orbital electron populations 1.21778 0.94433 1.01880 1.02318 1.21550 0.96938 0.95829 1.01464 1.21117 0.93445 0.96456 0.98524 0.90130 1.21631 1.01239 0.95178 0.96877 1.21431 0.93375 0.97261 1.02335 1.22198 0.97946 1.00142 0.98778 1.21801 0.87380 0.96506 0.96624 0.89309 1.62051 1.04547 1.19995 1.38573 1.19856 0.93119 0.93921 0.88116 1.21327 0.93019 1.39832 1.00391 0.94282 1.25753 0.95002 0.95681 1.02318 1.70047 1.06179 1.46917 1.35812 0.85848 0.79584 0.78422 0.79926 1.19559 1.20649 1.17637 1.22059 0.99252 0.88469 0.96293 1.21085 1.00282 0.95300 0.93558 1.21606 0.99014 0.99888 0.98079 1.21776 1.00928 0.94790 1.02302 1.21594 0.95771 0.95630 1.01015 0.92087 0.92516 0.92118 0.93158 0.92325 0.89840 0.93626 0.90668 0.91579 0.92679 0.94193 0.95535 1.00278 0.92616 0.95624 0.93592 0.90471 0.95241 0.91681 0.93468 0.93840 0.92303 0.90879 0.94311 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.67 71.98 0.70 -1.65 16 2 C -0.12 -2.51 5.40 30.60 0.17 -2.35 16 3 C -0.08 -1.74 2.19 -10.79 -0.02 -1.77 16 4 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 5 C -0.11 -2.40 4.96 30.59 0.15 -2.25 16 6 C -0.11 -2.36 5.92 30.59 0.18 -2.18 16 7 C -0.15 -4.57 4.48 30.59 0.14 -4.43 16 8 C 0.09 2.74 2.09 44.92 0.09 2.83 16 9 H 0.09 2.56 6.21 -2.39 -0.01 2.55 16 10 N -0.53 -21.67 3.87 -875.49 -3.39 -25.06 16 11 C 0.18 8.64 2.74 85.55 0.23 8.87 16 12 C -0.51 -29.88 8.87 25.60 0.23 -29.65 16 13 H 0.04 2.56 7.47 -2.91 -0.02 2.54 16 14 C 0.01 0.56 5.47 84.65 0.46 1.02 16 15 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 16 Si 0.94 45.54 27.47 68.60 1.88 47.42 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 20 C 0.07 2.59 4.10 86.30 0.35 2.95 16 21 C -0.08 -2.53 2.91 -10.79 -0.03 -2.56 16 22 C -0.13 -4.16 9.08 71.98 0.65 -3.51 16 23 C -0.14 -3.55 9.19 71.98 0.66 -2.89 16 24 C -0.10 -3.16 4.43 30.59 0.14 -3.02 16 25 H 0.06 0.90 6.57 -2.39 -0.02 0.89 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.42 6.57 -2.39 -0.02 1.40 16 31 H 0.04 1.11 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.05 1.68 6.51 -2.39 -0.02 1.66 16 35 H 0.04 1.40 6.55 -2.39 -0.02 1.39 16 36 H 0.03 1.33 5.14 -2.39 -0.01 1.31 16 37 H -0.02 -1.00 6.26 -2.39 -0.01 -1.02 16 38 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.03 0.95 6.29 -2.39 -0.02 0.93 16 40 H 0.05 2.14 6.60 -2.39 -0.02 2.13 16 41 H 0.08 2.10 6.35 -2.39 -0.02 2.09 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.05 1.71 7.75 -2.39 -0.02 1.69 16 45 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.04 1.39 6.37 -2.38 -0.02 1.38 16 49 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.53 354.49 3.71 -61.82 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.82 Total: 16.54 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 4.10 Total: -40.58 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -3.09 Total: -85.20 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -65.53 3.71 -61.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.489 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds