Wall clock time and date at job start Mon Mar 30 2020 07:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 H 1.08999 * 109.47409 * 55.00053 * 3 2 1 5 5 C 1.53004 * 109.47153 * 294.99969 * 3 2 1 6 6 C 1.53003 * 109.46827 * 299.99972 * 5 3 2 7 7 C 1.52995 * 109.47228 * 299.99698 * 6 5 3 8 8 C 1.53004 * 109.46970 * 60.00389 * 7 6 5 9 9 H 1.08994 * 109.47173 * 60.00021 * 8 7 6 10 10 N 1.46903 * 109.46777 * 180.02562 * 8 7 6 11 11 C 1.46901 * 111.00303 * 69.48099 * 10 8 7 12 12 C 1.50697 * 109.47449 * 189.99820 * 11 10 8 13 13 H 1.08008 * 119.99590 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00395 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00122 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47232 * 119.99760 * 16 14 12 19 19 H 1.48502 * 109.46867 * 239.99609 * 16 14 12 20 20 C 1.46900 * 110.99737 * 193.43216 * 10 8 7 21 21 C 1.53001 * 109.47229 * 75.85967 * 20 10 8 22 22 C 1.53002 * 109.46825 * 64.42046 * 21 20 10 23 23 C 1.52997 * 109.47141 * 184.41526 * 21 20 10 24 24 C 1.53002 * 109.47543 * 174.99963 * 3 2 1 25 25 H 1.08995 * 109.47207 * 60.00334 * 1 2 3 26 26 H 1.09008 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47219 * 299.99535 * 1 2 3 28 28 H 1.09002 * 109.47458 * 239.99991 * 2 1 3 29 29 H 1.09003 * 109.47343 * 119.99951 * 2 1 3 30 30 H 1.09001 * 109.47094 * 59.99789 * 5 3 2 31 31 H 1.08993 * 109.47530 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47290 * 60.00265 * 6 5 3 33 33 H 1.09002 * 109.47317 * 179.97438 * 6 5 3 34 34 H 1.08993 * 109.47311 * 299.99867 * 7 6 5 35 35 H 1.09001 * 109.47552 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46833 * 309.99956 * 11 10 8 37 37 H 1.08996 * 109.47166 * 69.99414 * 11 10 8 38 38 H 0.96998 * 120.00709 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47206 * 195.86377 * 20 10 8 40 40 H 1.09008 * 109.46958 * 315.85906 * 20 10 8 41 41 H 1.08995 * 109.47515 * 304.41802 * 21 20 10 42 42 H 1.08995 * 109.47274 * 59.99607 * 22 21 20 43 43 H 1.08997 * 109.47098 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46912 * 299.99585 * 22 21 20 45 45 H 1.08998 * 109.47226 * 59.99973 * 23 21 20 46 46 H 1.08999 * 109.47507 * 180.02562 * 23 21 20 47 47 H 1.09000 * 109.47539 * 300.00239 * 23 21 20 48 48 H 1.09003 * 109.46843 * 300.00556 * 24 3 2 49 49 H 1.08993 * 109.47532 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.2453 1.3698 -2.4890 7 6 3.7701 1.3717 -2.3633 8 6 4.1749 0.6877 -1.0559 9 1 3.8116 -0.3400 -1.0559 10 7 5.6389 0.6900 -0.9349 11 6 6.1461 2.0495 -0.7057 12 6 7.6478 2.0533 -0.8312 13 1 8.1730 1.1372 -1.0582 14 6 8.3513 3.2261 -0.6564 15 7 7.7117 4.3417 -0.3805 16 14 10.2129 3.2306 -0.8113 17 1 10.6869 1.8584 -1.1239 18 1 10.6166 4.1546 -1.9015 19 1 10.8150 3.6823 0.4688 20 6 6.0808 -0.2228 0.1278 21 6 5.9771 -1.6676 -0.3650 22 6 6.9479 -1.8805 -1.5283 23 6 6.3318 -2.6225 0.7765 24 6 3.5648 1.4444 0.1257 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5489 2.1252 -1.3970 31 1 1.9989 3.1540 -1.3076 32 1 1.8820 0.3422 -2.4890 33 1 1.9567 1.8569 -3.4204 34 1 4.1334 2.3993 -2.3633 35 1 4.2048 0.8323 -3.2048 36 1 5.7179 2.7265 -1.4450 37 1 5.8643 2.3786 0.2945 38 1 8.2066 5.1667 -0.2571 39 1 7.1154 -0.0017 0.3899 40 1 5.4477 -0.0920 1.0056 41 1 4.9590 -1.8648 -0.7007 42 1 7.9660 -1.6832 -1.1926 43 1 6.8738 -2.9095 -1.8797 44 1 6.6952 -1.2001 -2.3415 45 1 5.6402 -2.4709 1.6052 46 1 6.2583 -3.6518 0.4253 47 1 7.3498 -2.4254 1.1122 48 1 3.8532 0.9570 1.0571 49 1 3.9282 2.4720 0.1253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071147922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:17 Heat of formation + Delta-G solvation = -38.803410 kcal Electronic energy + Delta-G solvation = -22527.499279 eV Core-core repulsion = 19680.779147 eV Total energy + Delta-G solvation = -2846.720133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.54339 -36.72383 -34.15184 -32.73785 -31.98851 -29.53081 -28.59689 -26.90121 -26.60124 -24.47242 -23.28819 -22.50167 -21.72954 -20.23779 -19.05191 -17.75727 -16.31041 -15.65133 -14.99002 -14.73390 -14.45322 -14.13358 -13.94964 -13.62191 -13.35114 -13.23274 -12.67544 -12.56255 -12.22691 -12.02177 -11.88581 -11.79665 -11.73092 -11.44076 -11.40620 -10.99703 -10.96264 -10.82395 -10.66598 -10.57487 -10.45043 -10.39659 -10.18403 -9.92455 -9.87833 -9.69238 -9.67848 -9.26313 -9.02233 -8.36982 -7.02465 -5.97756 -3.97638 3.32800 3.40567 3.45233 4.46442 4.86439 4.91930 4.99515 5.21072 5.31891 5.37089 5.41662 5.43642 5.49306 5.54700 5.68073 5.71225 5.77828 5.87174 5.87946 5.93566 6.01052 6.02899 6.06058 6.09571 6.13356 6.21708 6.24021 6.26484 6.33926 6.41106 6.47934 6.55557 6.56367 6.61353 6.65008 6.66951 6.72703 6.91002 6.94742 6.99858 7.02953 7.43611 7.48936 7.89070 8.21263 8.34721 8.67736 9.11427 9.66180 11.12992 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.006384 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.745117 B = 4384.977527 C = 5428.679419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.081 4.081 4 H 0.060 0.940 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.109 4.109 8 C 0.088 3.912 9 H 0.067 0.933 10 N -0.528 5.528 11 C 0.192 3.808 12 C -0.502 4.502 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.065 3.935 21 C -0.090 4.090 22 C -0.132 4.132 23 C -0.145 4.145 24 C -0.147 4.147 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.032 0.968 37 H -0.008 1.008 38 H 0.259 0.741 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 -9.374 -0.103 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.101 4.101 4 H 0.079 0.921 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.147 4.147 8 C -0.021 4.021 9 H 0.085 0.915 10 N -0.251 5.251 11 C 0.067 3.933 12 C -0.541 4.541 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.213 1.213 20 C -0.064 4.064 21 C -0.109 4.109 22 C -0.190 4.190 23 C -0.203 4.203 24 C -0.186 4.186 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.010 0.990 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.121 -9.349 -0.522 14.538 hybrid contribution 0.702 0.539 0.832 1.215 sum -10.420 -8.810 0.310 13.648 Atomic orbital electron populations 1.21819 0.96539 1.00947 1.01586 1.21659 0.95129 0.97102 1.02019 1.21081 0.96102 0.95515 0.97353 0.92149 1.21572 0.99364 0.99467 0.94722 1.21557 0.96427 1.00061 0.97453 1.21535 0.93740 1.01821 0.97557 1.21641 0.89189 0.97810 0.93437 0.91519 1.62261 1.06593 1.11739 1.44491 1.19733 0.95028 0.83409 0.95137 1.21261 0.91620 0.94610 1.46606 0.91894 1.24962 0.98360 0.95603 0.95671 1.69966 1.35343 0.99278 1.49375 0.86533 0.85897 0.78060 0.77483 1.19693 1.21125 1.21262 1.22060 1.01440 0.91003 0.91877 1.21099 0.99139 0.95203 0.95441 1.21657 0.98943 0.99495 0.98864 1.21817 1.01383 0.98678 0.98399 1.22266 0.94184 1.02503 0.99638 0.92591 0.93341 0.93194 0.91294 0.92565 0.92561 0.92097 0.92263 0.92634 0.91398 0.91898 0.95002 0.99046 0.93150 0.89926 0.96323 0.92328 0.93269 0.94763 0.91185 0.93420 0.93383 0.92802 0.92704 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.20 16 2 C -0.12 -1.47 4.69 -26.73 -0.13 -1.60 16 3 C -0.08 -1.12 2.66 -90.62 -0.24 -1.36 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.11 -1.50 5.21 -26.73 -0.14 -1.64 16 6 C -0.12 -1.58 5.65 -26.73 -0.15 -1.73 16 7 C -0.11 -1.82 5.22 -26.73 -0.14 -1.96 16 8 C 0.09 1.53 1.81 -67.71 -0.12 1.41 16 9 H 0.07 1.09 4.93 -51.93 -0.26 0.84 16 10 N -0.53 -10.89 3.78 -228.07 -0.86 -11.75 16 11 C 0.19 4.84 3.55 -4.98 -0.02 4.82 16 12 C -0.50 -13.88 8.23 -34.44 -0.28 -14.16 16 13 H 0.06 1.74 7.31 -52.48 -0.38 1.35 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.06 1.24 4.10 -3.82 -0.02 1.22 16 21 C -0.09 -1.43 2.97 -90.62 -0.27 -1.70 16 22 C -0.13 -2.15 9.08 37.16 0.34 -1.81 16 23 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 24 C -0.15 -2.50 3.95 -26.73 -0.11 -2.60 16 25 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.86 4.83 -51.93 -0.25 0.61 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.31 6.49 -51.93 -0.34 0.97 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.03 0.87 6.26 -51.93 -0.33 0.54 16 37 H -0.01 -0.22 6.83 -51.93 -0.35 -0.58 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 39 H 0.08 1.79 6.58 -51.93 -0.34 1.45 16 40 H 0.02 0.35 6.39 -51.92 -0.33 0.02 16 41 H 0.06 0.91 6.67 -51.93 -0.35 0.56 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 1.26 7.73 -51.93 -0.40 0.86 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.96 6.62 -51.93 -0.34 0.62 16 49 H 0.07 1.45 6.53 -51.93 -0.34 1.11 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -28.07 351.99 -9.74 -37.81 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -9.23 Total: 0.36 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -0.67 Total: -22.49 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.13 Total: -37.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.07 -9.74 -37.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.991 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds