Wall clock time and date at job start Mon Mar 30 2020 07:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 H 1.08999 * 109.47409 * 55.00053 * 3 2 1 5 5 C 1.53004 * 109.47153 * 294.99969 * 3 2 1 6 6 C 1.53003 * 109.46827 * 299.99972 * 5 3 2 7 7 C 1.52995 * 109.47228 * 299.99698 * 6 5 3 8 8 C 1.53004 * 109.46970 * 60.00389 * 7 6 5 9 9 H 1.08994 * 109.47173 * 60.00021 * 8 7 6 10 10 N 1.46903 * 109.46777 * 180.02562 * 8 7 6 11 11 C 1.46901 * 111.00303 * 69.48099 * 10 8 7 12 12 C 1.50697 * 109.47449 * 189.99820 * 11 10 8 13 13 H 1.08008 * 119.99590 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00395 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00122 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47232 * 119.99760 * 16 14 12 19 19 H 1.48502 * 109.46867 * 239.99609 * 16 14 12 20 20 C 1.46900 * 110.99737 * 193.43216 * 10 8 7 21 21 C 1.53001 * 109.47229 * 75.85967 * 20 10 8 22 22 C 1.53002 * 109.46825 * 64.42046 * 21 20 10 23 23 C 1.52997 * 109.47141 * 184.41526 * 21 20 10 24 24 C 1.53002 * 109.47543 * 174.99963 * 3 2 1 25 25 H 1.08995 * 109.47207 * 60.00334 * 1 2 3 26 26 H 1.09008 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47219 * 299.99535 * 1 2 3 28 28 H 1.09002 * 109.47458 * 239.99991 * 2 1 3 29 29 H 1.09003 * 109.47343 * 119.99951 * 2 1 3 30 30 H 1.09001 * 109.47094 * 59.99789 * 5 3 2 31 31 H 1.08993 * 109.47530 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47290 * 60.00265 * 6 5 3 33 33 H 1.09002 * 109.47317 * 179.97438 * 6 5 3 34 34 H 1.08993 * 109.47311 * 299.99867 * 7 6 5 35 35 H 1.09001 * 109.47552 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46833 * 309.99956 * 11 10 8 37 37 H 1.08996 * 109.47166 * 69.99414 * 11 10 8 38 38 H 0.96998 * 120.00709 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47206 * 195.86377 * 20 10 8 40 40 H 1.09008 * 109.46958 * 315.85906 * 20 10 8 41 41 H 1.08995 * 109.47515 * 304.41802 * 21 20 10 42 42 H 1.08995 * 109.47274 * 59.99607 * 22 21 20 43 43 H 1.08997 * 109.47098 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46912 * 299.99585 * 22 21 20 45 45 H 1.08998 * 109.47226 * 59.99973 * 23 21 20 46 46 H 1.08999 * 109.47507 * 180.02562 * 23 21 20 47 47 H 1.09000 * 109.47539 * 300.00239 * 23 21 20 48 48 H 1.09003 * 109.46843 * 300.00556 * 24 3 2 49 49 H 1.08993 * 109.47532 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.2453 1.3698 -2.4890 7 6 3.7701 1.3717 -2.3633 8 6 4.1749 0.6877 -1.0559 9 1 3.8116 -0.3400 -1.0559 10 7 5.6389 0.6900 -0.9349 11 6 6.1461 2.0495 -0.7057 12 6 7.6478 2.0533 -0.8312 13 1 8.1730 1.1372 -1.0582 14 6 8.3513 3.2261 -0.6564 15 7 7.7117 4.3417 -0.3805 16 14 10.2129 3.2306 -0.8113 17 1 10.6869 1.8584 -1.1239 18 1 10.6166 4.1546 -1.9015 19 1 10.8150 3.6823 0.4688 20 6 6.0808 -0.2228 0.1278 21 6 5.9771 -1.6676 -0.3650 22 6 6.9479 -1.8805 -1.5283 23 6 6.3318 -2.6225 0.7765 24 6 3.5648 1.4444 0.1257 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5489 2.1252 -1.3970 31 1 1.9989 3.1540 -1.3076 32 1 1.8820 0.3422 -2.4890 33 1 1.9567 1.8569 -3.4204 34 1 4.1334 2.3993 -2.3633 35 1 4.2048 0.8323 -3.2048 36 1 5.7179 2.7265 -1.4450 37 1 5.8643 2.3786 0.2945 38 1 8.2066 5.1667 -0.2571 39 1 7.1154 -0.0017 0.3899 40 1 5.4477 -0.0920 1.0056 41 1 4.9590 -1.8648 -0.7007 42 1 7.9660 -1.6832 -1.1926 43 1 6.8738 -2.9095 -1.8797 44 1 6.6952 -1.2001 -2.3415 45 1 5.6402 -2.4709 1.6052 46 1 6.2583 -3.6518 0.4253 47 1 7.3498 -2.4254 1.1122 48 1 3.8532 0.9570 1.0571 49 1 3.9282 2.4720 0.1253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071147922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:17 Heat of formation + Delta-G solvation = -52.867582 kcal Electronic energy + Delta-G solvation = -22528.109148 eV Core-core repulsion = 19680.779147 eV Total energy + Delta-G solvation = -2847.330001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92691 -38.12467 -35.63753 -34.56501 -33.36189 -30.87495 -29.96430 -28.71783 -27.84465 -26.14148 -24.37572 -24.21497 -22.99961 -21.70611 -20.41430 -19.18169 -18.30357 -17.08184 -16.62706 -16.21941 -15.81570 -15.56810 -15.31919 -14.95442 -14.86032 -14.47262 -14.15446 -13.87492 -13.84731 -13.37263 -13.18387 -13.10957 -12.95255 -12.85791 -12.79146 -12.67381 -12.52291 -12.32328 -12.27339 -11.91743 -11.79256 -11.67868 -11.55516 -11.44230 -11.34314 -11.12904 -11.03672 -10.82425 -10.72842 -10.53467 -8.77374 -8.17558 -6.26004 1.37980 1.38800 1.52036 2.40294 3.14385 3.34636 3.74812 3.85165 3.95245 4.13292 4.20811 4.26939 4.33764 4.39470 4.43956 4.49787 4.52681 4.62641 4.65833 4.76335 4.83290 4.86959 4.91684 4.92600 4.96626 4.98090 5.08438 5.12813 5.16774 5.18501 5.21877 5.24229 5.29619 5.31513 5.34076 5.36527 5.44855 5.47140 5.53626 5.58653 5.60397 5.67070 5.69957 5.71561 6.15084 6.49881 6.80885 6.93392 7.43221 8.93198 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.006384 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.745117 B = 4384.977527 C = 5428.679419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.077 4.077 4 H 0.063 0.937 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.107 4.107 8 C 0.090 3.910 9 H 0.089 0.911 10 N -0.532 5.532 11 C 0.216 3.784 12 C -0.515 4.515 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.962 3.038 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.067 3.933 21 C -0.082 4.082 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.139 4.139 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.003 0.997 37 H -0.041 1.041 38 H 0.262 0.738 39 H 0.051 0.949 40 H 0.017 0.983 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.045 0.955 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -11.810 -0.516 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.096 4.096 4 H 0.081 0.919 5 C -0.150 4.150 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.018 4.018 9 H 0.107 0.893 10 N -0.254 5.254 11 C 0.089 3.911 12 C -0.554 4.554 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.577 5.577 16 Si 0.787 3.213 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.061 4.061 21 C -0.101 4.101 22 C -0.185 4.185 23 C -0.198 4.198 24 C -0.178 4.178 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.021 0.979 37 H -0.023 1.023 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.309 -11.805 -0.936 17.080 hybrid contribution 1.052 1.308 0.977 1.942 sum -11.257 -10.497 0.041 15.392 Atomic orbital electron populations 1.21786 0.94576 1.02053 1.02074 1.21605 0.96768 0.95065 1.01965 1.21058 0.93134 0.97458 0.97947 0.91893 1.21573 1.00999 0.98174 0.94205 1.21516 0.93317 1.01582 0.98192 1.21508 0.96622 0.99321 0.97004 1.21744 0.87049 0.99081 0.93945 0.89270 1.62222 1.09007 1.09239 1.44980 1.19263 0.94051 0.85540 0.92210 1.21562 0.92888 0.94584 1.46317 0.92172 1.25844 1.03401 0.95155 0.95222 1.70100 1.37346 0.99954 1.50328 0.85447 0.79815 0.78415 0.77647 1.18771 1.20518 1.20607 1.22059 0.99362 0.92989 0.91683 1.21049 0.99814 0.92959 0.96252 1.21605 0.98102 1.00697 0.98146 1.21773 1.01153 0.99219 0.97619 1.22142 0.97070 0.99619 0.98991 0.91892 0.91960 0.92960 0.91189 0.92764 0.89673 0.94167 0.90072 0.91242 0.95089 0.92134 0.97879 1.02345 0.92960 0.93067 0.96463 0.91097 0.94647 0.91801 0.93440 0.92670 0.90904 0.93457 0.93620 0.95112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.67 71.98 0.70 -1.80 16 2 C -0.12 -2.52 4.69 30.59 0.14 -2.37 16 3 C -0.08 -2.05 2.66 -10.79 -0.03 -2.08 16 4 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 5 C -0.11 -2.83 5.21 30.60 0.16 -2.67 16 6 C -0.11 -2.74 5.65 30.59 0.17 -2.56 16 7 C -0.11 -3.64 5.22 30.59 0.16 -3.48 16 8 C 0.09 3.19 1.81 44.92 0.08 3.27 16 9 H 0.09 2.79 4.93 -2.39 -0.01 2.77 16 10 N -0.53 -22.88 3.78 -875.49 -3.31 -26.18 16 11 C 0.22 11.64 3.55 85.56 0.30 11.94 16 12 C -0.52 -29.74 8.23 25.60 0.21 -29.53 16 13 H 0.06 3.44 7.31 -2.91 -0.02 3.42 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.94 -57.75 13.29 21.44 0.28 -57.47 16 16 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 17 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 C 0.07 2.64 4.10 86.30 0.35 2.99 16 21 C -0.08 -2.49 2.97 -10.79 -0.03 -2.52 16 22 C -0.13 -4.01 9.08 71.98 0.65 -3.35 16 23 C -0.14 -3.49 9.19 71.98 0.66 -2.83 16 24 C -0.14 -4.93 3.95 30.60 0.12 -4.81 16 25 H 0.06 0.99 6.56 -2.39 -0.02 0.97 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.50 4.83 -2.39 -0.01 1.49 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.70 6.57 -2.39 -0.02 1.69 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.75 6.32 -2.39 -0.02 1.73 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.27 6.49 -2.39 -0.02 1.25 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.00 0.19 6.26 -2.38 -0.01 0.17 16 37 H -0.04 -2.44 6.83 -2.39 -0.02 -2.46 16 38 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.05 2.31 6.58 -2.39 -0.02 2.30 16 40 H 0.02 0.67 6.39 -2.38 -0.02 0.66 16 41 H 0.07 2.01 6.67 -2.39 -0.02 1.99 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.05 1.68 7.73 -2.39 -0.02 1.66 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.05 1.66 6.62 -2.39 -0.02 1.65 16 49 H 0.03 1.33 6.53 -2.39 -0.02 1.31 16 Total: -1.00 -64.07 351.99 4.00 -60.07 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.88 Total: 15.35 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 4.12 Total: -39.28 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -3.02 Total: -83.65 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -64.07 4.00 -60.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.198 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds