Wall clock time and date at job start Mon Mar 30 2020 07:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46720 * 2 1 4 4 H 1.09007 * 109.47102 * 304.99911 * 3 2 1 5 5 C 1.52997 * 109.47327 * 64.99878 * 3 2 1 6 6 C 1.52998 * 109.47327 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47326 * 299.99918 * 6 5 3 8 8 C 1.53006 * 109.46919 * 59.99749 * 7 6 5 9 9 H 1.09005 * 109.46419 * 60.00179 * 8 7 6 10 10 N 1.46893 * 109.47130 * 180.02562 * 8 7 6 11 11 C 1.46908 * 110.99846 * 178.36858 * 10 8 7 12 12 C 1.50699 * 109.46775 * 200.70005 * 11 10 8 13 13 H 1.07999 * 120.00677 * 1.16967 * 12 11 10 14 14 C 1.37882 * 119.99593 * 181.16440 * 12 11 10 15 15 N 1.31516 * 120.00079 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46923 * 90.00395 * 16 14 12 18 18 H 1.48496 * 109.46928 * 210.00440 * 16 14 12 19 19 H 1.48504 * 109.46891 * 330.00091 * 16 14 12 20 20 C 1.46896 * 111.00150 * 302.32319 * 10 8 7 21 21 C 1.52999 * 109.47157 * 158.09069 * 20 10 8 22 22 C 1.52997 * 109.47327 * 176.74421 * 21 20 10 23 23 C 1.53001 * 109.47530 * 296.74865 * 21 20 10 24 24 C 1.52998 * 109.47327 * 300.00250 * 8 7 6 25 25 H 1.08991 * 109.47226 * 299.99849 * 1 2 3 26 26 H 1.08993 * 109.47133 * 60.00314 * 1 2 3 27 27 H 1.09004 * 109.46384 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47286 * 240.00118 * 2 1 3 29 29 H 1.08993 * 109.47133 * 119.99686 * 2 1 3 30 30 H 1.08995 * 109.47589 * 300.00239 * 5 3 2 31 31 H 1.09007 * 109.47003 * 59.99971 * 5 3 2 32 32 H 1.08995 * 109.47257 * 60.00467 * 6 5 3 33 33 H 1.09000 * 109.47289 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.47429 * 300.00546 * 7 6 5 35 35 H 1.08997 * 109.47644 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.47392 * 320.70504 * 11 10 8 37 37 H 1.09001 * 109.47003 * 80.70219 * 11 10 8 38 38 H 0.97002 * 119.99834 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.47456 * 278.08838 * 20 10 8 40 40 H 1.08998 * 109.47410 * 38.09068 * 20 10 8 41 41 H 1.09000 * 109.46946 * 56.74817 * 21 20 10 42 42 H 1.09000 * 109.46784 * 60.00297 * 22 21 20 43 43 H 1.09003 * 109.47699 * 179.97438 * 22 21 20 44 44 H 1.08996 * 109.47724 * 300.00081 * 22 21 20 45 45 H 1.09000 * 109.46880 * 63.01847 * 23 21 20 46 46 H 1.08993 * 109.47776 * 183.02686 * 23 21 20 47 47 H 1.09006 * 109.46594 * 303.02946 * 23 21 20 48 48 H 1.09000 * 109.47289 * 179.97438 * 24 8 7 49 49 H 1.08997 * 109.47047 * 299.99954 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1456 3.5689 1.3076 7 6 3.6705 3.5703 1.1822 8 6 4.0753 2.8862 -0.1252 9 1 3.6410 3.4256 -0.9670 10 7 5.5393 2.8870 -0.2453 11 6 5.9672 2.2025 -1.4727 12 6 7.4045 1.7718 -1.3326 13 1 7.9403 1.9684 -0.4158 14 6 8.0355 1.1266 -2.3751 15 7 7.3832 0.8875 -3.4917 16 14 9.8170 0.5920 -2.2013 17 1 9.8688 -0.7841 -1.6456 18 1 10.4722 0.6129 -3.5337 19 1 10.5259 1.5225 -1.2864 20 6 6.0711 4.2553 -0.1929 21 6 7.5424 4.2150 0.2249 22 6 8.1184 5.6322 0.2009 23 6 7.6556 3.6423 1.6391 24 6 3.5649 1.4439 -0.1254 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5489 2.1252 1.3969 31 1 2.0698 1.5875 2.1492 32 1 1.7113 4.1082 0.4658 33 1 1.8576 4.0561 2.2391 34 1 4.1048 3.0310 2.0240 35 1 4.0341 4.5978 1.1819 36 1 5.3399 1.3267 -1.6379 37 1 5.8724 2.8822 -2.3196 38 1 7.8273 0.4340 -4.2252 39 1 5.9854 4.7165 -1.1769 40 1 5.5034 4.8383 0.5323 41 1 8.0997 3.5847 -0.4680 42 1 7.5611 6.2626 0.8939 43 1 9.1665 5.6037 0.4990 44 1 8.0379 6.0403 -0.8065 45 1 7.2947 2.6138 1.6445 46 1 8.6978 3.6635 1.9575 47 1 7.0546 4.2418 2.3230 48 1 3.8529 0.9567 -1.0570 49 1 3.9991 0.9047 0.7164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071147925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:19 Heat of formation + Delta-G solvation = -32.765286 kcal Electronic energy + Delta-G solvation = -22260.978927 eV Core-core repulsion = 19414.520627 eV Total energy + Delta-G solvation = -2846.458300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.15069 -36.78453 -34.01785 -33.13090 -32.15968 -29.56986 -28.59806 -26.77214 -26.42693 -24.71830 -23.05317 -22.52182 -20.82089 -19.76910 -19.27316 -18.91304 -16.38481 -15.50646 -14.83908 -14.70231 -14.44725 -13.98904 -13.84914 -13.64582 -13.38790 -13.08647 -12.94744 -12.51989 -12.23178 -12.14460 -11.95532 -11.68181 -11.43881 -11.38499 -11.17408 -11.07255 -10.89838 -10.78449 -10.59823 -10.52130 -10.34842 -10.29726 -10.13243 -10.07377 -10.03741 -9.65170 -9.42203 -9.19199 -8.84536 -8.28113 -7.10682 -5.96417 -3.94551 3.34495 3.40967 3.44011 4.45413 4.74425 4.92978 4.99352 5.25888 5.28305 5.35533 5.39513 5.48750 5.62339 5.68737 5.72383 5.79002 5.85277 5.86458 5.91990 5.94299 5.96203 6.06227 6.13011 6.15663 6.20521 6.22740 6.29109 6.33254 6.42307 6.45771 6.46888 6.52133 6.58603 6.62166 6.65572 6.75067 6.82809 6.88534 6.95717 7.19454 7.36791 7.44625 7.49137 7.94385 8.23820 8.35242 8.66647 9.12228 9.67075 11.14022 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.006296 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.893414 B = 4446.067077 C = 5765.398924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.064 0.936 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.113 4.113 8 C 0.089 3.911 9 H 0.022 0.978 10 N -0.530 5.530 11 C 0.187 3.813 12 C -0.500 4.500 13 H 0.076 0.924 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.273 1.273 20 C 0.073 3.927 21 C -0.112 4.112 22 C -0.143 4.143 23 C -0.127 4.127 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.035 0.965 37 H -0.011 1.011 38 H 0.259 0.741 39 H 0.020 0.980 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 4.023 8.700 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.082 0.918 5 C -0.149 4.149 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.020 4.020 9 H 0.040 0.960 10 N -0.254 5.254 11 C 0.062 3.938 12 C -0.538 4.538 13 H 0.094 0.906 14 C -0.148 4.148 15 N -0.540 5.540 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.198 1.198 20 C -0.056 4.056 21 C -0.130 4.130 22 C -0.201 4.201 23 C -0.184 4.184 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.007 0.993 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.091 0.909 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.542 3.682 8.916 13.568 hybrid contribution 0.660 0.161 -0.835 1.076 sum -8.882 3.843 8.081 12.608 Atomic orbital electron populations 1.21817 0.96465 1.01038 1.01558 1.21554 0.95190 0.96828 1.02127 1.21183 0.96457 0.95320 0.97510 0.91800 1.21613 0.99699 0.95754 0.97844 1.21520 0.96385 0.96697 1.00883 1.21683 0.94421 1.00304 0.98642 1.21445 0.89832 0.95464 0.95217 0.95961 1.62117 1.06202 1.15345 1.41718 1.19894 0.96375 0.93429 0.84126 1.21400 0.96432 1.35748 1.00263 0.90612 1.25000 0.97985 0.96347 0.95441 1.69964 1.36723 1.42678 1.04624 0.86623 0.85264 0.79128 0.77194 1.20770 1.21504 1.19769 1.22027 0.95388 0.90070 0.98071 1.21546 0.96797 0.95784 0.98882 1.21827 0.99971 0.97741 1.00544 1.21612 0.98973 1.02115 0.95708 1.21687 0.92904 0.96599 1.03171 0.92769 0.93010 0.93249 0.91897 0.92120 0.92534 0.92143 0.92570 0.92582 0.91439 0.92306 0.94748 0.99300 0.93143 0.96194 0.92862 0.86670 0.94099 0.93447 0.93446 0.91205 0.94758 0.94799 0.90926 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.67 37.16 0.36 -1.23 16 2 C -0.12 -1.49 5.40 -26.73 -0.14 -1.64 16 3 C -0.09 -1.17 2.19 -90.62 -0.20 -1.37 16 4 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.11 -1.35 4.96 -26.73 -0.13 -1.49 16 6 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 7 C -0.11 -1.68 4.99 -26.73 -0.13 -1.81 16 8 C 0.09 1.59 1.95 -67.71 -0.13 1.46 16 9 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 10 N -0.53 -11.01 3.72 -228.08 -0.85 -11.86 16 11 C 0.19 4.72 4.62 -4.97 -0.02 4.70 16 12 C -0.50 -13.48 7.39 -34.44 -0.25 -13.74 16 13 H 0.08 2.00 5.11 -52.49 -0.27 1.73 16 14 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 15 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.07 1.41 4.27 -3.83 -0.02 1.39 16 21 C -0.11 -2.13 2.44 -90.62 -0.22 -2.35 16 22 C -0.14 -2.30 9.19 37.16 0.34 -1.96 16 23 C -0.13 -2.24 8.67 37.16 0.32 -1.92 16 24 C -0.11 -1.81 4.28 -26.73 -0.11 -1.93 16 25 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.87 5.96 -51.93 -0.31 0.56 16 36 H 0.03 0.92 5.43 -51.93 -0.28 0.64 16 37 H -0.01 -0.30 7.68 -51.93 -0.40 -0.70 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.02 0.41 7.67 -51.93 -0.40 0.02 16 40 H 0.05 0.92 5.38 -51.93 -0.28 0.64 16 41 H 0.12 2.62 4.68 -51.93 -0.24 2.38 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.37 7.44 -51.93 -0.39 0.98 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 1.43 5.99 -51.93 -0.31 1.12 16 49 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -27.69 356.33 -9.83 -37.51 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -9.46 Total: 0.37 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -0.60 Total: -22.11 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.11 Total: -37.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.69 -9.83 -37.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.749 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds