Wall clock time and date at job start Mon Mar 30 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 H 1.08999 * 109.47079 * 181.76807 * 3 2 1 5 5 C 1.50702 * 109.47199 * 61.76233 * 3 2 1 6 6 H 1.07995 * 120.00305 * 245.38817 * 5 3 2 7 7 C 1.37875 * 119.99861 * 65.39141 * 5 3 2 8 8 N 1.31511 * 120.00060 * 193.68062 * 7 5 3 9 9 Si 1.86806 * 119.99923 * 13.68033 * 7 5 3 10 10 H 1.48498 * 109.46995 * 85.11429 * 9 7 5 11 11 H 1.48499 * 109.46977 * 205.11299 * 9 7 5 12 12 H 1.48494 * 109.47051 * 325.11450 * 9 7 5 13 13 N 1.46900 * 109.46930 * 301.76406 * 3 2 1 14 14 C 1.47996 * 111.00182 * 307.44302 * 13 3 2 15 15 C 1.50447 * 112.82761 * 191.34674 * 14 13 3 16 16 C 1.54300 * 108.49977 * 93.72666 * 15 14 13 17 17 C 1.45882 * 112.18680 * 281.46044 * 16 15 14 18 18 H 1.08994 * 108.94272 * 300.51541 * 17 16 15 19 19 C 1.53008 * 108.93980 * 181.81753 * 17 16 15 20 20 C 1.53004 * 109.46714 * 55.88620 * 19 17 16 21 21 C 1.52995 * 109.46901 * 295.88789 * 19 17 16 22 22 C 1.52997 * 109.46975 * 175.88337 * 19 17 16 23 23 C 1.54310 * 112.18259 * 61.12462 * 17 16 15 24 24 C 1.48000 * 111.00053 * 178.71852 * 13 3 2 25 25 H 1.08993 * 109.47078 * 183.91908 * 1 2 3 26 26 H 1.09000 * 109.47053 * 303.91899 * 1 2 3 27 27 H 1.09004 * 109.47107 * 63.91597 * 1 2 3 28 28 H 1.08996 * 109.46816 * 239.99811 * 2 1 3 29 29 H 1.09000 * 109.46869 * 119.99144 * 2 1 3 30 30 H 0.97005 * 120.00255 * 179.97438 * 8 7 5 31 31 H 1.08997 * 108.81199 * 70.47976 * 14 13 3 32 32 H 1.08997 * 108.81526 * 312.20787 * 14 13 3 33 33 H 1.09004 * 109.62822 * 334.02212 * 15 14 13 34 34 H 1.09005 * 109.79635 * 213.53009 * 15 14 13 35 35 H 1.09002 * 108.93826 * 160.76795 * 16 15 14 36 36 H 1.08995 * 108.94133 * 42.15865 * 16 15 14 37 37 H 1.09003 * 109.46842 * 299.99696 * 20 19 17 38 38 H 1.08994 * 109.47235 * 60.00318 * 20 19 17 39 39 H 1.09001 * 109.46856 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.46642 * 179.97438 * 21 19 17 41 41 H 1.08997 * 109.47378 * 299.99731 * 21 19 17 42 42 H 1.08997 * 109.47335 * 60.00182 * 21 19 17 43 43 H 1.08996 * 109.47253 * 306.36932 * 22 19 17 44 44 H 1.09000 * 109.47035 * 66.37133 * 22 19 17 45 45 H 1.09001 * 109.46756 * 186.36728 * 22 19 17 46 46 H 1.08998 * 109.63260 * 41.16172 * 23 17 16 47 47 H 1.08998 * 109.63376 * 161.76080 * 23 17 16 48 48 H 1.08998 * 108.81365 * 205.69671 * 24 13 3 49 49 H 1.08996 * 108.81186 * 324.08895 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0317 5 6 1.5737 2.1402 1.2517 6 1 0.8807 2.9657 1.1836 7 6 2.0319 1.7248 2.4840 8 7 1.4362 2.1388 3.5809 9 14 3.4989 0.5736 2.5954 10 1 4.7541 1.3663 2.5573 11 1 3.4338 -0.1894 3.8677 12 1 3.4750 -0.3709 1.4498 13 7 1.5158 2.1472 -1.1776 14 6 1.8030 1.3932 -2.4183 15 6 1.5321 2.1931 -3.6633 16 6 2.8454 2.8730 -4.1037 17 6 3.1445 4.0598 -3.3099 18 1 2.3269 4.7726 -3.4173 19 6 4.4315 4.6981 -3.8364 20 6 4.2785 4.9978 -5.3290 21 6 5.6013 3.7345 -3.6270 22 6 4.7015 6.0002 -3.0798 23 6 3.3251 3.7295 -1.8134 24 6 1.9644 3.5575 -1.1950 25 1 -0.3633 -1.0252 0.0702 26 1 -0.3633 0.5735 0.8528 27 1 -0.3633 0.4519 -0.9230 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7583 1.8462 4.4478 31 1 1.1843 0.4959 -2.4354 32 1 2.8512 1.0945 -2.4135 33 1 0.7788 2.9526 -3.4539 34 1 1.1773 1.5340 -4.4557 35 1 2.7607 3.1605 -5.1517 36 1 3.6645 2.1617 -3.9989 37 1 4.0861 4.0701 -5.8680 38 1 3.4451 5.6843 -5.4782 39 1 5.1952 5.4530 -5.7040 40 1 6.5181 4.1891 -4.0025 41 1 5.7103 3.5210 -2.5637 42 1 5.4089 2.8069 -4.1660 43 1 3.8219 6.6416 -3.1349 44 1 4.9223 5.7751 -2.0364 45 1 5.5528 6.5116 -3.5292 46 1 3.8945 2.8060 -1.7084 47 1 3.8515 4.5460 -1.3191 48 1 1.2441 4.1485 -1.7606 49 1 1.9961 3.9289 -0.1708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079342240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:05 Heat of formation + Delta-G solvation = -13.884142 kcal Electronic energy + Delta-G solvation = -22868.884487 eV Core-core repulsion = 20023.244935 eV Total energy + Delta-G solvation = -2845.639552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.99303 -37.19260 -34.23486 -32.02250 -31.81815 -30.32314 -27.92685 -27.31993 -26.84352 -25.17657 -24.15833 -22.78211 -20.89535 -20.19339 -18.64082 -18.08026 -16.33664 -15.92291 -15.31446 -14.63825 -14.33721 -14.20637 -13.93307 -13.80158 -13.28767 -13.01658 -12.91101 -12.54961 -12.43284 -12.14223 -12.02968 -11.69266 -11.66539 -11.48888 -11.36164 -11.23453 -11.02235 -10.91108 -10.79319 -10.48309 -10.44477 -10.11818 -10.10286 -10.02005 -9.83894 -9.82247 -9.43541 -9.19458 -8.88109 -8.39763 -7.05932 -6.04432 -3.96777 3.29249 3.38250 3.40725 4.45343 4.65013 4.80675 4.86389 4.88626 5.13035 5.27626 5.31524 5.40391 5.55131 5.62043 5.64976 5.74642 5.77937 5.81885 5.86957 5.90328 5.98644 6.03647 6.04967 6.14452 6.16202 6.21810 6.25645 6.28752 6.34640 6.39002 6.43161 6.48814 6.54484 6.58714 6.63653 6.70138 6.77768 6.87048 7.00238 7.08758 7.18573 7.29102 7.56638 7.79037 8.10366 8.27974 8.75006 9.06925 9.62012 11.08464 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.006225 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.115885 B = 4497.009708 C = 5043.902138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.194 3.806 4 H -0.012 1.012 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.529 5.529 14 C 0.061 3.939 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.071 4.071 18 H 0.065 0.935 19 C -0.067 4.067 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.140 4.140 24 C 0.063 3.937 25 H 0.019 0.981 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 2.892 -15.862 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.087 3.913 4 H 0.005 0.995 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.683 3.317 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.178 1.178 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.090 4.090 18 H 0.083 0.917 19 C -0.067 4.067 20 C -0.200 4.200 21 C -0.200 4.200 22 C -0.199 4.199 23 C -0.179 4.179 24 C -0.065 4.065 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.680 2.890 -15.623 16.563 hybrid contribution 1.820 -0.715 0.167 1.963 sum 6.500 2.175 -15.456 16.907 Atomic orbital electron populations 1.21496 0.95742 0.98164 1.02818 1.21996 0.97083 0.98042 0.98804 1.19557 0.91728 0.90850 0.89189 0.99464 1.20858 1.27335 1.17382 0.87966 0.90150 1.24837 0.96360 0.95716 0.95740 1.69946 1.39515 1.46047 0.97790 0.87394 0.84367 0.82079 0.77821 1.20792 1.21593 1.17791 1.61773 1.61211 1.01148 1.01279 1.21725 0.98142 0.96874 0.89928 1.21410 0.97500 0.99781 0.96920 1.20782 0.97819 0.97673 0.99209 1.20193 0.96124 0.97082 0.95567 0.91673 1.20625 0.95737 0.95429 0.94940 1.21958 1.01116 1.01314 0.95603 1.21941 0.97077 0.98920 1.02093 1.21924 1.00993 0.96464 1.00519 1.22058 1.00040 1.01526 0.94282 1.21800 0.92517 0.90015 1.02174 0.96222 0.91082 0.93242 0.95554 0.92610 0.92817 0.91821 0.96323 0.90948 0.92236 0.92389 0.92345 0.92400 0.92877 0.93244 0.93390 0.92276 0.92705 0.92750 0.92086 0.93335 0.92178 0.91626 0.92963 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.39 37.16 0.35 -2.27 16 2 C -0.12 -2.67 4.54 -26.73 -0.12 -2.79 16 3 C 0.19 4.49 1.28 -68.86 -0.09 4.40 16 4 H -0.01 -0.29 6.49 -51.93 -0.34 -0.63 16 5 C -0.50 -13.39 6.62 -34.44 -0.23 -13.61 16 6 H 0.08 2.38 7.34 -52.49 -0.39 2.00 16 7 C 0.08 2.11 5.37 -17.82 -0.10 2.01 16 8 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 9 Si 0.86 21.11 25.90 -169.99 -4.40 16.71 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.93 5.29 56.52 0.30 -5.63 16 13 N -0.53 -10.60 3.85 -229.31 -0.88 -11.48 16 14 C 0.06 1.04 3.85 -4.49 -0.02 1.02 16 15 C -0.12 -1.65 5.63 -27.33 -0.15 -1.80 16 16 C -0.12 -1.48 4.00 -29.42 -0.12 -1.60 16 17 C -0.07 -0.92 1.13 -93.30 -0.11 -1.03 16 18 H 0.06 0.87 7.51 -51.93 -0.39 0.48 16 19 C -0.07 -0.76 0.56 -154.51 -0.09 -0.85 16 20 C -0.14 -1.41 7.95 37.16 0.30 -1.11 16 21 C -0.14 -1.65 7.83 37.15 0.29 -1.35 16 22 C -0.14 -1.57 8.04 37.16 0.30 -1.27 16 23 C -0.14 -2.22 3.84 -27.32 -0.10 -2.33 16 24 C 0.06 1.17 4.93 -4.49 -0.02 1.15 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 1.69 7.14 -51.93 -0.37 1.32 16 27 H 0.05 0.99 6.86 -51.93 -0.36 0.63 16 28 H 0.03 0.52 6.66 -51.93 -0.35 0.18 16 29 H 0.06 1.30 4.65 -51.93 -0.24 1.06 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.06 1.10 6.12 -51.93 -0.32 0.78 16 32 H 0.02 0.33 6.48 -51.93 -0.34 -0.01 16 33 H 0.07 1.07 7.08 -51.93 -0.37 0.70 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 36 H 0.06 0.77 5.73 -51.93 -0.30 0.47 16 37 H 0.06 0.56 6.28 -51.93 -0.33 0.23 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.75 6.83 -51.93 -0.35 0.40 16 42 H 0.05 0.62 6.50 -51.93 -0.34 0.28 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.73 6.39 -51.93 -0.33 0.40 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 1.05 6.03 -51.93 -0.31 0.74 16 47 H 0.07 1.02 5.85 -51.93 -0.30 0.71 16 48 H 0.05 0.91 6.58 -51.93 -0.34 0.57 16 49 H 0.09 1.92 6.07 -51.93 -0.32 1.61 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -27.89 332.03 -8.29 -36.18 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.88 Total: 1.05 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 0.09 Total: -21.44 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.11 Total: -37.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.40 Total: 16.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.89 -8.29 -36.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079342240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.297 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds