Wall clock time and date at job start Mon Mar 30 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 H 1.08999 * 109.47079 * 181.76807 * 3 2 1 5 5 C 1.50702 * 109.47199 * 61.76233 * 3 2 1 6 6 H 1.07995 * 120.00305 * 245.38817 * 5 3 2 7 7 C 1.37875 * 119.99861 * 65.39141 * 5 3 2 8 8 N 1.31511 * 120.00060 * 193.68062 * 7 5 3 9 9 Si 1.86806 * 119.99923 * 13.68033 * 7 5 3 10 10 H 1.48498 * 109.46995 * 85.11429 * 9 7 5 11 11 H 1.48499 * 109.46977 * 205.11299 * 9 7 5 12 12 H 1.48494 * 109.47051 * 325.11450 * 9 7 5 13 13 N 1.46900 * 109.46930 * 301.76406 * 3 2 1 14 14 C 1.47996 * 111.00182 * 307.44302 * 13 3 2 15 15 C 1.50447 * 112.82761 * 191.34674 * 14 13 3 16 16 C 1.54300 * 108.49977 * 93.72666 * 15 14 13 17 17 C 1.45882 * 112.18680 * 281.46044 * 16 15 14 18 18 H 1.08994 * 108.94272 * 300.51541 * 17 16 15 19 19 C 1.53008 * 108.93980 * 181.81753 * 17 16 15 20 20 C 1.53004 * 109.46714 * 55.88620 * 19 17 16 21 21 C 1.52995 * 109.46901 * 295.88789 * 19 17 16 22 22 C 1.52997 * 109.46975 * 175.88337 * 19 17 16 23 23 C 1.54310 * 112.18259 * 61.12462 * 17 16 15 24 24 C 1.48000 * 111.00053 * 178.71852 * 13 3 2 25 25 H 1.08993 * 109.47078 * 183.91908 * 1 2 3 26 26 H 1.09000 * 109.47053 * 303.91899 * 1 2 3 27 27 H 1.09004 * 109.47107 * 63.91597 * 1 2 3 28 28 H 1.08996 * 109.46816 * 239.99811 * 2 1 3 29 29 H 1.09000 * 109.46869 * 119.99144 * 2 1 3 30 30 H 0.97005 * 120.00255 * 179.97438 * 8 7 5 31 31 H 1.08997 * 108.81199 * 70.47976 * 14 13 3 32 32 H 1.08997 * 108.81526 * 312.20787 * 14 13 3 33 33 H 1.09004 * 109.62822 * 334.02212 * 15 14 13 34 34 H 1.09005 * 109.79635 * 213.53009 * 15 14 13 35 35 H 1.09002 * 108.93826 * 160.76795 * 16 15 14 36 36 H 1.08995 * 108.94133 * 42.15865 * 16 15 14 37 37 H 1.09003 * 109.46842 * 299.99696 * 20 19 17 38 38 H 1.08994 * 109.47235 * 60.00318 * 20 19 17 39 39 H 1.09001 * 109.46856 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.46642 * 179.97438 * 21 19 17 41 41 H 1.08997 * 109.47378 * 299.99731 * 21 19 17 42 42 H 1.08997 * 109.47335 * 60.00182 * 21 19 17 43 43 H 1.08996 * 109.47253 * 306.36932 * 22 19 17 44 44 H 1.09000 * 109.47035 * 66.37133 * 22 19 17 45 45 H 1.09001 * 109.46756 * 186.36728 * 22 19 17 46 46 H 1.08998 * 109.63260 * 41.16172 * 23 17 16 47 47 H 1.08998 * 109.63376 * 161.76080 * 23 17 16 48 48 H 1.08998 * 108.81365 * 205.69671 * 24 13 3 49 49 H 1.08996 * 108.81186 * 324.08895 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0317 5 6 1.5737 2.1402 1.2517 6 1 0.8807 2.9657 1.1836 7 6 2.0319 1.7248 2.4840 8 7 1.4362 2.1388 3.5809 9 14 3.4989 0.5736 2.5954 10 1 4.7541 1.3663 2.5573 11 1 3.4338 -0.1894 3.8677 12 1 3.4750 -0.3709 1.4498 13 7 1.5158 2.1472 -1.1776 14 6 1.8030 1.3932 -2.4183 15 6 1.5321 2.1931 -3.6633 16 6 2.8454 2.8730 -4.1037 17 6 3.1445 4.0598 -3.3099 18 1 2.3269 4.7726 -3.4173 19 6 4.4315 4.6981 -3.8364 20 6 4.2785 4.9978 -5.3290 21 6 5.6013 3.7345 -3.6270 22 6 4.7015 6.0002 -3.0798 23 6 3.3251 3.7295 -1.8134 24 6 1.9644 3.5575 -1.1950 25 1 -0.3633 -1.0252 0.0702 26 1 -0.3633 0.5735 0.8528 27 1 -0.3633 0.4519 -0.9230 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7583 1.8462 4.4478 31 1 1.1843 0.4959 -2.4354 32 1 2.8512 1.0945 -2.4135 33 1 0.7788 2.9526 -3.4539 34 1 1.1773 1.5340 -4.4557 35 1 2.7607 3.1605 -5.1517 36 1 3.6645 2.1617 -3.9989 37 1 4.0861 4.0701 -5.8680 38 1 3.4451 5.6843 -5.4782 39 1 5.1952 5.4530 -5.7040 40 1 6.5181 4.1891 -4.0025 41 1 5.7103 3.5210 -2.5637 42 1 5.4089 2.8069 -4.1660 43 1 3.8219 6.6416 -3.1349 44 1 4.9223 5.7751 -2.0364 45 1 5.5528 6.5116 -3.5292 46 1 3.8945 2.8060 -1.7084 47 1 3.8515 4.5460 -1.3191 48 1 1.2441 4.1485 -1.7606 49 1 1.9961 3.9289 -0.1708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079342240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:05 Heat of formation + Delta-G solvation = -29.345006 kcal Electronic energy + Delta-G solvation = -22869.554920 eV Core-core repulsion = 20023.244935 eV Total energy + Delta-G solvation = -2846.309986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17625 -38.62761 -35.71923 -33.92374 -33.29108 -31.70439 -29.32420 -28.22717 -28.17335 -26.64310 -25.51517 -24.51977 -22.19038 -21.68337 -20.12847 -19.21579 -18.33880 -17.41529 -16.61310 -16.22992 -15.67506 -15.62404 -15.21334 -14.95796 -14.71085 -14.50256 -14.33381 -14.08628 -13.83771 -13.50170 -13.12391 -12.98760 -12.91390 -12.82627 -12.63869 -12.50732 -12.47628 -12.29474 -12.13584 -11.93288 -11.88668 -11.76132 -11.67395 -11.36840 -11.11951 -11.08421 -10.89213 -10.85022 -10.61141 -10.51692 -8.67990 -8.24153 -6.19136 1.30683 1.34812 1.42166 2.36279 3.09703 3.28349 3.73353 3.77439 3.92091 4.14117 4.20722 4.30870 4.43401 4.47940 4.50953 4.54669 4.62232 4.66809 4.71032 4.78953 4.80631 4.84529 4.93592 4.97856 4.99359 5.00695 5.09155 5.10419 5.14413 5.19329 5.19932 5.24353 5.28544 5.33698 5.37674 5.38294 5.45365 5.47420 5.54955 5.56618 5.67797 5.69817 5.76325 5.84527 6.17820 6.58626 6.83660 6.89779 7.43028 8.92524 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.006225 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.115885 B = 4497.009708 C = 5043.902138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C 0.200 3.800 4 H -0.023 1.023 5 C -0.485 4.485 6 H 0.038 0.962 7 C 0.021 3.979 8 N -0.944 5.944 9 Si 0.912 3.088 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.229 1.229 13 N -0.541 5.541 14 C 0.062 3.938 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.064 4.064 18 H 0.065 0.935 19 C -0.065 4.065 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.131 4.131 24 C 0.068 3.932 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 1.921 -19.163 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.160 4.160 3 C 0.092 3.908 4 H -0.005 1.005 5 C -0.524 4.524 6 H 0.056 0.944 7 C -0.176 4.176 8 N -0.584 5.584 9 Si 0.738 3.262 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.152 1.152 13 N -0.266 5.266 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.082 4.082 18 H 0.083 0.917 19 C -0.065 4.065 20 C -0.196 4.196 21 C -0.199 4.199 22 C -0.199 4.199 23 C -0.170 4.170 24 C -0.059 4.059 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.743 1.917 -18.957 19.900 hybrid contribution 1.414 -0.324 1.179 1.870 sum 7.157 1.593 -17.778 19.230 Atomic orbital electron populations 1.21365 0.95069 0.99239 1.01511 1.21954 0.97670 0.96890 0.99453 1.19359 0.90949 0.91656 0.88839 1.00542 1.21000 1.25557 1.15928 0.89901 0.94411 1.25563 0.98927 0.97775 0.95382 1.70085 1.41513 1.48442 0.98401 0.86467 0.80662 0.80593 0.78523 1.20754 1.21583 1.15230 1.61699 1.61433 1.01616 1.01820 1.21825 0.97955 0.97097 0.89607 1.21401 0.98081 0.99705 0.95953 1.20759 0.96908 0.97079 1.00360 1.20113 0.97266 0.97661 0.93194 0.91674 1.20602 0.94544 0.95124 0.96209 1.21918 1.01895 1.01857 0.93906 1.21928 0.97791 0.99274 1.00909 1.21925 1.01639 0.96676 0.99704 1.21924 0.97685 1.00662 0.96700 1.21693 0.94647 0.89500 1.00083 0.93540 0.94945 0.92293 0.92731 0.93894 0.92907 0.91616 0.96604 0.91755 0.89727 0.89905 0.92502 0.91721 0.92472 0.92219 0.92123 0.94224 0.92321 0.92639 0.93671 0.91970 0.93728 0.91906 0.91862 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.39 71.98 0.68 -4.01 16 2 C -0.12 -5.18 4.54 30.60 0.14 -5.04 16 3 C 0.20 9.30 1.28 44.17 0.06 9.36 16 4 H -0.02 -1.10 6.49 -2.39 -0.02 -1.12 16 5 C -0.49 -27.25 6.62 25.60 0.17 -27.08 16 6 H 0.04 2.39 7.34 -2.91 -0.02 2.37 16 7 C 0.02 1.20 5.37 84.65 0.45 1.66 16 8 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 9 Si 0.91 44.14 25.90 68.60 1.78 45.92 16 10 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.23 -10.12 5.29 99.48 0.53 -9.59 16 13 N -0.54 -21.58 3.85 -879.40 -3.39 -24.97 16 14 C 0.06 1.99 3.85 85.27 0.33 2.31 16 15 C -0.11 -2.82 5.63 30.21 0.17 -2.65 16 16 C -0.11 -2.50 4.00 28.85 0.12 -2.38 16 17 C -0.06 -1.53 1.13 -12.53 -0.01 -1.54 16 18 H 0.06 1.59 7.51 -2.39 -0.02 1.57 16 19 C -0.06 -1.30 0.56 -52.18 -0.03 -1.33 16 20 C -0.14 -2.22 7.95 71.98 0.57 -1.65 16 21 C -0.14 -2.95 7.83 71.98 0.56 -2.39 16 22 C -0.14 -2.93 8.04 71.98 0.58 -2.35 16 23 C -0.13 -4.13 3.84 30.21 0.12 -4.02 16 24 C 0.07 2.61 4.93 85.27 0.42 3.03 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.03 1.55 7.14 -2.39 -0.02 1.53 16 27 H 0.06 2.26 6.86 -2.39 -0.02 2.25 16 28 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16 29 H 0.04 1.93 4.65 -2.39 -0.01 1.92 16 30 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 31 H 0.07 2.07 6.12 -2.39 -0.01 2.05 16 32 H 0.02 0.52 6.48 -2.39 -0.02 0.50 16 33 H 0.06 1.73 7.08 -2.38 -0.02 1.71 16 34 H 0.08 1.72 8.14 -2.38 -0.02 1.71 16 35 H 0.08 1.47 5.97 -2.39 -0.01 1.46 16 36 H 0.06 1.30 5.73 -2.39 -0.01 1.29 16 37 H 0.06 0.96 6.28 -2.39 -0.01 0.95 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 0.97 6.83 -2.39 -0.02 0.95 16 42 H 0.06 1.17 6.50 -2.39 -0.02 1.15 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 1.06 6.39 -2.39 -0.02 1.04 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.04 1.55 6.03 -2.39 -0.01 1.53 16 47 H 0.06 2.00 5.85 -2.39 -0.01 1.99 16 48 H 0.06 2.23 6.58 -2.39 -0.02 2.22 16 49 H 0.05 2.14 6.07 -2.39 -0.01 2.13 16 Total: -1.00 -62.70 332.03 3.73 -58.97 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.72 Total: 16.87 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 4.32 Total: -38.10 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -3.09 Total: -83.66 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.78 Total: 45.92 kcal Total: -62.70 3.73 -58.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079342240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.625 kcal (2) G-P(sol) polarization free energy of solvation -62.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds