Wall clock time and date at job start Mon Mar 30 2020 08:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 C 1.52995 * 109.47114 * 119.99874 * 2 1 3 5 5 N 1.46905 * 109.47191 * 60.55164 * 4 2 1 6 6 C 1.46898 * 110.99852 * 73.34655 * 5 4 2 7 7 C 1.50703 * 109.47163 * 280.12151 * 6 5 4 8 8 H 1.08001 * 120.00026 * 2.76042 * 7 6 5 9 9 C 1.37882 * 120.00179 * 182.76599 * 7 6 5 10 10 N 1.31510 * 119.99732 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00260 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47265 * 59.99333 * 11 9 7 13 13 H 1.48500 * 109.47422 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47120 * 299.99718 * 11 9 7 15 15 C 1.46891 * 111.00036 * 197.29929 * 5 4 2 16 16 C 1.53005 * 109.47089 * 179.97438 * 15 5 4 17 17 C 1.53005 * 109.47196 * 180.02562 * 16 15 5 18 18 H 1.09004 * 109.47140 * 300.00308 * 17 16 15 19 19 C 1.52999 * 109.47050 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46929 * 60.00190 * 17 16 15 21 21 C 1.53005 * 109.47026 * 299.99914 * 20 17 16 22 22 H 1.09004 * 109.46742 * 180.02562 * 21 20 17 23 23 C 1.52996 * 109.46968 * 300.00232 * 21 20 17 24 24 C 1.52992 * 109.46955 * 60.00258 * 21 20 17 25 25 H 1.08999 * 109.47480 * 59.99820 * 1 2 3 26 26 H 1.08999 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47174 * 300.00216 * 1 2 3 28 28 H 1.08999 * 109.47002 * 239.99909 * 2 1 3 29 29 H 1.09001 * 109.47222 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46765 * 299.99941 * 3 2 1 31 31 H 1.08999 * 109.47227 * 60.00046 * 3 2 1 32 32 H 1.08994 * 109.47428 * 300.55417 * 4 2 1 33 33 H 1.09001 * 109.46919 * 180.55060 * 4 2 1 34 34 H 1.08997 * 109.47758 * 40.11958 * 6 5 4 35 35 H 1.09001 * 109.47312 * 160.12053 * 6 5 4 36 36 H 0.97006 * 119.99972 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.47571 * 299.99780 * 15 5 4 38 38 H 1.09003 * 109.46819 * 60.00402 * 16 15 5 39 39 H 1.08991 * 109.47098 * 300.00048 * 16 15 5 40 40 H 1.08993 * 109.47279 * 60.00041 * 19 17 16 41 41 H 1.08996 * 109.46820 * 180.02562 * 19 17 16 42 42 H 1.09004 * 109.47001 * 299.99904 * 19 17 16 43 43 H 1.09004 * 109.47113 * 60.00101 * 20 17 16 44 44 H 1.09003 * 109.46724 * 180.02562 * 20 17 16 45 45 H 1.09009 * 109.46905 * 180.02562 * 23 21 20 46 46 H 1.09005 * 109.47215 * 299.99630 * 23 21 20 47 47 H 1.08993 * 109.47538 * 60.00225 * 23 21 20 48 48 H 1.09007 * 109.47261 * 179.97438 * 24 21 20 49 49 H 1.08998 * 109.47570 * 60.00078 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.5612 -2.1100 1.2426 6 6 2.2841 -2.9113 0.2460 7 6 1.7084 -2.6502 -1.1220 8 1 0.9175 -1.9251 -1.2457 9 6 2.1912 -3.3369 -2.2158 10 7 3.1544 -4.2195 -2.0653 11 14 1.4780 -3.0128 -3.9116 12 1 1.6774 -1.5850 -4.2677 13 1 2.1642 -3.8719 -4.9097 14 1 0.0258 -3.3232 -3.9055 15 6 1.6686 -2.7102 2.5790 16 6 1.1612 -4.1530 2.5324 17 6 1.2725 -4.7780 3.9245 18 1 2.3145 -4.7694 4.2444 19 6 0.7658 -6.2209 3.8777 20 6 0.4285 -3.9723 4.9142 21 6 0.9359 -2.5296 4.9608 22 1 0.3348 -1.9557 5.6662 23 6 2.3984 -2.5176 5.4098 24 6 0.8246 -1.9047 3.5688 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6686 -0.2132 2.1391 33 1 3.1299 -0.7126 1.2541 34 1 3.3389 -2.6367 0.2546 35 1 2.1822 -3.9694 0.4872 36 1 3.4944 -4.7024 -2.8349 37 1 2.7106 -2.7014 2.8987 38 1 1.7623 -4.7268 1.8270 39 1 0.1192 -4.1615 2.2130 40 1 1.3673 -6.7945 3.1728 41 1 0.8447 -6.6659 4.8696 42 1 -0.2762 -6.2298 3.5577 43 1 -0.6135 -3.9809 4.5943 44 1 0.5082 -4.4173 5.9060 45 1 2.7598 -1.4897 5.4434 46 1 2.4777 -2.9628 6.4016 47 1 2.9997 -3.0915 4.7048 48 1 1.1856 -0.8767 3.6020 49 1 -0.2174 -1.9132 3.2488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084948332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:00 Heat of formation + Delta-G solvation = -28.594588 kcal Electronic energy + Delta-G solvation = -22592.170578 eV Core-core repulsion = 19745.893133 eV Total energy + Delta-G solvation = -2846.277445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.47972 -36.81752 -33.65416 -32.99309 -32.42786 -29.31169 -27.40931 -26.63055 -26.42757 -25.85678 -24.23257 -22.30810 -20.71293 -19.90523 -18.94334 -18.32316 -16.37832 -15.51852 -14.90799 -14.66151 -14.33854 -14.02828 -13.78043 -13.66890 -13.39903 -12.95706 -12.74325 -12.42212 -12.24254 -12.04513 -11.88955 -11.66704 -11.63083 -11.45636 -11.30961 -10.93248 -10.87551 -10.77141 -10.62926 -10.59070 -10.37270 -10.21683 -10.12546 -10.03492 -9.92392 -9.58880 -9.41702 -9.16980 -8.91641 -8.27291 -7.08731 -5.94919 -3.92703 3.36483 3.40831 3.43688 4.46414 4.77383 4.91756 4.96961 5.24577 5.36115 5.39517 5.46132 5.56142 5.65929 5.70602 5.75460 5.79820 5.81456 5.89273 5.93945 5.98348 6.02143 6.10755 6.13158 6.15411 6.18322 6.29402 6.31162 6.35775 6.38370 6.47354 6.50795 6.53637 6.58261 6.63243 6.67010 6.75321 6.84147 6.89700 6.98694 7.25002 7.36725 7.42514 7.51383 7.95598 8.24930 8.37122 8.67629 9.14114 9.68674 11.15458 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.006746 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.866803 B = 4149.546996 C = 5295.985711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.073 3.927 5 N -0.530 5.530 6 C 0.186 3.814 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.053 3.947 10 N -0.901 5.901 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.089 3.911 16 C -0.107 4.107 17 C -0.093 4.093 18 H 0.067 0.933 19 C -0.145 4.145 20 C -0.106 4.106 21 C -0.090 4.090 22 H 0.063 0.937 23 C -0.150 4.150 24 C -0.106 4.106 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.111 0.889 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.017 0.983 34 H -0.013 1.013 35 H 0.038 0.962 36 H 0.259 0.741 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 3.275 12.591 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 C -0.201 4.201 4 C -0.055 4.055 5 N -0.254 5.254 6 C 0.061 3.939 7 C -0.539 4.539 8 H 0.094 0.906 9 C -0.148 4.148 10 N -0.541 5.541 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.020 4.020 16 C -0.145 4.145 17 C -0.112 4.112 18 H 0.085 0.915 19 C -0.202 4.202 20 C -0.143 4.143 21 C -0.109 4.109 22 H 0.081 0.919 23 C -0.207 4.207 24 C -0.144 4.144 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.128 0.872 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.004 0.996 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.046 3.145 12.346 13.367 hybrid contribution 0.640 0.128 -0.780 1.017 sum -3.406 3.273 11.566 12.493 Atomic orbital electron populations 1.21643 0.95712 1.02586 0.98591 1.21443 0.96035 0.93814 1.01250 1.21839 1.00323 0.97617 1.00351 1.22006 0.95997 0.90344 0.97142 1.62128 1.57844 1.01492 1.03924 1.19908 0.90983 0.93329 0.89699 1.21428 1.19389 1.21946 0.91116 0.90565 1.24995 0.95353 0.95415 0.99023 1.69951 1.27555 1.26110 1.30470 0.86691 0.79284 0.78093 0.84146 1.20316 1.21565 1.20262 1.21478 0.96383 0.94008 0.90140 1.21724 1.02466 0.95046 0.95234 1.21178 0.99496 0.94427 0.96056 0.91505 1.21802 1.01288 0.96244 1.00875 1.21602 0.99487 0.94746 0.98475 1.21090 0.96382 0.96287 0.97103 0.91891 1.21940 0.96745 1.01403 1.00631 1.21668 1.01011 0.98452 0.93279 0.94798 0.90630 0.94882 0.87156 0.93548 0.93400 0.94014 0.92861 0.96492 0.99558 0.94422 0.93121 0.95538 0.90798 0.91491 0.92642 0.93396 0.92835 0.92104 0.92790 0.93215 0.93371 0.91861 0.92372 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.37 37.16 0.31 -1.99 16 2 C -0.11 -2.03 2.40 -90.62 -0.22 -2.25 16 3 C -0.14 -2.29 9.19 37.16 0.34 -1.94 16 4 C 0.07 1.41 4.27 -3.82 -0.02 1.39 16 5 N -0.53 -10.94 3.56 -228.09 -0.81 -11.75 16 6 C 0.19 4.67 4.61 -4.98 -0.02 4.65 16 7 C -0.50 -13.44 7.22 -34.44 -0.25 -13.69 16 8 H 0.08 1.99 4.50 -52.49 -0.24 1.76 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 11 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.09 1.56 1.67 -67.71 -0.11 1.45 16 16 C -0.11 -1.85 4.24 -26.73 -0.11 -1.96 16 17 C -0.09 -1.28 2.44 -90.62 -0.22 -1.50 16 18 H 0.07 0.94 6.43 -51.93 -0.33 0.60 16 19 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 20 C -0.11 -1.30 4.73 -26.73 -0.13 -1.42 16 21 C -0.09 -1.12 3.19 -90.62 -0.29 -1.41 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 C -0.15 -1.80 8.50 37.16 0.32 -1.49 16 24 C -0.11 -1.58 4.56 -26.73 -0.12 -1.70 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.52 6.70 -51.93 -0.35 1.18 16 27 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.11 2.50 5.13 -51.93 -0.27 2.24 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.92 5.59 -51.93 -0.29 0.63 16 33 H 0.02 0.35 7.74 -51.93 -0.40 -0.06 16 34 H -0.01 -0.37 7.68 -51.93 -0.40 -0.77 16 35 H 0.04 1.01 5.26 -51.93 -0.27 0.74 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.03 0.49 6.43 -51.93 -0.33 0.16 16 38 H 0.07 1.47 5.90 -51.93 -0.31 1.17 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.84 4.81 -51.93 -0.25 0.59 16 48 H 0.06 0.86 6.08 -51.93 -0.32 0.54 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -27.56 350.45 -9.32 -36.89 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.23 Total: 0.79 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -0.28 Total: -21.99 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.08 Total: -37.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.56 -9.32 -36.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084948332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.292 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds