Wall clock time and date at job start Mon Mar 30 2020 08:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 C 1.52995 * 109.47114 * 119.99874 * 2 1 3 5 5 N 1.46905 * 109.47191 * 60.55164 * 4 2 1 6 6 C 1.46898 * 110.99852 * 73.34655 * 5 4 2 7 7 C 1.50703 * 109.47163 * 280.12151 * 6 5 4 8 8 H 1.08001 * 120.00026 * 2.76042 * 7 6 5 9 9 C 1.37882 * 120.00179 * 182.76599 * 7 6 5 10 10 N 1.31510 * 119.99732 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00260 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47265 * 59.99333 * 11 9 7 13 13 H 1.48500 * 109.47422 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47120 * 299.99718 * 11 9 7 15 15 C 1.46891 * 111.00036 * 197.29929 * 5 4 2 16 16 C 1.53005 * 109.47089 * 179.97438 * 15 5 4 17 17 C 1.53005 * 109.47196 * 180.02562 * 16 15 5 18 18 H 1.09004 * 109.47140 * 300.00308 * 17 16 15 19 19 C 1.52999 * 109.47050 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46929 * 60.00190 * 17 16 15 21 21 C 1.53005 * 109.47026 * 299.99914 * 20 17 16 22 22 H 1.09004 * 109.46742 * 180.02562 * 21 20 17 23 23 C 1.52996 * 109.46968 * 300.00232 * 21 20 17 24 24 C 1.52992 * 109.46955 * 60.00258 * 21 20 17 25 25 H 1.08999 * 109.47480 * 59.99820 * 1 2 3 26 26 H 1.08999 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47174 * 300.00216 * 1 2 3 28 28 H 1.08999 * 109.47002 * 239.99909 * 2 1 3 29 29 H 1.09001 * 109.47222 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46765 * 299.99941 * 3 2 1 31 31 H 1.08999 * 109.47227 * 60.00046 * 3 2 1 32 32 H 1.08994 * 109.47428 * 300.55417 * 4 2 1 33 33 H 1.09001 * 109.46919 * 180.55060 * 4 2 1 34 34 H 1.08997 * 109.47758 * 40.11958 * 6 5 4 35 35 H 1.09001 * 109.47312 * 160.12053 * 6 5 4 36 36 H 0.97006 * 119.99972 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.47571 * 299.99780 * 15 5 4 38 38 H 1.09003 * 109.46819 * 60.00402 * 16 15 5 39 39 H 1.08991 * 109.47098 * 300.00048 * 16 15 5 40 40 H 1.08993 * 109.47279 * 60.00041 * 19 17 16 41 41 H 1.08996 * 109.46820 * 180.02562 * 19 17 16 42 42 H 1.09004 * 109.47001 * 299.99904 * 19 17 16 43 43 H 1.09004 * 109.47113 * 60.00101 * 20 17 16 44 44 H 1.09003 * 109.46724 * 180.02562 * 20 17 16 45 45 H 1.09009 * 109.46905 * 180.02562 * 23 21 20 46 46 H 1.09005 * 109.47215 * 299.99630 * 23 21 20 47 47 H 1.08993 * 109.47538 * 60.00225 * 23 21 20 48 48 H 1.09007 * 109.47261 * 179.97438 * 24 21 20 49 49 H 1.08998 * 109.47570 * 60.00078 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.5612 -2.1100 1.2426 6 6 2.2841 -2.9113 0.2460 7 6 1.7084 -2.6502 -1.1220 8 1 0.9175 -1.9251 -1.2457 9 6 2.1912 -3.3369 -2.2158 10 7 3.1544 -4.2195 -2.0653 11 14 1.4780 -3.0128 -3.9116 12 1 1.6774 -1.5850 -4.2677 13 1 2.1642 -3.8719 -4.9097 14 1 0.0258 -3.3232 -3.9055 15 6 1.6686 -2.7102 2.5790 16 6 1.1612 -4.1530 2.5324 17 6 1.2725 -4.7780 3.9245 18 1 2.3145 -4.7694 4.2444 19 6 0.7658 -6.2209 3.8777 20 6 0.4285 -3.9723 4.9142 21 6 0.9359 -2.5296 4.9608 22 1 0.3348 -1.9557 5.6662 23 6 2.3984 -2.5176 5.4098 24 6 0.8246 -1.9047 3.5688 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6686 -0.2132 2.1391 33 1 3.1299 -0.7126 1.2541 34 1 3.3389 -2.6367 0.2546 35 1 2.1822 -3.9694 0.4872 36 1 3.4944 -4.7024 -2.8349 37 1 2.7106 -2.7014 2.8987 38 1 1.7623 -4.7268 1.8270 39 1 0.1192 -4.1615 2.2130 40 1 1.3673 -6.7945 3.1728 41 1 0.8447 -6.6659 4.8696 42 1 -0.2762 -6.2298 3.5577 43 1 -0.6135 -3.9809 4.5943 44 1 0.5082 -4.4173 5.9060 45 1 2.7598 -1.4897 5.4434 46 1 2.4777 -2.9628 6.4016 47 1 2.9997 -3.0915 4.7048 48 1 1.1856 -0.8767 3.6020 49 1 -0.2174 -1.9132 3.2488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084948332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:59 Heat of formation + Delta-G solvation = -42.150833 kcal Electronic energy + Delta-G solvation = -22592.758421 eV Core-core repulsion = 19745.893133 eV Total energy + Delta-G solvation = -2846.865288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81216 -38.30905 -35.22215 -34.56258 -33.99428 -30.84602 -29.15290 -27.86281 -27.60978 -27.22241 -25.83536 -24.03417 -22.02682 -21.34190 -20.51776 -19.53102 -18.38397 -17.02767 -16.57942 -16.21584 -15.67584 -15.45705 -15.32469 -14.83794 -14.76800 -14.32113 -14.14629 -14.00317 -13.74313 -13.48462 -13.22249 -13.14030 -12.92187 -12.78315 -12.73377 -12.61421 -12.46808 -12.14565 -12.04490 -11.99800 -11.77116 -11.65729 -11.59996 -11.48758 -11.22953 -11.13992 -10.90452 -10.80911 -10.64450 -10.34077 -8.86029 -8.10703 -6.15240 1.40794 1.43058 1.50151 2.43647 3.19001 3.29334 3.80152 3.81809 4.05450 4.19482 4.23507 4.28154 4.36867 4.43942 4.47400 4.49449 4.56666 4.66382 4.75242 4.78818 4.81207 4.88949 4.92527 4.94738 5.01528 5.06551 5.07223 5.12319 5.15067 5.18250 5.22426 5.25627 5.28209 5.31310 5.35069 5.44196 5.45015 5.50145 5.52238 5.58800 5.68359 5.71909 5.85075 5.89006 6.22345 6.55867 6.79909 6.99688 7.50435 8.99534 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.006746 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.866803 B = 4149.546996 C = 5295.985711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C -0.136 4.136 4 C 0.075 3.925 5 N -0.530 5.530 6 C 0.203 3.797 7 C -0.502 4.502 8 H 0.084 0.916 9 C -0.004 4.004 10 N -0.940 5.940 11 Si 0.954 3.046 12 H -0.268 1.268 13 H -0.289 1.289 14 H -0.269 1.269 15 C 0.086 3.914 16 C -0.101 4.101 17 C -0.088 4.088 18 H 0.064 0.936 19 C -0.143 4.143 20 C -0.101 4.101 21 C -0.085 4.085 22 H 0.088 0.912 23 C -0.149 4.149 24 C -0.097 4.097 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.082 0.918 33 H -0.003 1.003 34 H -0.053 1.053 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.015 0.985 38 H 0.033 0.967 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.041 0.959 48 H 0.063 0.937 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 4.881 14.395 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.128 4.128 3 C -0.194 4.194 4 C -0.053 4.053 5 N -0.254 5.254 6 C 0.077 3.923 7 C -0.541 4.541 8 H 0.101 0.899 9 C -0.200 4.200 10 N -0.582 5.582 11 Si 0.780 3.220 12 H -0.193 1.193 13 H -0.215 1.215 14 H -0.194 1.194 15 C -0.022 4.022 16 C -0.138 4.138 17 C -0.107 4.107 18 H 0.083 0.917 19 C -0.200 4.200 20 C -0.138 4.138 21 C -0.104 4.104 22 H 0.107 0.893 23 C -0.206 4.206 24 C -0.135 4.135 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.015 0.985 34 H -0.036 1.036 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.832 4.767 14.164 16.043 hybrid contribution 1.223 -0.369 -1.296 1.820 sum -4.609 4.399 12.868 14.359 Atomic orbital electron populations 1.21534 0.94581 1.01296 1.00283 1.21365 0.96963 0.95457 0.98991 1.21755 1.00138 0.95432 1.02055 1.22072 0.94902 0.89592 0.98719 1.62121 1.56574 1.01971 1.04740 1.19540 0.89054 0.92745 0.90939 1.21784 1.19025 1.21399 0.91866 0.89851 1.25850 0.95789 0.95326 1.03064 1.70101 1.29213 1.27447 1.31437 0.85652 0.78700 0.78265 0.79373 1.19294 1.21474 1.19408 1.21622 0.96584 0.94753 0.89269 1.21628 1.00613 0.94735 0.96874 1.21139 1.00107 0.95304 0.94123 0.91730 1.21785 1.00929 0.95320 1.01954 1.21584 0.98937 0.94363 0.98922 1.21100 0.97122 0.96478 0.95692 0.89346 1.21919 0.96046 1.01497 1.01124 1.21600 0.99794 0.98225 0.93875 0.93772 0.93350 0.92467 0.91426 0.93875 0.92359 0.91598 0.89980 0.98465 1.03560 0.96689 0.93270 0.96716 0.94823 0.92630 0.94154 0.90883 0.92695 0.91898 0.90288 0.92867 0.91367 0.93951 0.91873 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.37 71.98 0.60 -3.51 16 2 C -0.11 -4.10 2.40 -10.80 -0.03 -4.12 16 3 C -0.14 -4.07 9.19 71.98 0.66 -3.41 16 4 C 0.08 2.89 4.27 86.30 0.37 3.26 16 5 N -0.53 -22.69 3.56 -875.54 -3.12 -25.81 16 6 C 0.20 10.92 4.61 85.56 0.39 11.31 16 7 C -0.50 -28.13 7.22 25.60 0.18 -27.95 16 8 H 0.08 4.47 4.50 -2.91 -0.01 4.46 16 9 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 10 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16 11 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.09 3.10 1.67 44.92 0.08 3.18 16 16 C -0.10 -3.63 4.24 30.60 0.13 -3.50 16 17 C -0.09 -2.38 2.44 -10.79 -0.03 -2.41 16 18 H 0.06 1.79 6.43 -2.39 -0.02 1.78 16 19 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 20 C -0.10 -2.19 4.73 30.60 0.14 -2.04 16 21 C -0.09 -1.86 3.19 -10.80 -0.03 -1.90 16 22 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 23 C -0.15 -3.21 8.50 71.98 0.61 -2.60 16 24 C -0.10 -2.72 4.56 30.59 0.14 -2.58 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.92 6.70 -2.39 -0.02 1.90 16 27 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.07 3.14 5.13 -2.39 -0.01 3.13 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 2.68 5.59 -2.39 -0.01 2.67 16 33 H 0.00 -0.12 7.74 -2.39 -0.02 -0.14 16 34 H -0.05 -3.21 7.68 -2.39 -0.02 -3.23 16 35 H 0.02 0.88 5.26 -2.39 -0.01 0.87 16 36 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 37 H 0.01 0.58 6.43 -2.39 -0.02 0.56 16 38 H 0.03 1.46 5.90 -2.39 -0.01 1.44 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 46 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.04 1.09 4.81 -2.39 -0.01 1.08 16 48 H 0.06 1.70 6.08 -2.38 -0.01 1.68 16 49 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -62.94 350.45 4.43 -58.51 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.88 Total: 16.52 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 4.35 Total: -38.85 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.83 Total: -83.32 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -62.94 4.43 -58.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084948332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.356 kcal (2) G-P(sol) polarization free energy of solvation -62.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds