Wall clock time and date at job start Mon Mar 30 2020 07:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 C 1.53003 * 109.46820 * 119.99251 * 2 1 3 5 5 N 1.46911 * 109.46956 * 65.89233 * 4 2 1 6 6 C 1.46900 * 110.99682 * 200.04779 * 5 4 2 7 7 C 1.50694 * 109.47214 * 71.64642 * 6 5 4 8 8 H 1.07996 * 120.00445 * 5.08510 * 7 6 5 9 9 C 1.37882 * 119.99944 * 185.07901 * 7 6 5 10 10 N 1.31517 * 119.99755 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99987 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46959 * 90.00289 * 11 9 7 13 13 H 1.48500 * 109.47119 * 210.00153 * 11 9 7 14 14 H 1.48498 * 109.47307 * 330.00368 * 11 9 7 15 15 C 1.46896 * 110.99942 * 76.09139 * 5 4 2 16 16 H 1.08999 * 109.47473 * 309.99971 * 15 5 4 17 17 C 1.53001 * 109.47071 * 70.00000 * 15 5 4 18 18 C 1.53005 * 109.47051 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47190 * 300.00498 * 18 17 15 20 20 H 1.09005 * 109.47019 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47320 * 299.99777 * 19 18 17 22 22 C 1.53001 * 109.47530 * 59.99795 * 19 18 17 23 23 H 1.08999 * 109.46995 * 60.00045 * 22 19 18 24 24 C 1.52997 * 109.47530 * 179.97438 * 22 19 18 25 25 C 1.53004 * 109.46649 * 189.99943 * 15 5 4 26 26 H 1.09001 * 109.46632 * 55.01695 * 1 2 3 27 27 H 1.08997 * 109.46931 * 295.02525 * 1 2 3 28 28 H 1.08994 * 109.47092 * 175.02076 * 1 2 3 29 29 H 1.08998 * 109.47577 * 239.98913 * 2 1 3 30 30 H 1.08989 * 109.47703 * 59.99161 * 3 2 1 31 31 H 1.08999 * 109.47325 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46706 * 299.99179 * 3 2 1 33 33 H 1.09000 * 109.47133 * 185.88780 * 4 2 1 34 34 H 1.08998 * 109.47335 * 305.89063 * 4 2 1 35 35 H 1.08999 * 109.46902 * 191.64682 * 6 5 4 36 36 H 1.09008 * 109.47128 * 311.64368 * 6 5 4 37 37 H 0.97002 * 119.99554 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.46966 * 299.99668 * 17 15 5 39 39 H 1.09004 * 109.47299 * 60.00329 * 17 15 5 40 40 H 1.08997 * 109.47309 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.46823 * 60.00410 * 18 17 15 42 42 H 1.08994 * 109.47647 * 180.02562 * 21 19 18 43 43 H 1.09006 * 109.46690 * 300.00528 * 21 19 18 44 44 H 1.08996 * 109.47209 * 59.99845 * 21 19 18 45 45 H 1.08997 * 109.47435 * 179.97438 * 24 22 19 46 46 H 1.09004 * 109.46661 * 300.00207 * 24 22 19 47 47 H 1.09004 * 109.47324 * 59.99409 * 24 22 19 48 48 H 1.08995 * 109.47363 * 299.99694 * 25 15 5 49 49 H 1.09000 * 109.46810 * 60.00243 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6697 -2.1411 1.1805 6 6 1.7027 -2.7589 2.5129 7 6 0.5438 -2.2506 3.3311 8 1 -0.1940 -1.6042 2.8792 9 6 0.4253 -2.6108 4.6568 10 7 1.3239 -3.3977 5.2072 11 14 -1.0117 -1.9813 5.6708 12 1 -2.1455 -2.9347 5.5678 13 1 -0.5978 -1.8561 7.0915 14 1 -1.4341 -0.6527 5.1594 15 6 2.5368 -2.8663 0.2423 16 1 2.5782 -2.3279 -0.7045 17 6 3.9455 -2.9746 0.8295 18 6 4.8485 -3.7305 -0.1475 19 6 4.2845 -5.1332 -0.3822 20 1 4.9275 -5.6715 -1.0785 21 6 4.2262 -5.8885 0.9471 22 6 2.8758 -5.0249 -0.9693 23 1 2.9172 -4.4868 -1.9163 24 6 2.3120 -6.4276 -1.2046 25 6 1.9730 -4.2691 0.0072 26 1 -0.3632 0.5892 -0.8420 27 1 -0.3633 0.4347 0.9312 28 1 -0.3633 -1.0237 -0.0892 29 1 1.8934 -0.5140 -0.8898 30 1 1.6768 1.9564 0.8898 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 3.1248 -0.6307 1.3037 34 1 1.5931 -0.2717 2.1362 35 1 1.6297 -3.8419 2.4132 36 1 2.6385 -2.5020 3.0095 37 1 1.2403 -3.6514 6.1397 38 1 4.3471 -1.9753 0.9970 39 1 3.9042 -3.5131 1.7763 40 1 5.8522 -3.8072 0.2706 41 1 4.8899 -3.1923 -1.0945 42 1 3.8249 -6.8880 0.7799 43 1 5.2299 -5.9657 1.3654 44 1 3.5830 -5.3501 1.6431 45 1 1.3083 -6.3505 -1.6225 46 1 2.9555 -6.9656 -1.9008 47 1 2.2707 -6.9662 -0.2578 48 1 1.9317 -4.8075 0.9540 49 1 0.9694 -4.1919 -0.4111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085025678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:25 Heat of formation + Delta-G solvation = -36.711019 kcal Electronic energy + Delta-G solvation = -22619.386377 eV Core-core repulsion = 19772.756978 eV Total energy + Delta-G solvation = -2846.629400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62139 -36.83852 -34.09483 -32.55729 -31.81224 -29.89934 -27.22824 -27.01706 -26.62693 -25.25469 -24.10363 -22.34860 -21.44978 -20.09148 -18.70071 -17.86028 -16.25621 -15.48431 -15.07083 -14.72206 -14.52172 -14.30265 -13.80403 -13.60466 -13.15417 -13.07535 -12.63532 -12.34809 -12.11874 -12.06100 -11.82319 -11.73704 -11.65947 -11.53052 -11.41877 -11.10387 -10.93450 -10.75718 -10.65486 -10.54024 -10.42004 -10.31014 -10.09873 -9.96386 -9.88569 -9.70095 -9.65493 -9.28679 -9.07946 -8.35026 -7.03382 -5.96926 -3.96936 3.34259 3.40475 3.44121 4.46445 4.80429 4.98898 5.05365 5.20275 5.37538 5.41231 5.45801 5.50041 5.54782 5.66950 5.70942 5.76093 5.79683 5.90966 5.93007 5.99206 6.01878 6.08180 6.16417 6.19028 6.22312 6.24807 6.24953 6.33020 6.33957 6.38536 6.45656 6.53149 6.57946 6.64706 6.66553 6.71698 6.74890 6.92248 6.97614 7.00429 7.05131 7.40785 7.48797 7.91065 8.22880 8.33297 8.67707 9.12493 9.66892 11.13233 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.007347 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.261220 B = 3810.276269 C = 5072.065414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.065 3.935 5 N -0.528 5.528 6 C 0.192 3.808 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.089 3.911 16 H 0.063 0.937 17 C -0.155 4.155 18 C -0.107 4.107 19 C -0.083 4.083 20 H 0.059 0.941 21 C -0.154 4.154 22 C -0.085 4.085 23 H 0.062 0.938 24 C -0.147 4.147 25 C -0.105 4.105 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.020 0.980 34 H 0.080 0.920 35 H 0.030 0.970 36 H -0.006 1.006 37 H 0.259 0.741 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 -0.040 -12.213 13.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.063 4.063 5 N -0.250 5.250 6 C 0.067 3.933 7 C -0.540 4.540 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.020 4.020 16 H 0.081 0.919 17 C -0.194 4.194 18 C -0.146 4.146 19 C -0.101 4.101 20 H 0.078 0.922 21 C -0.211 4.211 22 C -0.104 4.104 23 H 0.080 0.920 24 C -0.204 4.204 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.012 0.988 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.447 -0.147 -12.193 12.980 hybrid contribution 0.180 0.349 1.030 1.102 sum 4.627 0.202 -11.163 12.086 Atomic orbital electron populations 1.21647 0.94950 1.02221 1.00021 1.21098 0.96570 0.94534 0.98691 1.21820 1.00296 0.96996 1.01166 1.22067 0.96671 0.89923 0.97658 1.62257 1.49760 1.00946 1.12076 1.19738 0.95942 0.94793 0.82802 1.21223 1.09009 1.29428 0.94369 0.91950 1.24971 0.96302 0.95519 0.97848 1.69958 1.34887 1.36044 1.13054 0.86584 0.82764 0.79280 0.79288 1.20770 1.21472 1.19938 1.21604 0.89792 0.94557 0.96048 0.91919 1.22287 0.97137 0.99825 1.00146 1.21490 0.98363 0.95536 0.99171 1.21082 0.96064 0.95886 0.97101 0.92233 1.22007 1.01577 1.00036 0.97510 1.21111 0.94750 0.95933 0.98560 0.91965 1.21866 1.00319 0.96743 1.01470 1.21645 0.98071 0.94960 0.99608 0.94748 0.93120 0.91474 0.92253 0.92804 0.93421 0.93377 0.96178 0.90136 0.95246 0.98769 0.93129 0.92761 0.90610 0.92819 0.92762 0.92898 0.93471 0.91044 0.92947 0.93400 0.92301 0.90775 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.03 37.16 0.34 -1.79 16 2 C -0.09 -1.43 2.98 -90.62 -0.27 -1.70 16 3 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 4 C 0.07 1.25 4.10 -3.82 -0.02 1.23 16 5 N -0.53 -10.86 3.91 -228.07 -0.89 -11.76 16 6 C 0.19 4.81 3.46 -4.98 -0.02 4.79 16 7 C -0.50 -13.83 8.28 -34.44 -0.29 -14.12 16 8 H 0.06 1.72 7.80 -52.49 -0.41 1.32 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 11 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.09 1.56 2.11 -67.71 -0.14 1.42 16 16 H 0.06 1.05 6.58 -51.93 -0.34 0.71 16 17 C -0.15 -2.62 4.25 -26.73 -0.11 -2.73 16 18 C -0.11 -1.49 5.45 -26.73 -0.15 -1.64 16 19 C -0.08 -1.10 2.72 -90.62 -0.25 -1.35 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.15 -2.21 8.15 37.16 0.30 -1.91 16 22 C -0.08 -1.15 2.49 -90.64 -0.23 -1.37 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 C -0.15 -1.80 8.84 37.16 0.33 -1.47 16 25 C -0.11 -1.76 4.17 -26.75 -0.11 -1.87 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 29 H 0.06 0.93 6.66 -51.93 -0.35 0.58 16 30 H 0.05 0.74 8.14 -51.94 -0.42 0.32 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.02 0.38 6.17 -51.93 -0.32 0.06 16 34 H 0.08 1.75 7.10 -51.93 -0.37 1.38 16 35 H 0.03 0.79 5.95 -51.93 -0.31 0.48 16 36 H -0.01 -0.15 7.12 -51.92 -0.37 -0.52 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.05 0.94 6.45 -51.93 -0.33 0.60 16 39 H 0.08 1.48 4.97 -51.93 -0.26 1.22 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.05 0.70 6.43 -51.93 -0.33 0.36 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.23 4.81 -51.93 -0.25 0.98 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 48 H 0.07 1.41 4.57 -51.93 -0.24 1.17 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 351.85 15.07 5.30 5.30 Total: -1.00 -27.82 351.85 -9.49 -37.31 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -9.25 Total: 0.90 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -0.36 Total: -22.72 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.16 Total: -37.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.82 -9.49 -37.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.600 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds