Wall clock time and date at job start Mon Mar 30 2020 07:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 C 1.53003 * 109.46820 * 119.99251 * 2 1 3 5 5 N 1.46911 * 109.46956 * 65.89233 * 4 2 1 6 6 C 1.46900 * 110.99682 * 200.04779 * 5 4 2 7 7 C 1.50694 * 109.47214 * 71.64642 * 6 5 4 8 8 H 1.07996 * 120.00445 * 5.08510 * 7 6 5 9 9 C 1.37882 * 119.99944 * 185.07901 * 7 6 5 10 10 N 1.31517 * 119.99755 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99987 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46959 * 90.00289 * 11 9 7 13 13 H 1.48500 * 109.47119 * 210.00153 * 11 9 7 14 14 H 1.48498 * 109.47307 * 330.00368 * 11 9 7 15 15 C 1.46896 * 110.99942 * 76.09139 * 5 4 2 16 16 H 1.08999 * 109.47473 * 309.99971 * 15 5 4 17 17 C 1.53001 * 109.47071 * 70.00000 * 15 5 4 18 18 C 1.53005 * 109.47051 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47190 * 300.00498 * 18 17 15 20 20 H 1.09005 * 109.47019 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47320 * 299.99777 * 19 18 17 22 22 C 1.53001 * 109.47530 * 59.99795 * 19 18 17 23 23 H 1.08999 * 109.46995 * 60.00045 * 22 19 18 24 24 C 1.52997 * 109.47530 * 179.97438 * 22 19 18 25 25 C 1.53004 * 109.46649 * 189.99943 * 15 5 4 26 26 H 1.09001 * 109.46632 * 55.01695 * 1 2 3 27 27 H 1.08997 * 109.46931 * 295.02525 * 1 2 3 28 28 H 1.08994 * 109.47092 * 175.02076 * 1 2 3 29 29 H 1.08998 * 109.47577 * 239.98913 * 2 1 3 30 30 H 1.08989 * 109.47703 * 59.99161 * 3 2 1 31 31 H 1.08999 * 109.47325 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46706 * 299.99179 * 3 2 1 33 33 H 1.09000 * 109.47133 * 185.88780 * 4 2 1 34 34 H 1.08998 * 109.47335 * 305.89063 * 4 2 1 35 35 H 1.08999 * 109.46902 * 191.64682 * 6 5 4 36 36 H 1.09008 * 109.47128 * 311.64368 * 6 5 4 37 37 H 0.97002 * 119.99554 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.46966 * 299.99668 * 17 15 5 39 39 H 1.09004 * 109.47299 * 60.00329 * 17 15 5 40 40 H 1.08997 * 109.47309 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.46823 * 60.00410 * 18 17 15 42 42 H 1.08994 * 109.47647 * 180.02562 * 21 19 18 43 43 H 1.09006 * 109.46690 * 300.00528 * 21 19 18 44 44 H 1.08996 * 109.47209 * 59.99845 * 21 19 18 45 45 H 1.08997 * 109.47435 * 179.97438 * 24 22 19 46 46 H 1.09004 * 109.46661 * 300.00207 * 24 22 19 47 47 H 1.09004 * 109.47324 * 59.99409 * 24 22 19 48 48 H 1.08995 * 109.47363 * 299.99694 * 25 15 5 49 49 H 1.09000 * 109.46810 * 60.00243 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6697 -2.1411 1.1805 6 6 1.7027 -2.7589 2.5129 7 6 0.5438 -2.2506 3.3311 8 1 -0.1940 -1.6042 2.8792 9 6 0.4253 -2.6108 4.6568 10 7 1.3239 -3.3977 5.2072 11 14 -1.0117 -1.9813 5.6708 12 1 -2.1455 -2.9347 5.5678 13 1 -0.5978 -1.8561 7.0915 14 1 -1.4341 -0.6527 5.1594 15 6 2.5368 -2.8663 0.2423 16 1 2.5782 -2.3279 -0.7045 17 6 3.9455 -2.9746 0.8295 18 6 4.8485 -3.7305 -0.1475 19 6 4.2845 -5.1332 -0.3822 20 1 4.9275 -5.6715 -1.0785 21 6 4.2262 -5.8885 0.9471 22 6 2.8758 -5.0249 -0.9693 23 1 2.9172 -4.4868 -1.9163 24 6 2.3120 -6.4276 -1.2046 25 6 1.9730 -4.2691 0.0072 26 1 -0.3632 0.5892 -0.8420 27 1 -0.3633 0.4347 0.9312 28 1 -0.3633 -1.0237 -0.0892 29 1 1.8934 -0.5140 -0.8898 30 1 1.6768 1.9564 0.8898 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 3.1248 -0.6307 1.3037 34 1 1.5931 -0.2717 2.1362 35 1 1.6297 -3.8419 2.4132 36 1 2.6385 -2.5020 3.0095 37 1 1.2403 -3.6514 6.1397 38 1 4.3471 -1.9753 0.9970 39 1 3.9042 -3.5131 1.7763 40 1 5.8522 -3.8072 0.2706 41 1 4.8899 -3.1923 -1.0945 42 1 3.8249 -6.8880 0.7799 43 1 5.2299 -5.9657 1.3654 44 1 3.5830 -5.3501 1.6431 45 1 1.3083 -6.3505 -1.6225 46 1 2.9555 -6.9656 -1.9008 47 1 2.2707 -6.9662 -0.2578 48 1 1.9317 -4.8075 0.9540 49 1 0.9694 -4.1919 -0.4111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085025678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:24 Heat of formation + Delta-G solvation = -50.704254 kcal Electronic energy + Delta-G solvation = -22619.993170 eV Core-core repulsion = 19772.756978 eV Total energy + Delta-G solvation = -2847.236192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98425 -38.25341 -35.60954 -34.52606 -33.04265 -31.41013 -28.93887 -28.44472 -27.85663 -26.48474 -25.78812 -24.10897 -22.67776 -21.53278 -20.07371 -19.28079 -18.30206 -16.90029 -16.58820 -16.23819 -16.02791 -15.78202 -15.34510 -14.87687 -14.55997 -14.29225 -14.16511 -13.83641 -13.75692 -13.36174 -13.24862 -13.09667 -12.98571 -12.79233 -12.78975 -12.69003 -12.58803 -12.40698 -12.09813 -11.96381 -11.83961 -11.71023 -11.53989 -11.42772 -11.37295 -11.16585 -10.95000 -10.84673 -10.78163 -10.51833 -8.77023 -8.15679 -6.24505 1.38382 1.39242 1.50177 2.40564 3.15389 3.33126 3.78972 3.85866 3.93742 4.10442 4.21317 4.26071 4.32043 4.43178 4.44260 4.52294 4.58936 4.64055 4.68867 4.80064 4.82852 4.85534 4.90738 4.93092 4.97262 5.05659 5.11507 5.12274 5.14596 5.16321 5.18172 5.22318 5.25086 5.28593 5.34442 5.38099 5.45632 5.48649 5.55175 5.59594 5.60811 5.66234 5.72547 5.75403 6.17988 6.51132 6.81572 6.94573 7.44546 8.93585 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.007347 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.261220 B = 3810.276269 C = 5072.065414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.140 4.140 4 C 0.068 3.932 5 N -0.532 5.532 6 C 0.218 3.782 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.933 5.933 11 Si 0.960 3.040 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.089 3.911 16 H 0.083 0.917 17 C -0.148 4.148 18 C -0.102 4.102 19 C -0.079 4.079 20 H 0.090 0.910 21 C -0.152 4.152 22 C -0.078 4.078 23 H 0.081 0.919 24 C -0.144 4.144 25 C -0.100 4.100 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.020 0.980 34 H 0.047 0.953 35 H 0.006 0.994 36 H -0.041 1.041 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.031 0.969 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.040 0.960 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 0.546 -14.752 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.101 4.101 3 C -0.198 4.198 4 C -0.060 4.060 5 N -0.255 5.255 6 C 0.091 3.909 7 C -0.554 4.554 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.574 5.574 11 Si 0.785 3.215 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.191 1.191 15 C -0.020 4.020 16 H 0.101 0.899 17 C -0.187 4.187 18 C -0.140 4.140 19 C -0.097 4.097 20 H 0.108 0.892 21 C -0.209 4.209 22 C -0.097 4.097 23 H 0.100 0.900 24 C -0.201 4.201 25 C -0.138 4.138 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.024 0.976 36 H -0.023 1.023 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.675 0.446 -14.752 15.482 hybrid contribution 0.124 0.160 1.825 1.836 sum 4.799 0.607 -12.927 13.803 Atomic orbital electron populations 1.21594 0.95129 1.01277 1.00402 1.21049 0.96324 0.95849 0.96874 1.21775 1.00811 0.95107 1.02058 1.22061 0.96491 0.89105 0.98364 1.62216 1.51368 1.01902 1.09989 1.19256 0.93424 0.93441 0.84737 1.21530 1.09536 1.29244 0.95115 0.92416 1.25828 0.99005 0.95650 0.99095 1.70093 1.36734 1.37201 1.13414 0.85526 0.79392 0.78989 0.77594 1.20014 1.20903 1.19091 1.21722 0.89622 0.94883 0.95725 0.89881 1.22165 0.97609 0.99412 0.99528 1.21476 0.97821 0.95621 0.99039 1.21108 0.96354 0.95562 0.96717 0.89217 1.21964 1.01010 1.00243 0.97660 1.21089 0.94058 0.96465 0.98079 0.90033 1.21841 1.00991 0.95867 1.01449 1.21582 0.98634 0.94587 0.98995 0.91786 0.94768 0.93553 0.91073 0.93468 0.92635 0.90920 0.96193 0.93464 0.97634 1.02296 0.93013 0.93524 0.94240 0.91947 0.90553 0.91945 0.92896 0.94968 0.92733 0.90982 0.93567 0.94114 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 9.03 71.98 0.65 -3.34 16 2 C -0.08 -2.51 2.98 -10.79 -0.03 -2.54 16 3 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 4 C 0.07 2.67 4.10 86.30 0.35 3.03 16 5 N -0.53 -22.83 3.91 -875.49 -3.43 -26.26 16 6 C 0.22 11.65 3.46 85.56 0.30 11.94 16 7 C -0.52 -29.80 8.28 25.60 0.21 -29.59 16 8 H 0.06 3.32 7.80 -2.91 -0.02 3.29 16 9 C 0.00 0.10 5.46 84.66 0.46 0.56 16 10 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 11 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 C 0.09 3.14 2.11 44.92 0.09 3.23 16 16 H 0.08 2.62 6.58 -2.39 -0.02 2.60 16 17 C -0.15 -5.11 4.25 30.60 0.13 -4.98 16 18 C -0.10 -2.63 5.45 30.59 0.17 -2.46 16 19 C -0.08 -1.94 2.72 -10.79 -0.03 -1.97 16 20 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 21 C -0.15 -4.37 8.15 71.98 0.59 -3.79 16 22 C -0.08 -1.97 2.49 -10.81 -0.03 -1.99 16 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 24 C -0.14 -3.25 8.84 71.98 0.64 -2.61 16 25 C -0.10 -3.40 4.17 30.58 0.13 -3.27 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.63 7.92 -2.39 -0.02 1.61 16 29 H 0.07 2.04 6.66 -2.39 -0.02 2.02 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.02 0.78 6.17 -2.39 -0.01 0.76 16 34 H 0.05 2.15 7.10 -2.39 -0.02 2.13 16 35 H 0.01 0.33 5.95 -2.39 -0.01 0.31 16 36 H -0.04 -2.42 7.12 -2.38 -0.02 -2.44 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.05 1.64 6.45 -2.39 -0.02 1.63 16 39 H 0.04 1.65 4.97 -2.38 -0.01 1.64 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.06 1.64 6.43 -2.39 -0.02 1.62 16 43 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.03 1.18 4.81 -2.39 -0.01 1.17 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.05 1.15 6.43 -2.38 -0.02 1.13 16 48 H 0.04 1.66 4.57 -2.39 -0.01 1.65 16 49 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -63.54 351.85 4.05 -59.49 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.88 Total: 16.77 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 4.29 Total: -40.62 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.14 Total: -83.22 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -63.54 4.05 -59.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.784 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds