Wall clock time and date at job start Mon Mar 30 2020 07:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 C 1.52996 * 109.47227 * 120.00453 * 2 1 3 5 5 N 1.46902 * 109.47196 * 176.72014 * 4 2 1 6 6 C 1.46899 * 111.00124 * 164.00368 * 5 4 2 7 7 C 1.50704 * 109.46923 * 288.52020 * 6 5 4 8 8 H 1.08002 * 119.99660 * 356.72634 * 7 6 5 9 9 C 1.37874 * 120.00288 * 177.00247 * 7 6 5 10 10 N 1.31515 * 120.00354 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99711 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47087 * 89.99891 * 11 9 7 13 13 H 1.48503 * 109.47033 * 209.99767 * 11 9 7 14 14 H 1.48496 * 109.47359 * 329.99945 * 11 9 7 15 15 C 1.46904 * 110.99691 * 287.95268 * 5 4 2 16 16 H 1.08997 * 109.46976 * 55.00185 * 15 5 4 17 17 C 1.53001 * 109.47104 * 294.99948 * 15 5 4 18 18 C 1.52998 * 109.46997 * 180.02562 * 17 15 5 19 19 C 1.52998 * 109.47316 * 60.00172 * 18 17 15 20 20 H 1.08997 * 109.47189 * 60.00130 * 19 18 17 21 21 C 1.53006 * 109.47155 * 180.02562 * 19 18 17 22 22 C 1.53001 * 109.46948 * 299.99858 * 19 18 17 23 23 H 1.09000 * 109.47554 * 179.97438 * 22 19 18 24 24 C 1.53003 * 109.47209 * 300.00232 * 22 19 18 25 25 C 1.52998 * 109.47118 * 175.00175 * 15 5 4 26 26 H 1.08997 * 109.46977 * 299.99524 * 1 2 3 27 27 H 1.09000 * 109.47025 * 59.99677 * 1 2 3 28 28 H 1.08999 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47095 * 239.99885 * 2 1 3 30 30 H 1.09000 * 109.46892 * 64.99567 * 3 2 1 31 31 H 1.09006 * 109.47035 * 184.99379 * 3 2 1 32 32 H 1.08994 * 109.47187 * 304.99407 * 3 2 1 33 33 H 1.09000 * 109.47721 * 56.71704 * 4 2 1 34 34 H 1.09001 * 109.46974 * 296.71682 * 4 2 1 35 35 H 1.08998 * 109.47397 * 168.52254 * 6 5 4 36 36 H 1.09001 * 109.47575 * 48.51914 * 6 5 4 37 37 H 0.96999 * 120.00091 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47398 * 299.99979 * 17 15 5 39 39 H 1.09003 * 109.47111 * 60.00373 * 17 15 5 40 40 H 1.09003 * 109.47244 * 299.99527 * 18 17 15 41 41 H 1.09001 * 109.47274 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.46973 * 180.02562 * 21 19 18 43 43 H 1.08998 * 109.46527 * 299.99641 * 21 19 18 44 44 H 1.08998 * 109.47205 * 59.99247 * 21 19 18 45 45 H 1.08998 * 109.47258 * 180.02562 * 24 22 19 46 46 H 1.09007 * 109.46809 * 299.99707 * 24 22 19 47 47 H 1.08994 * 109.47558 * 59.99919 * 24 22 19 48 48 H 1.09001 * 109.46949 * 300.00209 * 25 15 5 49 49 H 1.09003 * 109.47490 * 59.99516 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5069 -0.7903 1.2102 6 6 4.0537 -1.1220 2.5326 7 6 3.8921 0.0597 3.4538 8 1 3.4779 0.9839 3.0788 9 6 4.2782 -0.0373 4.7738 10 7 4.1376 0.9941 5.5776 11 14 5.0023 -1.6333 5.4203 12 1 6.4772 -1.6129 5.2488 13 1 4.6734 -1.7783 6.8611 14 1 4.4320 -2.7775 4.6648 15 6 3.9619 -1.7511 0.1963 16 1 3.5277 -1.4931 -0.7695 17 6 3.5192 -3.1606 0.5944 18 6 3.9937 -4.1613 -0.4612 19 6 5.5199 -4.1146 -0.5588 20 1 5.9537 -4.3725 0.4073 21 6 5.9943 -5.1149 -1.6149 22 6 5.9625 -2.7052 -0.9568 23 1 7.0498 -2.6717 -1.0259 24 6 5.3534 -2.3432 -2.3129 25 6 5.4880 -1.7046 0.0982 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.7516 1.9298 0.9314 31 1 3.1264 1.4438 -0.0895 32 1 1.6055 1.9815 -0.8418 33 1 1.6295 -1.7306 1.2791 34 1 1.7255 -0.1747 2.1382 35 1 5.1116 -1.3665 2.4375 36 1 3.5183 -1.9784 2.9429 37 1 4.4089 0.9257 6.5064 38 1 3.9535 -3.4186 1.5602 39 1 2.4320 -3.1938 0.6642 40 1 3.5597 -3.9035 -1.4273 41 1 3.6780 -5.1654 -0.1779 42 1 7.0815 -5.0820 -1.6840 43 1 5.6788 -6.1191 -1.3317 44 1 5.5603 -4.8567 -2.5808 45 1 5.6692 -1.3393 -2.5967 46 1 5.6915 -3.0562 -3.0650 47 1 4.2662 -2.3764 -2.2435 48 1 5.8034 -0.7005 -0.1853 49 1 5.9223 -1.9626 1.0641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085025681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:27 Heat of formation + Delta-G solvation = -30.459359 kcal Electronic energy + Delta-G solvation = -22637.274522 eV Core-core repulsion = 19790.916214 eV Total energy + Delta-G solvation = -2846.358308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79822 -36.98902 -34.21919 -32.51656 -31.55133 -30.65704 -27.71514 -27.34534 -26.62303 -25.29384 -23.84360 -22.23231 -21.72731 -20.13737 -18.95606 -17.90534 -16.78799 -15.59462 -15.23814 -14.79189 -14.38302 -13.98185 -13.82783 -13.65534 -13.52569 -13.27313 -12.98487 -12.51357 -12.38062 -12.35635 -12.15977 -11.84934 -11.79551 -11.54420 -11.49719 -11.27344 -10.98225 -10.85749 -10.72220 -10.56507 -10.50090 -10.34183 -10.23480 -10.00726 -9.93697 -9.80299 -9.66540 -9.43651 -9.15229 -8.50496 -7.16734 -6.00488 -3.95916 3.29650 3.37364 3.39190 4.45325 4.67230 4.84012 4.84871 5.08006 5.26728 5.32424 5.37725 5.38810 5.46371 5.47397 5.55799 5.59727 5.66712 5.74948 5.78775 5.83870 5.89942 5.98154 6.01829 6.03217 6.08849 6.11033 6.17097 6.19976 6.24807 6.33294 6.34249 6.44616 6.49273 6.49720 6.52304 6.59668 6.64942 6.76941 6.79205 6.91170 6.98523 7.05315 7.09966 7.71772 8.03320 8.19222 8.74728 9.11177 9.62703 11.12939 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.007813 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.645986 B = 3582.951541 C = 4969.670953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.063 3.937 5 N -0.517 5.517 6 C 0.158 3.842 7 C -0.502 4.502 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.902 5.902 11 Si 0.869 3.131 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.085 3.915 16 H 0.074 0.926 17 C -0.156 4.156 18 C -0.107 4.107 19 C -0.089 4.089 20 H 0.067 0.933 21 C -0.147 4.147 22 C -0.084 4.084 23 H 0.065 0.935 24 C -0.149 4.149 25 C -0.108 4.108 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.021 0.979 34 H 0.085 0.915 35 H 0.027 0.973 36 H -0.012 1.012 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -8.905 -14.967 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.189 4.189 4 C -0.065 4.065 5 N -0.239 5.239 6 C 0.032 3.968 7 C -0.540 4.540 8 H 0.099 0.901 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.697 3.303 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.193 1.193 15 C -0.024 4.024 16 H 0.092 0.908 17 C -0.195 4.195 18 C -0.146 4.146 19 C -0.107 4.107 20 H 0.085 0.915 21 C -0.204 4.204 22 C -0.103 4.103 23 H 0.083 0.917 24 C -0.206 4.206 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.006 0.994 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.552 -8.357 -14.888 17.082 hybrid contribution 0.125 -1.686 0.863 1.898 sum -0.427 -10.043 -14.025 17.255 Atomic orbital electron populations 1.21816 0.96207 1.00906 1.01368 1.21090 0.94124 0.97354 0.98283 1.21644 1.02092 0.94844 1.00296 1.22123 0.88353 0.97756 0.98267 1.62133 1.07851 1.46583 1.07322 1.20238 0.94650 0.96056 0.85900 1.21091 1.41122 0.98866 0.92957 0.90120 1.24888 0.95693 0.95893 0.96890 1.69896 1.48737 1.29907 1.05670 0.86951 0.79977 0.85118 0.78263 1.20269 1.21353 1.19275 1.21720 0.95098 0.89117 0.96475 0.90769 1.22272 1.00728 0.97164 0.99351 1.21538 0.95117 0.98625 0.99270 1.21153 0.95939 0.94850 0.98777 0.91500 1.21881 1.00716 0.98603 0.99211 1.21105 0.99429 0.94391 0.95362 0.91654 1.21968 1.01413 1.00797 0.96456 1.21640 0.95400 0.98915 0.98612 0.92620 0.93275 0.93452 0.92358 0.92803 0.91518 0.94708 0.96053 0.89640 0.95507 0.99383 0.92831 0.91791 0.92198 0.92031 0.92892 0.93018 0.93216 0.92510 0.92905 0.93116 0.92154 0.91274 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 2 C -0.09 -1.40 2.92 -90.62 -0.26 -1.66 16 3 C -0.13 -2.14 9.00 37.16 0.33 -1.81 16 4 C 0.06 1.18 4.10 -3.82 -0.02 1.17 16 5 N -0.52 -10.33 3.87 -228.08 -0.88 -11.21 16 6 C 0.16 3.73 2.74 -4.97 -0.01 3.72 16 7 C -0.50 -14.09 8.88 -34.44 -0.31 -14.40 16 8 H 0.08 2.48 7.96 -52.49 -0.42 2.06 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 10 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 11 Si 0.87 21.64 27.53 -169.99 -4.68 16.96 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.27 -6.45 6.46 56.52 0.36 -6.08 16 15 C 0.08 1.40 1.85 -67.71 -0.13 1.27 16 16 H 0.07 1.16 4.77 -51.93 -0.25 0.91 16 17 C -0.16 -2.44 4.57 -26.73 -0.12 -2.56 16 18 C -0.11 -1.36 4.93 -26.73 -0.13 -1.50 16 19 C -0.09 -1.09 2.50 -90.62 -0.23 -1.31 16 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.15 -1.48 8.84 37.16 0.33 -1.15 16 22 C -0.08 -1.06 2.72 -90.64 -0.25 -1.31 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 C -0.15 -1.68 8.15 37.16 0.30 -1.38 16 25 C -0.11 -1.71 4.57 -26.76 -0.12 -1.84 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.18 7.85 -51.93 -0.41 0.78 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.39 5.97 -51.93 -0.31 0.08 16 34 H 0.09 1.85 7.08 -51.93 -0.37 1.49 16 35 H 0.03 0.65 5.27 -51.93 -0.27 0.37 16 36 H -0.01 -0.28 5.97 -51.93 -0.31 -0.59 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.06 1.14 6.75 -51.93 -0.35 0.79 16 39 H 0.06 0.95 6.30 -51.93 -0.33 0.62 16 40 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.50 6.43 -51.92 -0.33 0.17 16 47 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.07 1.19 6.13 -51.93 -0.32 0.87 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -28.91 347.15 -9.09 -38.00 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -9.17 Total: 0.49 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.36 Total: -22.53 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.11 Total: -38.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.68 Total: 16.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.91 -9.09 -38.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.543 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds