Wall clock time and date at job start Mon Mar 30 2020 07:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 C 1.52996 * 109.47227 * 120.00453 * 2 1 3 5 5 N 1.46902 * 109.47196 * 176.72014 * 4 2 1 6 6 C 1.46899 * 111.00124 * 164.00368 * 5 4 2 7 7 C 1.50704 * 109.46923 * 288.52020 * 6 5 4 8 8 H 1.08002 * 119.99660 * 356.72634 * 7 6 5 9 9 C 1.37874 * 120.00288 * 177.00247 * 7 6 5 10 10 N 1.31515 * 120.00354 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99711 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47087 * 89.99891 * 11 9 7 13 13 H 1.48503 * 109.47033 * 209.99767 * 11 9 7 14 14 H 1.48496 * 109.47359 * 329.99945 * 11 9 7 15 15 C 1.46904 * 110.99691 * 287.95268 * 5 4 2 16 16 H 1.08997 * 109.46976 * 55.00185 * 15 5 4 17 17 C 1.53001 * 109.47104 * 294.99948 * 15 5 4 18 18 C 1.52998 * 109.46997 * 180.02562 * 17 15 5 19 19 C 1.52998 * 109.47316 * 60.00172 * 18 17 15 20 20 H 1.08997 * 109.47189 * 60.00130 * 19 18 17 21 21 C 1.53006 * 109.47155 * 180.02562 * 19 18 17 22 22 C 1.53001 * 109.46948 * 299.99858 * 19 18 17 23 23 H 1.09000 * 109.47554 * 179.97438 * 22 19 18 24 24 C 1.53003 * 109.47209 * 300.00232 * 22 19 18 25 25 C 1.52998 * 109.47118 * 175.00175 * 15 5 4 26 26 H 1.08997 * 109.46977 * 299.99524 * 1 2 3 27 27 H 1.09000 * 109.47025 * 59.99677 * 1 2 3 28 28 H 1.08999 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47095 * 239.99885 * 2 1 3 30 30 H 1.09000 * 109.46892 * 64.99567 * 3 2 1 31 31 H 1.09006 * 109.47035 * 184.99379 * 3 2 1 32 32 H 1.08994 * 109.47187 * 304.99407 * 3 2 1 33 33 H 1.09000 * 109.47721 * 56.71704 * 4 2 1 34 34 H 1.09001 * 109.46974 * 296.71682 * 4 2 1 35 35 H 1.08998 * 109.47397 * 168.52254 * 6 5 4 36 36 H 1.09001 * 109.47575 * 48.51914 * 6 5 4 37 37 H 0.96999 * 120.00091 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47398 * 299.99979 * 17 15 5 39 39 H 1.09003 * 109.47111 * 60.00373 * 17 15 5 40 40 H 1.09003 * 109.47244 * 299.99527 * 18 17 15 41 41 H 1.09001 * 109.47274 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.46973 * 180.02562 * 21 19 18 43 43 H 1.08998 * 109.46527 * 299.99641 * 21 19 18 44 44 H 1.08998 * 109.47205 * 59.99247 * 21 19 18 45 45 H 1.08998 * 109.47258 * 180.02562 * 24 22 19 46 46 H 1.09007 * 109.46809 * 299.99707 * 24 22 19 47 47 H 1.08994 * 109.47558 * 59.99919 * 24 22 19 48 48 H 1.09001 * 109.46949 * 300.00209 * 25 15 5 49 49 H 1.09003 * 109.47490 * 59.99516 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5069 -0.7903 1.2102 6 6 4.0537 -1.1220 2.5326 7 6 3.8921 0.0597 3.4538 8 1 3.4779 0.9839 3.0788 9 6 4.2782 -0.0373 4.7738 10 7 4.1376 0.9941 5.5776 11 14 5.0023 -1.6333 5.4203 12 1 6.4772 -1.6129 5.2488 13 1 4.6734 -1.7783 6.8611 14 1 4.4320 -2.7775 4.6648 15 6 3.9619 -1.7511 0.1963 16 1 3.5277 -1.4931 -0.7695 17 6 3.5192 -3.1606 0.5944 18 6 3.9937 -4.1613 -0.4612 19 6 5.5199 -4.1146 -0.5588 20 1 5.9537 -4.3725 0.4073 21 6 5.9943 -5.1149 -1.6149 22 6 5.9625 -2.7052 -0.9568 23 1 7.0498 -2.6717 -1.0259 24 6 5.3534 -2.3432 -2.3129 25 6 5.4880 -1.7046 0.0982 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.7516 1.9298 0.9314 31 1 3.1264 1.4438 -0.0895 32 1 1.6055 1.9815 -0.8418 33 1 1.6295 -1.7306 1.2791 34 1 1.7255 -0.1747 2.1382 35 1 5.1116 -1.3665 2.4375 36 1 3.5183 -1.9784 2.9429 37 1 4.4089 0.9257 6.5064 38 1 3.9535 -3.4186 1.5602 39 1 2.4320 -3.1938 0.6642 40 1 3.5597 -3.9035 -1.4273 41 1 3.6780 -5.1654 -0.1779 42 1 7.0815 -5.0820 -1.6840 43 1 5.6788 -6.1191 -1.3317 44 1 5.5603 -4.8567 -2.5808 45 1 5.6692 -1.3393 -2.5967 46 1 5.6915 -3.0562 -3.0650 47 1 4.2662 -2.3764 -2.2435 48 1 5.8034 -0.7005 -0.1853 49 1 5.9223 -1.9626 1.0641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085025681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:26 Heat of formation + Delta-G solvation = -46.185770 kcal Electronic energy + Delta-G solvation = -22637.956470 eV Core-core repulsion = 19790.916214 eV Total energy + Delta-G solvation = -2847.040256 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05938 -38.31955 -35.66362 -34.56228 -32.61572 -32.06308 -29.57234 -28.41500 -27.87415 -26.43547 -25.41945 -23.63797 -23.06913 -21.54187 -20.24391 -19.29353 -18.77508 -16.94078 -16.70512 -16.23594 -15.87394 -15.34001 -15.21285 -14.95410 -14.86378 -14.57419 -14.42144 -14.10611 -13.84673 -13.52909 -13.29845 -13.11492 -12.91283 -12.80814 -12.74451 -12.69640 -12.58065 -12.18651 -12.12924 -11.93434 -11.84817 -11.74765 -11.57882 -11.51136 -11.37971 -11.24648 -11.01505 -10.95172 -10.74036 -10.64850 -8.78777 -8.27467 -6.27831 1.29735 1.30723 1.41069 2.32160 3.05916 3.24994 3.73042 3.81852 3.94097 4.08750 4.18244 4.22189 4.29264 4.37398 4.44318 4.47383 4.55754 4.59421 4.71545 4.76586 4.78586 4.83752 4.87758 4.89793 4.93481 5.01329 5.03710 5.10825 5.11765 5.13115 5.15934 5.16732 5.20402 5.26288 5.31613 5.33839 5.35503 5.44588 5.51489 5.54571 5.58235 5.64407 5.64988 5.73229 6.08991 6.52497 6.76969 6.80626 7.35124 8.89530 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.007813 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.645986 B = 3582.951541 C = 4969.670953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.126 4.126 4 C 0.066 3.934 5 N -0.530 5.530 6 C 0.175 3.825 7 C -0.505 4.505 8 H 0.037 0.963 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.938 3.062 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.255 1.255 15 C 0.088 3.912 16 H 0.092 0.908 17 C -0.152 4.152 18 C -0.101 4.101 19 C -0.089 4.089 20 H 0.050 0.950 21 C -0.141 4.141 22 C -0.078 4.078 23 H 0.071 0.929 24 C -0.145 4.145 25 C -0.107 4.107 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.027 0.973 36 H -0.019 1.019 37 H 0.265 0.735 38 H 0.037 0.963 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -11.426 -17.682 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.184 4.184 4 C -0.062 4.062 5 N -0.253 5.253 6 C 0.048 3.952 7 C -0.543 4.543 8 H 0.056 0.944 9 C -0.188 4.188 10 N -0.590 5.590 11 Si 0.762 3.238 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.179 1.179 15 C -0.021 4.021 16 H 0.110 0.890 17 C -0.191 4.191 18 C -0.139 4.139 19 C -0.108 4.108 20 H 0.069 0.931 21 C -0.198 4.198 22 C -0.097 4.097 23 H 0.090 0.910 24 C -0.202 4.202 25 C -0.145 4.145 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.045 0.955 36 H -0.001 1.001 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.510 -10.885 -17.629 20.725 hybrid contribution 0.081 -0.791 1.685 1.863 sum -0.429 -11.676 -15.944 19.767 Atomic orbital electron populations 1.21778 0.94139 1.01944 1.01952 1.21054 0.95782 0.96271 0.96966 1.21584 1.00937 0.95769 1.00094 1.22085 0.87697 0.97990 0.98392 1.62052 1.08683 1.48388 1.06129 1.19895 0.94685 0.93522 0.87133 1.21321 1.40160 0.98831 0.94022 0.94422 1.25761 0.96259 0.99631 0.97177 1.70050 1.50384 1.32426 1.06181 0.85854 0.79517 0.80735 0.77705 1.19149 1.20757 1.17914 1.21806 0.95546 0.88949 0.95754 0.88978 1.22205 1.00437 0.97289 0.99188 1.21511 0.95431 0.98099 0.98810 1.21146 0.95564 0.95110 0.98950 0.93149 1.21826 1.01158 0.98088 0.98733 1.21066 0.99908 0.93675 0.95080 0.91016 1.21937 1.01178 1.01411 0.95708 1.21622 0.94872 0.99421 0.98593 0.93854 0.90892 0.92212 0.90549 0.95488 0.93523 0.91751 0.95217 0.93810 0.95510 1.00137 0.92641 0.94458 0.92330 0.90301 0.91829 0.92446 0.92526 0.91283 0.93001 0.91006 0.92226 0.92484 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.19 71.98 0.66 -2.86 16 2 C -0.08 -2.48 2.92 -10.79 -0.03 -2.51 16 3 C -0.13 -4.14 9.00 71.98 0.65 -3.49 16 4 C 0.07 2.54 4.10 86.30 0.35 2.89 16 5 N -0.53 -21.69 3.87 -875.51 -3.39 -25.08 16 6 C 0.17 8.53 2.74 85.56 0.23 8.77 16 7 C -0.50 -29.83 8.88 25.60 0.23 -29.60 16 8 H 0.04 2.49 7.96 -2.91 -0.02 2.46 16 9 C 0.01 0.51 5.47 84.65 0.46 0.97 16 10 N -0.95 -60.63 13.96 21.45 0.30 -60.34 16 11 Si 0.94 45.58 27.53 68.60 1.89 47.47 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.26 -11.76 6.46 99.48 0.64 -11.12 16 15 C 0.09 2.81 1.85 44.91 0.08 2.89 16 16 H 0.09 2.65 4.77 -2.39 -0.01 2.64 16 17 C -0.15 -4.56 4.57 30.59 0.14 -4.42 16 18 C -0.10 -2.26 4.93 30.59 0.15 -2.10 16 19 C -0.09 -1.95 2.50 -10.79 -0.03 -1.98 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 C -0.14 -2.30 8.84 71.98 0.64 -1.67 16 22 C -0.08 -1.81 2.72 -10.81 -0.03 -1.84 16 23 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 24 C -0.15 -2.77 8.15 71.98 0.59 -2.18 16 25 C -0.11 -3.36 4.57 30.58 0.14 -3.22 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 2.07 6.57 -2.38 -0.02 2.05 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.69 7.85 -2.38 -0.02 1.67 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.03 1.07 5.97 -2.39 -0.01 1.06 16 34 H 0.04 2.02 7.08 -2.39 -0.02 2.00 16 35 H 0.03 1.32 5.27 -2.39 -0.01 1.31 16 36 H -0.02 -0.95 5.97 -2.39 -0.01 -0.96 16 37 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.04 1.31 6.75 -2.39 -0.02 1.29 16 39 H 0.06 1.75 6.30 -2.39 -0.02 1.74 16 40 H 0.08 1.54 6.43 -2.39 -0.02 1.52 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.98 6.43 -2.39 -0.02 0.96 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.09 6.43 -2.38 -0.02 1.08 16 47 H 0.06 1.14 4.81 -2.39 -0.01 1.13 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.04 1.46 6.13 -2.39 -0.01 1.45 16 Total: -1.00 -65.94 347.15 3.86 -62.08 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.82 Total: 16.22 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 4.24 Total: -40.35 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -3.09 Total: -85.42 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.89 Total: 47.47 kcal Total: -65.94 3.86 -62.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.893 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds