Wall clock time and date at job start Mon Mar 30 2020 07:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47003 * 2 1 4 4 C 1.53000 * 109.46937 * 119.99558 * 2 1 3 5 5 N 1.46906 * 109.47072 * 175.00313 * 4 2 1 6 6 C 1.46898 * 110.99888 * 170.00122 * 5 4 2 7 7 C 1.50697 * 109.47095 * 293.94952 * 6 5 4 8 8 H 1.07998 * 120.00028 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99832 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00052 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00153 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47096 * 89.99696 * 11 9 7 13 13 H 1.48501 * 109.47020 * 209.99773 * 11 9 7 14 14 H 1.48498 * 109.46962 * 329.99878 * 11 9 7 15 15 C 1.46902 * 110.99573 * 293.95488 * 5 4 2 16 16 H 1.09005 * 109.47428 * 55.00152 * 15 5 4 17 17 C 1.52998 * 109.47449 * 294.99873 * 15 5 4 18 18 C 1.52995 * 109.47124 * 180.02562 * 17 15 5 19 19 C 1.53001 * 109.47502 * 59.99843 * 18 17 15 20 20 H 1.08995 * 109.46869 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46955 * 59.99921 * 19 18 17 22 22 C 1.52998 * 109.47059 * 300.00196 * 19 18 17 23 23 H 1.08995 * 109.47107 * 180.02562 * 22 19 18 24 24 C 1.52999 * 109.47012 * 299.99690 * 22 19 18 25 25 C 1.52995 * 109.47124 * 59.99572 * 22 19 18 26 26 H 1.08999 * 109.47301 * 300.00534 * 1 2 3 27 27 H 1.09000 * 109.46890 * 60.00522 * 1 2 3 28 28 H 1.09001 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47353 * 240.00252 * 2 1 3 30 30 H 1.08999 * 109.47528 * 59.99605 * 3 2 1 31 31 H 1.08995 * 109.47281 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46871 * 299.99490 * 3 2 1 33 33 H 1.08993 * 109.47007 * 55.00363 * 4 2 1 34 34 H 1.08996 * 109.47340 * 295.00168 * 4 2 1 35 35 H 1.08992 * 109.47062 * 53.95734 * 6 5 4 36 36 H 1.09003 * 109.46753 * 173.95421 * 6 5 4 37 37 H 0.97000 * 119.99982 * 180.02562 * 10 9 7 38 38 H 1.09005 * 109.47033 * 300.00521 * 17 15 5 39 39 H 1.08995 * 109.47107 * 59.99993 * 17 15 5 40 40 H 1.09009 * 109.46919 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.47021 * 299.99732 * 18 17 15 42 42 H 1.09009 * 109.47091 * 60.00043 * 21 19 18 43 43 H 1.08994 * 109.47357 * 180.02562 * 21 19 18 44 44 H 1.09004 * 109.47378 * 300.00268 * 21 19 18 45 45 H 1.09004 * 109.47394 * 60.00273 * 24 22 19 46 46 H 1.08998 * 109.47507 * 179.97438 * 24 22 19 47 47 H 1.09000 * 109.47666 * 300.00400 * 24 22 19 48 48 H 1.09004 * 109.47300 * 179.97438 * 25 22 19 49 49 H 1.09005 * 109.47149 * 60.00091 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8265 1.1906 6 6 4.0498 -1.2964 2.4709 7 6 3.8077 -0.2547 3.5326 8 1 3.2989 0.6642 3.2815 9 6 4.2349 -0.4753 4.8249 10 7 4.0232 0.4336 5.7516 11 14 5.1143 -2.0651 5.2594 12 1 6.5766 -1.8896 5.0700 13 1 4.8368 -2.4129 6.6762 14 1 4.6284 -3.1565 4.3774 15 6 3.9250 -1.6996 0.0867 16 1 3.4919 -1.3397 -0.8467 17 6 3.4453 -3.1276 0.3543 18 6 3.8844 -4.0369 -0.7951 19 6 5.4106 -4.0232 -0.9020 20 1 5.7233 -4.6713 -1.7206 21 6 6.0181 -4.5281 0.4083 22 6 5.8903 -2.5952 -1.1696 23 1 6.9775 -2.5855 -1.2462 24 6 5.2828 -2.0903 -2.4799 25 6 5.4512 -1.6859 -0.0202 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9565 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6054 -1.7197 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 3.5585 -2.2266 2.7558 36 1 5.1213 -1.4680 2.3680 37 1 4.3240 0.2785 6.6607 38 1 3.8784 -3.4874 1.2876 39 1 2.3581 -3.1373 0.4308 40 1 3.5422 -5.0542 -0.6047 41 1 3.4516 -3.6772 -1.7286 42 1 5.6763 -5.5455 0.5990 43 1 7.1053 -4.5179 0.3324 44 1 5.7053 -3.8802 1.2273 45 1 4.1954 -2.1000 -2.4039 46 1 5.6241 -1.0728 -2.6704 47 1 5.5954 -2.7381 -3.2989 48 1 5.7934 -0.6686 -0.2106 49 1 5.8840 -2.0456 0.9133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085025683.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:28 Heat of formation + Delta-G solvation = -43.578718 kcal Electronic energy + Delta-G solvation = -22885.288145 eV Core-core repulsion = 20038.360939 eV Total energy + Delta-G solvation = -2846.927206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22073 -38.29946 -35.60760 -34.46346 -32.76944 -31.57625 -29.45862 -29.23217 -27.88629 -25.97100 -25.45745 -23.98374 -22.88530 -21.72531 -20.29565 -19.15002 -18.40756 -17.07660 -16.66990 -16.24682 -15.86336 -15.65797 -15.35884 -14.93926 -14.63392 -14.53799 -14.37032 -14.04119 -13.86373 -13.43430 -13.29762 -13.15173 -13.03559 -12.90578 -12.75510 -12.71326 -12.48492 -12.22806 -12.06292 -11.94560 -11.81698 -11.75561 -11.72777 -11.55316 -11.34702 -11.22959 -10.97293 -10.85257 -10.73973 -10.58476 -8.78695 -8.28137 -6.28764 1.29590 1.30534 1.41044 2.31830 3.05108 3.26471 3.75697 3.83877 3.92135 4.07085 4.18118 4.27810 4.33451 4.38545 4.43350 4.46009 4.53548 4.59407 4.67598 4.77030 4.83400 4.83785 4.87830 4.90011 4.94032 4.99074 5.05787 5.07560 5.09459 5.12900 5.15454 5.18109 5.20611 5.25398 5.31033 5.31821 5.41124 5.45391 5.50832 5.55282 5.58145 5.63801 5.66049 5.72489 6.08083 6.51293 6.76687 6.80698 7.34223 8.88700 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.008793 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.058400 B = 3183.755838 C = 4665.012102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.129 4.129 4 C 0.069 3.931 5 N -0.530 5.530 6 C 0.177 3.823 7 C -0.508 4.508 8 H 0.038 0.962 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.937 3.063 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.254 1.254 15 C 0.087 3.913 16 H 0.092 0.908 17 C -0.153 4.153 18 C -0.103 4.103 19 C -0.081 4.081 20 H 0.088 0.912 21 C -0.155 4.155 22 C -0.080 4.080 23 H 0.073 0.927 24 C -0.145 4.145 25 C -0.108 4.108 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.044 0.956 35 H -0.020 1.020 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 -9.387 -18.169 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.186 4.186 4 C -0.059 4.059 5 N -0.253 5.253 6 C 0.050 3.950 7 C -0.546 4.546 8 H 0.056 0.944 9 C -0.188 4.188 10 N -0.590 5.590 11 Si 0.761 3.239 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.178 1.178 15 C -0.021 4.021 16 H 0.110 0.890 17 C -0.192 4.192 18 C -0.141 4.141 19 C -0.099 4.099 20 H 0.106 0.894 21 C -0.212 4.212 22 C -0.099 4.099 23 H 0.091 0.909 24 C -0.202 4.202 25 C -0.146 4.146 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.063 0.937 35 H -0.002 1.002 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.003 -8.859 -18.064 20.119 hybrid contribution 0.045 -0.912 1.566 1.813 sum 0.047 -9.771 -16.497 19.174 Atomic orbital electron populations 1.21777 0.94194 1.01864 1.01991 1.21100 0.95834 0.96439 0.96942 1.21614 1.01072 0.95571 1.00378 1.22035 0.87703 0.97801 0.98364 1.62069 1.09617 1.49671 1.03905 1.19847 0.94737 0.92826 0.87569 1.21339 1.36457 1.03643 0.93195 0.94380 1.25764 0.96832 0.99903 0.96295 1.70051 1.49346 1.36709 1.02902 0.85856 0.79645 0.80659 0.77703 1.19078 1.20789 1.17812 1.21818 0.95686 0.89916 0.94715 0.88974 1.22218 1.00142 0.97395 0.99453 1.21510 0.95657 0.98884 0.98032 1.21115 0.95021 0.96107 0.97701 0.89351 1.21965 1.00815 1.00597 0.97792 1.21096 1.00026 0.94097 0.94659 0.90870 1.21888 1.01212 1.00994 0.96059 1.21650 0.94877 0.99546 0.98537 0.93817 0.90802 0.92417 0.90439 0.95123 0.93391 0.91606 0.95863 0.93749 1.00240 0.95525 0.92625 0.93802 0.92797 0.91799 0.90360 0.92390 0.92237 0.94558 0.92242 0.92926 0.91346 0.92695 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.19 71.98 0.66 -2.88 16 2 C -0.08 -2.54 2.85 -10.79 -0.03 -2.57 16 3 C -0.13 -4.08 9.08 71.98 0.65 -3.43 16 4 C 0.07 2.67 4.03 86.30 0.35 3.02 16 5 N -0.53 -21.69 3.94 -875.53 -3.45 -25.14 16 6 C 0.18 8.64 2.87 85.56 0.25 8.88 16 7 C -0.51 -29.98 8.92 25.60 0.23 -29.75 16 8 H 0.04 2.51 7.42 -2.91 -0.02 2.49 16 9 C 0.01 0.53 5.47 84.65 0.46 0.99 16 10 N -0.95 -60.58 13.96 21.45 0.30 -60.29 16 11 Si 0.94 45.50 27.47 68.60 1.88 47.38 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 14 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 15 C 0.09 2.76 1.79 44.91 0.08 2.84 16 16 H 0.09 2.65 4.46 -2.38 -0.01 2.64 16 17 C -0.15 -4.57 4.25 30.59 0.13 -4.44 16 18 C -0.10 -2.27 5.18 30.59 0.16 -2.12 16 19 C -0.08 -1.71 2.72 -10.79 -0.03 -1.74 16 20 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.15 -3.73 8.50 71.98 0.61 -3.12 16 22 C -0.08 -1.80 2.72 -10.80 -0.03 -1.83 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 C -0.14 -2.70 8.50 71.98 0.61 -2.09 16 25 C -0.11 -3.33 4.28 30.59 0.13 -3.20 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 2.09 6.24 -2.39 -0.01 2.07 16 30 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.02 0.88 6.17 -2.39 -0.01 0.86 16 34 H 0.04 2.08 6.65 -2.39 -0.02 2.06 16 35 H -0.02 -1.00 5.91 -2.39 -0.01 -1.01 16 36 H 0.03 1.31 5.29 -2.39 -0.01 1.30 16 37 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.04 1.53 4.90 -2.38 -0.01 1.52 16 39 H 0.05 1.64 6.40 -2.39 -0.02 1.62 16 40 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.08 1.50 6.43 -2.39 -0.02 1.48 16 42 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.04 1.09 4.81 -2.38 -0.01 1.08 16 45 H 0.06 1.13 4.81 -2.38 -0.01 1.12 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 49 H 0.05 1.62 4.51 -2.38 -0.01 1.61 16 Total: -1.00 -65.83 342.38 3.81 -62.02 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.84 Total: 17.45 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.23 Total: -41.43 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -3.15 Total: -85.42 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -65.83 3.81 -62.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025683.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.441 kcal (2) G-P(sol) polarization free energy of solvation -65.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds