Wall clock time and date at job start Mon Mar 30 2020 07:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46981 * 2 1 4 4 H 1.09000 * 109.46849 * 180.36448 * 3 2 1 5 5 C 1.50700 * 109.46956 * 60.36456 * 3 2 1 6 6 H 1.07999 * 120.00027 * 240.00089 * 5 3 2 7 7 C 1.37874 * 120.00086 * 59.99570 * 5 3 2 8 8 N 1.31517 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46853 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47164 * 120.00387 * 9 7 5 12 12 H 1.48504 * 109.46830 * 240.00213 * 9 7 5 13 13 N 1.46893 * 109.47372 * 300.36317 * 3 2 1 14 14 C 1.46897 * 111.00140 * 274.13746 * 13 3 2 15 15 H 1.08998 * 109.62930 * 35.34481 * 14 13 3 16 16 C 1.54246 * 109.62961 * 274.75972 * 14 13 3 17 17 C 1.45544 * 112.40512 * 160.29540 * 16 14 13 18 18 C 1.54233 * 112.40379 * 61.94415 * 17 16 14 19 19 C 1.50483 * 108.52517 * 280.00994 * 18 17 16 20 20 H 1.08997 * 108.79166 * 333.43058 * 19 18 17 21 21 C 1.52992 * 108.87844 * 214.92784 * 19 18 17 22 22 C 1.53005 * 109.47136 * 181.48564 * 21 19 18 23 23 C 1.53000 * 109.47351 * 61.48792 * 21 19 18 24 24 C 1.54069 * 112.49464 * 94.14609 * 19 18 17 25 25 C 1.50471 * 109.63361 * 155.73544 * 14 13 3 26 26 H 1.08997 * 109.47107 * 304.58674 * 1 2 3 27 27 H 1.09004 * 109.47635 * 64.58510 * 1 2 3 28 28 H 1.08999 * 109.47250 * 184.58873 * 1 2 3 29 29 H 1.08999 * 109.46764 * 240.00610 * 2 1 3 30 30 H 1.08997 * 109.47259 * 120.00558 * 2 1 3 31 31 H 0.96996 * 120.00328 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00072 * 150.18102 * 13 3 2 33 33 H 1.09001 * 108.89431 * 281.05361 * 16 14 13 34 34 H 1.08998 * 108.88977 * 39.54555 * 16 14 13 35 35 H 1.09001 * 108.88809 * 182.69222 * 17 16 14 36 36 H 1.08991 * 108.89959 * 301.28003 * 17 16 14 37 37 H 1.09000 * 109.62984 * 160.30303 * 18 17 16 38 38 H 1.09000 * 109.63290 * 39.72033 * 18 17 16 39 39 H 1.09002 * 109.47548 * 301.48644 * 21 19 18 40 40 H 1.09007 * 109.46817 * 60.00270 * 22 21 19 41 41 H 1.09002 * 109.46997 * 179.97438 * 22 21 19 42 42 H 1.08992 * 109.47073 * 300.00481 * 22 21 19 43 43 H 1.08997 * 109.47070 * 57.27556 * 23 21 19 44 44 H 1.09005 * 109.47227 * 177.27870 * 23 21 19 45 45 H 1.09001 * 109.46877 * 297.27486 * 23 21 19 46 46 H 1.09008 * 108.81272 * 79.14611 * 24 19 18 47 47 H 1.08998 * 108.81434 * 197.42463 * 24 19 18 48 48 H 1.08996 * 108.87931 * 93.08066 * 25 14 13 49 49 H 1.09004 * 108.79602 * 334.58316 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4425 -0.0065 5 6 1.5450 2.1503 1.2350 6 1 0.9235 3.0286 1.1415 7 6 1.8855 1.6766 2.4842 8 7 2.6427 0.6073 2.5981 9 14 1.2713 2.5534 4.0150 10 1 0.4441 3.7211 3.6183 11 1 0.4515 1.6179 4.8260 12 1 2.4309 3.0188 4.8177 13 7 1.5432 2.1376 -1.1949 14 6 2.4310 1.9109 -2.3431 15 1 2.8349 0.8995 -2.2996 16 6 3.5840 2.9352 -2.3166 17 6 4.7226 2.5096 -3.1172 18 6 4.3662 2.3530 -4.6096 19 6 3.6770 1.0289 -4.8002 20 1 4.0077 0.3452 -4.0184 21 6 4.0762 0.4545 -6.1608 22 6 3.3536 -0.8755 -6.3848 23 6 5.5885 0.2250 -6.1938 24 6 2.1422 1.1493 -4.7407 25 6 1.6598 2.0926 -3.6222 26 1 -0.3633 0.5833 0.8460 27 1 -0.3634 0.4410 -0.9282 28 1 -0.3634 -1.0243 0.0822 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.8825 0.2742 3.4770 32 1 1.4265 3.1239 -1.0173 33 1 3.2189 3.8877 -2.7005 34 1 3.9095 3.0736 -1.2856 35 1 5.5182 3.2482 -3.0199 36 1 5.0819 1.5525 -2.7392 37 1 5.2765 2.3815 -5.2084 38 1 3.6993 3.1599 -4.9134 39 1 3.7979 1.1561 -6.9473 40 1 2.2761 -0.7120 -6.3614 41 1 3.6376 -1.2845 -7.3544 42 1 3.6317 -1.5770 -5.5984 43 1 5.8731 -0.4387 -5.3774 44 1 5.8665 -0.2291 -7.1450 45 1 6.1033 1.1793 -6.0826 46 1 1.7817 1.5259 -5.6980 47 1 1.7182 0.1593 -4.5727 48 1 1.7713 3.1236 -3.9579 49 1 0.6052 1.8979 -3.4272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086946403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:56 Heat of formation + Delta-G solvation = -41.223426 kcal Electronic energy + Delta-G solvation = -22203.606469 eV Core-core repulsion = 19356.781397 eV Total energy + Delta-G solvation = -2846.825073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.48408 -36.65182 -34.66894 -32.46977 -31.66020 -30.67388 -28.60776 -27.39433 -25.84329 -24.18898 -23.49690 -22.82561 -20.57207 -20.32919 -19.10459 -18.50470 -16.24995 -15.58046 -14.89574 -14.85773 -14.50739 -14.05932 -13.95486 -13.67947 -13.17529 -13.04532 -12.95037 -12.70807 -12.26182 -12.15749 -11.88296 -11.66774 -11.57858 -11.32898 -11.29690 -10.99683 -10.94125 -10.84217 -10.49732 -10.47238 -10.31748 -10.23727 -10.04174 -9.90886 -9.78434 -9.69651 -9.51338 -9.31310 -8.70825 -8.43133 -7.10986 -5.98393 -4.03379 3.29792 3.38196 3.41909 4.42988 4.68622 4.83929 4.84542 5.04518 5.21698 5.30005 5.34976 5.45645 5.53571 5.54946 5.56636 5.62626 5.73016 5.75540 5.83692 5.88427 5.89634 5.99190 6.10796 6.14134 6.23156 6.29736 6.37607 6.40800 6.47085 6.51009 6.56329 6.62668 6.67966 6.70874 6.73591 6.83380 6.86762 6.95109 7.29375 7.43178 7.56405 7.79918 7.84810 7.92542 8.33702 8.49378 8.77364 9.08305 9.61505 11.07466 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.004590 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.659812 B = 6098.973029 C = 6351.314789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.095 3.905 15 H 0.070 0.930 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.081 4.081 20 H 0.069 0.931 21 C -0.093 4.093 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.106 4.106 25 C -0.108 4.108 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.011 0.989 29 H 0.008 0.992 30 H 0.085 0.915 31 H 0.259 0.741 32 H 0.328 0.672 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 0.575 -15.968 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.016 4.016 15 H 0.089 0.911 16 C -0.187 4.187 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.100 4.100 20 H 0.087 0.913 21 C -0.111 4.111 22 C -0.207 4.207 23 C -0.207 4.207 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.867 -0.059 -15.976 16.231 hybrid contribution 0.535 0.945 1.204 1.621 sum 3.402 0.886 -14.772 15.185 Atomic orbital electron populations 1.21441 0.97638 0.97281 1.01247 1.21428 0.94916 0.98458 0.99244 1.19094 0.92919 0.91288 0.85800 0.98195 1.21259 1.31313 1.11835 0.90472 0.92382 1.24879 0.95107 0.95002 0.98860 1.69897 1.36776 1.22789 1.23349 0.86565 0.78550 0.79727 0.83318 1.19803 1.21053 1.21222 1.60889 1.48327 1.15607 1.06187 1.21232 0.90700 0.98026 0.91670 0.91132 1.21239 0.97350 0.99714 1.00400 1.20394 0.98104 1.01321 0.94951 1.21508 0.99913 0.97401 0.96385 1.21035 0.95441 0.97088 0.96420 0.91296 1.21235 0.95168 0.97040 0.97701 1.21896 1.00685 0.97096 1.00977 1.21937 0.95858 1.01614 1.01289 1.21940 0.94471 0.99850 0.98106 1.21412 1.00798 0.98346 0.94078 0.92601 0.93988 0.96941 0.97320 0.89698 0.93111 0.85450 0.92945 0.91927 0.93214 0.92424 0.91883 0.92011 0.91670 0.92338 0.93348 0.92699 0.92682 0.93216 0.92370 0.92928 0.92380 0.93321 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.52 37.16 0.35 -2.34 16 2 C -0.10 -2.49 5.57 -26.73 -0.15 -2.64 16 3 C 0.22 5.33 2.01 -68.87 -0.14 5.19 16 4 H 0.00 0.01 7.23 -51.93 -0.38 -0.36 16 5 C -0.51 -13.64 7.27 -34.44 -0.25 -13.89 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.68 -14.07 5.23 -101.60 -0.53 -14.61 16 14 C 0.09 1.65 1.93 -68.33 -0.13 1.52 16 15 H 0.07 1.36 6.04 -51.93 -0.31 1.05 16 16 C -0.15 -2.39 4.56 -29.59 -0.13 -2.52 16 17 C -0.11 -1.53 5.27 -29.60 -0.16 -1.68 16 18 C -0.11 -1.36 4.98 -27.34 -0.14 -1.50 16 19 C -0.08 -0.98 1.32 -91.32 -0.12 -1.10 16 20 H 0.07 0.95 6.63 -51.93 -0.34 0.60 16 21 C -0.09 -0.95 2.36 -90.62 -0.21 -1.17 16 22 C -0.15 -1.49 8.76 37.16 0.33 -1.16 16 23 C -0.15 -1.43 8.89 37.16 0.33 -1.10 16 24 C -0.11 -1.34 4.17 -25.62 -0.11 -1.45 16 25 C -0.11 -1.61 5.04 -27.44 -0.14 -1.74 16 26 H 0.05 1.36 7.07 -51.93 -0.37 0.99 16 27 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.01 0.19 7.50 -51.93 -0.39 -0.20 16 30 H 0.08 2.31 6.06 -51.93 -0.31 2.00 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.78 7.96 -39.29 -0.31 6.47 16 33 H 0.05 0.80 7.47 -51.93 -0.39 0.41 16 34 H 0.06 1.18 7.41 -51.93 -0.38 0.79 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.86 7.46 -51.93 -0.39 0.47 16 37 H 0.06 0.67 5.55 -51.93 -0.29 0.39 16 38 H 0.06 0.74 6.98 -51.93 -0.36 0.38 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.58 6.69 -51.92 -0.35 0.24 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.54 6.13 -51.93 -0.32 0.22 16 46 H 0.05 0.60 7.98 -51.92 -0.41 0.19 16 47 H 0.06 0.77 7.32 -51.93 -0.38 0.39 16 48 H 0.05 0.68 6.63 -51.93 -0.34 0.34 16 49 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -26.78 351.05 -9.74 -36.52 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -9.34 Total: 5.15 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -0.76 Total: -23.96 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.10 Total: -39.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.78 -9.74 -36.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086946403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.706 kcal (2) G-P(sol) polarization free energy of solvation -26.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds