Wall clock time and date at job start Mon Mar 30 2020 07:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46838 * 2 1 4 4 H 1.08998 * 109.47152 * 305.28930 * 3 2 1 5 5 C 1.50700 * 109.46793 * 185.29796 * 3 2 1 6 6 H 1.08012 * 119.99794 * 244.99372 * 5 3 2 7 7 C 1.37871 * 120.00852 * 64.99059 * 5 3 2 8 8 N 1.31520 * 119.99547 * 9.76328 * 7 5 3 9 9 Si 1.86795 * 120.00696 * 189.76202 * 7 5 3 10 10 H 1.48501 * 109.47129 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47051 * 60.00337 * 9 7 5 12 12 H 1.48493 * 109.47187 * 299.99922 * 9 7 5 13 13 N 1.46895 * 109.47341 * 65.29788 * 3 2 1 14 14 C 1.46902 * 110.99819 * 206.55815 * 13 3 2 15 15 H 1.08995 * 109.63014 * 326.51617 * 14 13 3 16 16 C 1.50480 * 109.62732 * 86.90168 * 14 13 3 17 17 C 1.54071 * 112.49202 * 213.85678 * 16 14 13 18 18 C 1.54055 * 112.81940 * 318.28254 * 17 16 14 19 19 C 1.50470 * 112.50023 * 318.28401 * 18 17 16 20 20 H 1.09006 * 109.62938 * 334.44093 * 19 18 17 21 21 C 1.53004 * 109.63060 * 214.06181 * 19 18 17 22 22 C 1.53001 * 109.47507 * 63.70832 * 21 19 18 23 23 C 1.52997 * 109.47214 * 183.71538 * 21 19 18 24 24 C 1.54239 * 108.51968 * 94.15431 * 19 18 17 25 25 C 1.45538 * 112.40423 * 280.00884 * 24 19 18 26 26 H 1.09009 * 109.47381 * 303.67588 * 1 2 3 27 27 H 1.08997 * 109.47711 * 63.67546 * 1 2 3 28 28 H 1.09002 * 109.46870 * 183.67905 * 1 2 3 29 29 H 1.08994 * 109.47359 * 239.99830 * 2 1 3 30 30 H 1.09000 * 109.47283 * 119.99487 * 2 1 3 31 31 H 0.97005 * 119.99861 * 356.55989 * 8 7 5 32 32 H 1.00905 * 110.99626 * 330.51020 * 13 3 2 33 33 H 1.08997 * 108.87722 * 334.63528 * 16 14 13 34 34 H 1.08994 * 108.87831 * 93.17874 * 16 14 13 35 35 H 1.09002 * 108.80928 * 79.14297 * 17 16 14 36 36 H 1.09002 * 108.81146 * 197.52540 * 17 16 14 37 37 H 1.08998 * 108.88154 * 79.06156 * 18 17 16 38 38 H 1.09001 * 108.87744 * 197.60619 * 18 17 16 39 39 H 1.09006 * 109.46880 * 303.71057 * 21 19 18 40 40 H 1.08994 * 109.47075 * 183.33402 * 22 21 19 41 41 H 1.08997 * 109.47239 * 303.34362 * 22 21 19 42 42 H 1.09002 * 109.46580 * 63.33805 * 22 21 19 43 43 H 1.08996 * 109.47353 * 59.99745 * 23 21 19 44 44 H 1.09001 * 109.47207 * 179.97438 * 23 21 19 45 45 H 1.09006 * 109.46804 * 299.99566 * 23 21 19 46 46 H 1.08996 * 108.89381 * 40.76570 * 24 19 18 47 47 H 1.09000 * 108.89548 * 159.35710 * 24 19 18 48 48 H 1.09001 * 108.90123 * 301.18135 * 25 24 19 49 49 H 1.09000 * 108.89706 * 182.68650 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9830 -0.8388 5 6 3.5412 1.4446 -0.1312 6 1 4.1535 1.8144 0.6781 7 6 4.1332 0.9743 -1.2841 8 7 3.3957 0.7046 -2.3391 9 14 5.9827 0.7201 -1.3478 10 1 6.3666 0.2119 -2.6893 11 1 6.3829 -0.2653 -0.3115 12 1 6.6689 2.0122 -1.0936 13 7 1.6574 2.0971 1.2582 14 6 1.5418 3.5509 1.0813 15 1 2.2726 3.8897 0.3471 16 6 0.1547 3.8938 0.6092 17 6 0.1395 5.1014 -0.3475 18 6 1.0799 6.2344 0.1054 19 6 1.0195 6.4742 1.5897 20 1 0.0520 6.1507 1.9738 21 6 1.2146 7.9641 1.8781 22 6 0.0584 8.7578 1.2664 23 6 1.2452 8.1910 3.3908 24 6 2.1430 5.6602 2.2636 25 6 1.7893 4.2582 2.4294 26 1 -0.3634 0.5699 0.8553 27 1 -0.3634 0.4557 -0.9210 28 1 -0.3633 -1.0256 0.0659 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.4305 0.7888 -2.2905 32 1 0.8007 1.7079 1.6224 33 1 -0.2660 3.0304 0.0940 34 1 -0.4657 4.1240 1.4752 35 1 0.4436 4.7676 -1.3396 36 1 -0.8767 5.4917 -0.4047 37 1 2.1025 5.9748 -0.1684 38 1 0.7996 7.1528 -0.4104 39 1 2.1559 8.2984 1.4415 40 1 0.2277 9.8234 1.4205 41 1 0.0000 8.5498 0.1981 42 1 -0.8762 8.4654 1.7451 43 1 2.0689 7.6256 3.8265 44 1 1.3847 9.2523 3.5963 45 1 0.3040 7.8567 3.8274 46 1 3.0429 5.7274 1.6522 47 1 2.3500 6.0889 3.2441 48 1 0.8851 4.1914 3.0345 49 1 2.5995 3.7492 2.9515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086946407.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:58 Heat of formation + Delta-G solvation = -41.492656 kcal Electronic energy + Delta-G solvation = -22251.880816 eV Core-core repulsion = 19405.044069 eV Total energy + Delta-G solvation = -2846.836747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.52530 -36.84985 -34.72368 -32.36954 -32.03508 -31.05099 -28.64216 -27.33942 -25.78388 -24.31387 -23.42745 -22.53516 -20.72779 -20.04999 -19.58626 -18.89934 -16.61320 -15.70778 -14.88681 -14.74241 -14.35647 -14.26356 -14.13908 -13.67865 -13.58770 -13.14565 -12.91704 -12.54392 -12.31437 -12.27921 -12.13122 -11.82777 -11.64460 -11.44885 -11.33499 -11.14089 -10.85502 -10.69612 -10.67427 -10.44382 -10.38274 -10.20883 -10.13962 -10.02860 -9.92672 -9.84582 -9.69515 -9.42739 -8.60439 -8.26176 -7.17399 -6.23277 -3.92952 3.48715 3.51136 3.69394 4.59120 4.68794 4.76719 4.89653 5.01660 5.15814 5.30395 5.41339 5.43982 5.51240 5.53489 5.59216 5.62951 5.66895 5.72172 5.78032 5.85582 5.91867 5.93898 5.98792 6.04644 6.04880 6.14363 6.17005 6.19228 6.28941 6.39518 6.42395 6.47882 6.51150 6.58058 6.62054 6.67363 6.74602 6.79381 6.86561 6.91896 7.00306 7.24703 7.46425 8.15470 8.25669 8.57742 8.78349 9.03263 9.76501 11.11334 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020306 B = 0.005232 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.597168 B = 5349.995194 C = 5901.630236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.209 3.791 4 H -0.006 1.006 5 C -0.573 4.573 6 H 0.054 0.946 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.677 5.677 14 C 0.099 3.901 15 H 0.083 0.917 16 C -0.142 4.142 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.077 4.077 20 H 0.068 0.932 21 C -0.092 4.092 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.114 4.114 25 C -0.105 4.105 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.314 0.686 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.045 0.955 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 12.092 7.839 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.101 3.899 4 H 0.012 0.988 5 C -0.612 4.612 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.217 1.217 13 N -0.306 5.306 14 C -0.012 4.012 15 H 0.101 0.899 16 C -0.181 4.181 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.096 4.096 20 H 0.087 0.913 21 C -0.110 4.110 22 C -0.206 4.206 23 C -0.206 4.206 24 C -0.151 4.151 25 C -0.143 4.143 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.277 11.647 7.068 14.610 hybrid contribution -2.204 0.434 0.460 2.293 sum -7.482 12.081 7.528 16.081 Atomic orbital electron populations 1.21903 0.98972 0.99935 1.00176 1.21852 0.91960 1.00893 1.02009 1.19241 0.96180 0.89011 0.85448 0.98826 1.21954 0.90856 1.44569 1.03828 0.92778 1.25724 1.06663 0.94357 0.92042 1.70816 1.07532 1.47729 1.29351 0.83583 0.74719 0.76461 0.75743 1.21067 1.21525 1.21688 1.60704 1.36349 1.01897 1.31690 1.21169 0.94750 0.89213 0.96030 0.89892 1.22173 0.99527 0.97625 0.98809 1.21801 0.98608 0.95179 0.99209 1.21484 1.00576 0.97886 0.95578 1.20949 0.99343 0.93533 0.95742 0.91316 1.21148 0.98807 0.95349 0.95742 1.21912 0.98332 0.99291 1.01080 1.21927 1.01964 1.00865 0.95874 1.20632 0.98227 0.95671 1.00608 1.20433 1.01323 0.94777 0.97807 0.93919 0.93843 0.94059 0.91239 0.92966 0.92083 0.86852 0.92723 0.92953 0.92431 0.93234 0.91854 0.92247 0.91402 0.93177 0.92278 0.92946 0.92044 0.93260 0.92927 0.92179 0.92150 0.93615 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.80 37.16 0.36 -2.48 16 2 C -0.13 -2.95 5.20 -26.73 -0.14 -3.09 16 3 C 0.21 5.14 1.31 -68.87 -0.09 5.05 16 4 H -0.01 -0.15 6.90 -51.93 -0.36 -0.51 16 5 C -0.57 -16.04 8.51 -34.44 -0.29 -16.33 16 6 H 0.05 1.57 7.83 -52.48 -0.41 1.16 16 7 C 0.02 0.44 5.15 -17.82 -0.09 0.35 16 8 N -0.92 -27.34 13.03 55.43 0.72 -26.62 16 9 Si 1.07 25.54 29.91 -169.99 -5.09 20.46 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -14.29 5.97 -101.60 -0.61 -14.89 16 14 C 0.10 1.84 1.94 -68.32 -0.13 1.71 16 15 H 0.08 1.82 6.54 -51.93 -0.34 1.48 16 16 C -0.14 -2.31 4.62 -27.43 -0.13 -2.44 16 17 C -0.11 -1.62 5.85 -25.62 -0.15 -1.77 16 18 C -0.12 -1.60 4.76 -27.44 -0.13 -1.73 16 19 C -0.08 -0.95 1.44 -91.23 -0.13 -1.08 16 20 H 0.07 0.87 6.97 -51.93 -0.36 0.51 16 21 C -0.09 -0.97 2.46 -90.62 -0.22 -1.19 16 22 C -0.15 -1.42 9.03 37.16 0.34 -1.09 16 23 C -0.15 -1.43 8.85 37.16 0.33 -1.10 16 24 C -0.11 -1.56 4.62 -29.60 -0.14 -1.69 16 25 C -0.11 -1.67 4.90 -29.60 -0.14 -1.82 16 26 H 0.04 0.73 6.35 -51.92 -0.33 0.40 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.77 6.35 -51.93 -0.33 1.44 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.27 7.95 6.07 -40.82 -0.25 7.71 16 32 H 0.31 6.09 6.11 -39.29 -0.24 5.85 16 33 H 0.05 0.96 7.54 -51.93 -0.39 0.57 16 34 H 0.05 0.77 6.63 -51.93 -0.34 0.43 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.97 6.64 -51.93 -0.34 0.62 16 38 H 0.06 0.72 5.64 -51.93 -0.29 0.43 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.57 6.10 -51.93 -0.32 0.26 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.60 6.00 -51.93 -0.31 0.29 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.90 7.47 -51.93 -0.39 0.51 16 47 H 0.06 0.74 5.51 -51.93 -0.29 0.45 16 48 H 0.05 0.67 7.47 -51.93 -0.39 0.29 16 49 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -28.67 350.36 -9.58 -38.25 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -9.13 Total: 6.24 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -0.76 Total: -28.71 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.12 Total: -41.52 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.09 Total: 20.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.67 -9.58 -38.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086946407.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.240 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds