Wall clock time and date at job start Mon Mar 30 2020 07:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46838 * 2 1 4 4 H 1.08998 * 109.47152 * 305.28930 * 3 2 1 5 5 C 1.50700 * 109.46793 * 185.29796 * 3 2 1 6 6 H 1.08012 * 119.99794 * 244.99372 * 5 3 2 7 7 C 1.37871 * 120.00852 * 64.99059 * 5 3 2 8 8 N 1.31520 * 119.99547 * 9.76328 * 7 5 3 9 9 Si 1.86795 * 120.00696 * 189.76202 * 7 5 3 10 10 H 1.48501 * 109.47129 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47051 * 60.00337 * 9 7 5 12 12 H 1.48493 * 109.47187 * 299.99922 * 9 7 5 13 13 N 1.46895 * 109.47341 * 65.29788 * 3 2 1 14 14 C 1.46902 * 110.99819 * 206.55815 * 13 3 2 15 15 H 1.08995 * 109.63014 * 326.51617 * 14 13 3 16 16 C 1.50480 * 109.62732 * 86.90168 * 14 13 3 17 17 C 1.54071 * 112.49202 * 213.85678 * 16 14 13 18 18 C 1.54055 * 112.81940 * 318.28254 * 17 16 14 19 19 C 1.50470 * 112.50023 * 318.28401 * 18 17 16 20 20 H 1.09006 * 109.62938 * 334.44093 * 19 18 17 21 21 C 1.53004 * 109.63060 * 214.06181 * 19 18 17 22 22 C 1.53001 * 109.47507 * 63.70832 * 21 19 18 23 23 C 1.52997 * 109.47214 * 183.71538 * 21 19 18 24 24 C 1.54239 * 108.51968 * 94.15431 * 19 18 17 25 25 C 1.45538 * 112.40423 * 280.00884 * 24 19 18 26 26 H 1.09009 * 109.47381 * 303.67588 * 1 2 3 27 27 H 1.08997 * 109.47711 * 63.67546 * 1 2 3 28 28 H 1.09002 * 109.46870 * 183.67905 * 1 2 3 29 29 H 1.08994 * 109.47359 * 239.99830 * 2 1 3 30 30 H 1.09000 * 109.47283 * 119.99487 * 2 1 3 31 31 H 0.97005 * 119.99861 * 356.55989 * 8 7 5 32 32 H 1.00905 * 110.99626 * 330.51020 * 13 3 2 33 33 H 1.08997 * 108.87722 * 334.63528 * 16 14 13 34 34 H 1.08994 * 108.87831 * 93.17874 * 16 14 13 35 35 H 1.09002 * 108.80928 * 79.14297 * 17 16 14 36 36 H 1.09002 * 108.81146 * 197.52540 * 17 16 14 37 37 H 1.08998 * 108.88154 * 79.06156 * 18 17 16 38 38 H 1.09001 * 108.87744 * 197.60619 * 18 17 16 39 39 H 1.09006 * 109.46880 * 303.71057 * 21 19 18 40 40 H 1.08994 * 109.47075 * 183.33402 * 22 21 19 41 41 H 1.08997 * 109.47239 * 303.34362 * 22 21 19 42 42 H 1.09002 * 109.46580 * 63.33805 * 22 21 19 43 43 H 1.08996 * 109.47353 * 59.99745 * 23 21 19 44 44 H 1.09001 * 109.47207 * 179.97438 * 23 21 19 45 45 H 1.09006 * 109.46804 * 299.99566 * 23 21 19 46 46 H 1.08996 * 108.89381 * 40.76570 * 24 19 18 47 47 H 1.09000 * 108.89548 * 159.35710 * 24 19 18 48 48 H 1.09001 * 108.90123 * 301.18135 * 25 24 19 49 49 H 1.09000 * 108.89706 * 182.68650 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9830 -0.8388 5 6 3.5412 1.4446 -0.1312 6 1 4.1535 1.8144 0.6781 7 6 4.1332 0.9743 -1.2841 8 7 3.3957 0.7046 -2.3391 9 14 5.9827 0.7201 -1.3478 10 1 6.3666 0.2119 -2.6893 11 1 6.3829 -0.2653 -0.3115 12 1 6.6689 2.0122 -1.0936 13 7 1.6574 2.0971 1.2582 14 6 1.5418 3.5509 1.0813 15 1 2.2726 3.8897 0.3471 16 6 0.1547 3.8938 0.6092 17 6 0.1395 5.1014 -0.3475 18 6 1.0799 6.2344 0.1054 19 6 1.0195 6.4742 1.5897 20 1 0.0520 6.1507 1.9738 21 6 1.2146 7.9641 1.8781 22 6 0.0584 8.7578 1.2664 23 6 1.2452 8.1910 3.3908 24 6 2.1430 5.6602 2.2636 25 6 1.7893 4.2582 2.4294 26 1 -0.3634 0.5699 0.8553 27 1 -0.3634 0.4557 -0.9210 28 1 -0.3633 -1.0256 0.0659 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.4305 0.7888 -2.2905 32 1 0.8007 1.7079 1.6224 33 1 -0.2660 3.0304 0.0940 34 1 -0.4657 4.1240 1.4752 35 1 0.4436 4.7676 -1.3396 36 1 -0.8767 5.4917 -0.4047 37 1 2.1025 5.9748 -0.1684 38 1 0.7996 7.1528 -0.4104 39 1 2.1559 8.2984 1.4415 40 1 0.2277 9.8234 1.4205 41 1 0.0000 8.5498 0.1981 42 1 -0.8762 8.4654 1.7451 43 1 2.0689 7.6256 3.8265 44 1 1.3847 9.2523 3.5963 45 1 0.3040 7.8567 3.8274 46 1 3.0429 5.7274 1.6522 47 1 2.3500 6.0889 3.2441 48 1 0.8851 4.1914 3.0345 49 1 2.5995 3.7492 2.9515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086946407.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:57 Heat of formation + Delta-G solvation = -56.498258 kcal Electronic energy + Delta-G solvation = -22252.531508 eV Core-core repulsion = 19405.044069 eV Total energy + Delta-G solvation = -2847.487439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76837 -38.40349 -36.15731 -34.04431 -33.49496 -32.54847 -30.05953 -28.22054 -27.59799 -25.49469 -25.14760 -24.13572 -21.97510 -21.56004 -20.99405 -20.10962 -18.73255 -17.03019 -16.57119 -15.87027 -15.68077 -15.62058 -15.47097 -15.34156 -14.90228 -14.43803 -14.24665 -14.17746 -13.88976 -13.46357 -13.25570 -13.06637 -12.91061 -12.87121 -12.60125 -12.52034 -12.41435 -12.23544 -11.98540 -11.94752 -11.85935 -11.76478 -11.67029 -11.54395 -11.27274 -11.05880 -10.96036 -10.72452 -10.62492 -10.42654 -9.01818 -8.49140 -6.22495 1.51464 1.59066 1.78579 2.57967 3.21890 3.45604 3.64989 3.82464 3.88875 4.10883 4.13118 4.23310 4.28099 4.32939 4.35981 4.38125 4.48419 4.51664 4.60341 4.65352 4.70613 4.79804 4.86096 4.87445 4.92628 4.99366 5.04603 5.05959 5.10370 5.11466 5.17433 5.19563 5.20834 5.27516 5.32627 5.37444 5.40999 5.45581 5.51031 5.53338 5.60363 5.63794 5.70089 6.08625 6.21360 6.58995 6.66684 7.03858 7.54520 8.82439 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020306 B = 0.005232 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.597168 B = 5349.995194 C = 5901.630236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.217 3.783 4 H -0.038 1.038 5 C -0.585 4.585 6 H 0.037 0.963 7 C -0.031 4.031 8 N -0.938 5.938 9 Si 1.109 2.891 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.100 3.900 15 H 0.040 0.960 16 C -0.136 4.136 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.068 4.068 20 H 0.076 0.924 21 C -0.090 4.090 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.112 4.112 25 C -0.095 4.095 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.257 0.743 32 H 0.326 0.674 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.038 0.962 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 13.338 9.590 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.108 3.892 4 H -0.020 1.020 5 C -0.624 4.624 6 H 0.056 0.944 7 C -0.229 4.229 8 N -0.576 5.576 9 Si 0.932 3.068 10 H -0.210 1.210 11 H -0.198 1.198 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.010 4.010 15 H 0.058 0.942 16 C -0.175 4.175 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.087 4.087 20 H 0.094 0.906 21 C -0.108 4.108 22 C -0.204 4.204 23 C -0.205 4.205 24 C -0.150 4.150 25 C -0.133 4.133 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.478 12.906 8.841 16.932 hybrid contribution -1.841 0.073 -0.069 1.844 sum -8.319 12.980 8.772 17.738 Atomic orbital electron populations 1.21772 0.95336 1.01866 1.00800 1.21676 0.95209 0.98998 1.00226 1.18991 0.94309 0.90028 0.85855 1.02017 1.22244 0.92812 1.44095 1.03260 0.94418 1.27021 1.10329 0.93769 0.91742 1.70923 1.07084 1.49457 1.30133 0.83028 0.70377 0.77292 0.76120 1.20978 1.19837 1.20329 1.60620 1.37314 1.03362 1.29800 1.21151 0.95201 0.87804 0.96823 0.94198 1.22055 0.97887 0.97681 0.99838 1.21789 1.00305 0.95089 0.97453 1.21464 0.98598 0.98024 0.97052 1.20878 0.98815 0.94779 0.94206 0.90587 1.21123 0.99107 0.93854 0.96760 1.21894 0.97980 0.99826 1.00729 1.21908 1.02093 1.01674 0.94777 1.20611 0.98037 0.94747 1.01596 1.20351 1.01599 0.95471 0.95869 0.91973 0.94325 0.91619 0.94349 0.93271 0.93270 0.85470 0.94344 0.90371 0.95064 0.90664 0.94650 0.90486 0.92017 0.92037 0.92657 0.92358 0.92419 0.92096 0.92367 0.94303 0.90002 0.91463 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.80 71.98 0.71 -4.41 16 2 C -0.12 -5.72 5.20 30.59 0.16 -5.56 16 3 C 0.22 11.05 1.31 44.17 0.06 11.11 16 4 H -0.04 -2.13 6.90 -2.39 -0.02 -2.15 16 5 C -0.59 -33.98 8.51 25.60 0.22 -33.76 16 6 H 0.04 2.26 7.83 -2.90 -0.02 2.24 16 7 C -0.03 -1.80 5.15 84.65 0.44 -1.36 16 8 N -0.94 -57.85 13.03 21.45 0.28 -57.57 16 9 Si 1.11 52.25 29.91 68.60 2.05 54.30 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.68 -29.13 5.97 -475.34 -2.84 -31.96 16 14 C 0.10 3.80 1.94 44.52 0.09 3.89 16 15 H 0.04 1.85 6.54 -2.39 -0.02 1.84 16 16 C -0.14 -4.32 4.62 30.14 0.14 -4.18 16 17 C -0.11 -3.16 5.85 31.31 0.18 -2.98 16 18 C -0.11 -3.04 4.76 30.13 0.14 -2.89 16 19 C -0.07 -1.55 1.44 -11.19 -0.02 -1.57 16 20 H 0.08 1.67 6.97 -2.38 -0.02 1.65 16 21 C -0.09 -1.67 2.46 -10.79 -0.03 -1.70 16 22 C -0.15 -2.37 9.03 71.98 0.65 -1.72 16 23 C -0.15 -2.38 8.85 71.98 0.64 -1.74 16 24 C -0.11 -2.98 4.62 28.74 0.13 -2.84 16 25 C -0.09 -2.94 4.90 28.74 0.14 -2.80 16 26 H 0.06 2.01 6.35 -2.38 -0.02 1.99 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 2.01 6.35 -2.39 -0.02 2.00 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.26 16.00 6.07 -92.70 -0.56 15.44 16 32 H 0.33 12.41 6.11 -89.69 -0.55 11.86 16 33 H 0.04 1.34 7.54 -2.39 -0.02 1.33 16 34 H 0.08 2.09 6.63 -2.39 -0.02 2.08 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.03 1.13 6.64 -2.39 -0.02 1.11 16 38 H 0.08 1.77 5.64 -2.39 -0.01 1.76 16 39 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 0.93 6.10 -2.39 -0.01 0.91 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.97 6.00 -2.39 -0.01 0.95 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.04 1.19 7.47 -2.39 -0.02 1.17 16 47 H 0.08 1.84 5.51 -2.39 -0.01 1.83 16 48 H 0.07 1.81 7.47 -2.39 -0.02 1.79 16 49 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 Total: -1.00 -64.48 350.36 3.69 -60.79 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.55 Total: 26.97 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 3.65 Total: -52.53 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -2.56 Total: -89.54 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Total: -64.48 3.69 -60.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086946407.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.290 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds