Wall clock time and date at job start Mon Mar 30 2020 07:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47496 * 2 1 4 4 C 1.52994 * 109.47496 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.77933 * 55.47671 * 4 3 2 6 6 C 1.54245 * 109.62869 * 295.00168 * 4 3 2 7 7 C 1.45539 * 112.40282 * 160.30724 * 6 4 3 8 8 C 1.54245 * 112.41047 * 61.93936 * 7 6 4 9 9 C 1.50480 * 108.51028 * 280.00049 * 8 7 6 10 10 H 1.08992 * 108.88100 * 333.37654 * 9 8 7 11 11 N 1.46897 * 108.87360 * 214.82735 * 9 8 7 12 12 C 1.46903 * 111.00000 * 88.84078 * 11 9 8 13 13 H 1.09002 * 109.46629 * 16.20456 * 12 11 9 14 14 C 1.50703 * 109.47112 * 256.20805 * 12 11 9 15 15 H 1.07991 * 119.99730 * 354.40700 * 14 12 11 16 16 C 1.37877 * 119.99987 * 174.40664 * 14 12 11 17 17 N 1.31520 * 120.00009 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00028 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47083 * 60.00046 * 18 16 14 20 20 H 1.48500 * 109.47081 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47043 * 299.99991 * 18 16 14 22 22 C 1.52993 * 109.47360 * 136.20441 * 12 11 9 23 23 C 1.52996 * 109.47389 * 296.31073 * 22 12 11 24 24 C 1.54069 * 112.49306 * 94.15476 * 9 8 7 25 25 C 1.50466 * 109.62978 * 175.96355 * 4 3 2 26 26 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46917 * 300.00098 * 1 2 3 28 28 H 1.08993 * 109.47214 * 59.99741 * 1 2 3 29 29 H 1.08993 * 109.47173 * 239.99880 * 2 1 3 30 30 H 1.09003 * 109.47408 * 119.99772 * 2 1 3 31 31 H 1.08998 * 109.46709 * 60.00144 * 3 2 1 32 32 H 1.08994 * 109.46581 * 300.00400 * 3 2 1 33 33 H 1.08998 * 108.89638 * 39.55893 * 6 4 3 34 34 H 1.08991 * 108.82005 * 281.00994 * 6 4 3 35 35 H 1.09005 * 108.89741 * 301.18776 * 7 6 4 36 36 H 1.08999 * 108.89783 * 182.69491 * 7 6 4 37 37 H 1.08990 * 109.63511 * 160.29289 * 8 7 6 38 38 H 1.08995 * 109.62828 * 39.70166 * 8 7 6 39 39 H 1.00901 * 110.99922 * 212.78948 * 11 9 8 40 40 H 0.96994 * 120.00215 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47381 * 56.31314 * 22 12 11 42 42 H 1.08999 * 109.47159 * 176.31125 * 22 12 11 43 43 H 1.09002 * 109.47754 * 185.11228 * 23 22 12 44 44 H 1.09008 * 109.47063 * 305.11445 * 23 22 12 45 45 H 1.09005 * 109.47312 * 65.11032 * 23 22 12 46 46 H 1.08997 * 108.81413 * 79.14625 * 24 9 8 47 47 H 1.09001 * 108.80712 * 197.41648 * 24 9 8 48 48 H 1.09003 * 108.87695 * 334.63922 * 25 4 3 49 49 H 1.09001 * 108.87790 * 93.08083 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9385 0.8613 -0.8460 6 6 4.0887 0.8283 1.3157 7 6 5.4682 0.3764 1.2112 8 6 6.4433 1.5308 0.9016 9 6 6.3794 1.8278 -0.5722 10 1 6.0746 0.9248 -1.1011 11 7 7.7165 2.2213 -1.0361 12 6 8.4954 1.0478 -1.4534 13 1 7.8258 0.1998 -1.5974 14 6 9.5084 0.7128 -0.3890 15 1 9.6297 1.3630 0.4647 16 6 10.2803 -0.4237 -0.5052 17 7 10.1322 -1.2158 -1.5446 18 14 11.5364 -0.8385 0.8137 19 1 10.8474 -1.0047 2.1187 20 1 12.2303 -2.1019 0.4565 21 1 12.5295 0.2608 0.9146 22 6 9.2180 1.3558 -2.7663 23 6 8.1875 1.6057 -3.8692 24 6 5.3865 2.9584 -0.9032 25 6 4.0754 2.8562 -0.1004 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.4585 -0.0204 1.5817 34 1 4.0216 1.5780 2.1040 35 1 5.5371 -0.3665 0.4166 36 1 5.7596 -0.0887 2.1529 37 1 7.4572 1.2364 1.1721 38 1 6.1531 2.4166 1.4665 39 1 7.6558 2.8987 -1.7814 40 1 10.6749 -2.0156 -1.6262 41 1 9.8379 2.2435 -2.6403 42 1 9.8472 0.5095 -3.0419 43 1 8.6997 1.7353 -4.8226 44 1 7.5102 0.7539 -3.9334 45 1 7.6181 2.5058 -3.6373 46 1 5.8587 3.9162 -0.6847 47 1 5.1514 2.9195 -1.9668 48 1 3.3159 3.4689 -0.5861 49 1 4.2465 3.2414 0.9048 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086946409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:59 Heat of formation + Delta-G solvation = -43.774835 kcal Electronic energy + Delta-G solvation = -21981.358485 eV Core-core repulsion = 19134.422775 eV Total energy + Delta-G solvation = -2846.935710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.24133 -36.47525 -34.54954 -32.57185 -31.95334 -31.40924 -29.03018 -26.70046 -26.11894 -24.01015 -22.97517 -22.17715 -21.17365 -20.06223 -19.46784 -18.60922 -16.15785 -15.48968 -15.23663 -14.86327 -14.54801 -14.16141 -13.91207 -13.64026 -13.41974 -13.14204 -12.78278 -12.65359 -12.58279 -12.07529 -12.01251 -11.74443 -11.50870 -11.49523 -11.15480 -11.06536 -10.84226 -10.74198 -10.63074 -10.43913 -10.26032 -10.18479 -10.05641 -9.92394 -9.80962 -9.69143 -9.57199 -9.31794 -8.98099 -8.26468 -7.13218 -5.90137 -3.91842 3.38212 3.42186 3.45763 4.50527 4.72141 4.78575 4.95154 5.05103 5.11234 5.32155 5.38384 5.40904 5.49379 5.55635 5.63152 5.70990 5.76228 5.79768 5.85253 5.92857 5.96010 5.99031 6.11530 6.14096 6.16224 6.17424 6.25103 6.31728 6.36465 6.39587 6.52130 6.52877 6.56815 6.57933 6.74366 6.82044 6.83815 7.00870 7.08479 7.18443 7.30440 7.55600 7.76908 7.99880 8.40239 8.55615 8.83842 9.16475 9.72331 11.16506 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.004908 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.052675 B = 5703.803166 C = 6231.598606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.111 4.111 4 C -0.087 4.087 5 H 0.072 0.928 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.103 4.103 9 C 0.101 3.899 10 H 0.034 0.966 11 N -0.686 5.686 12 C 0.219 3.781 13 H 0.015 0.985 14 C -0.485 4.485 15 H 0.061 0.939 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.129 4.129 23 C -0.149 4.149 24 C -0.122 4.122 25 C -0.106 4.106 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.316 0.684 40 H 0.258 0.742 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 4.777 1.777 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.149 4.149 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.146 4.146 7 C -0.158 4.158 8 C -0.141 4.141 9 C -0.010 4.010 10 H 0.052 0.948 11 N -0.317 5.317 12 C 0.111 3.889 13 H 0.032 0.968 14 C -0.524 4.524 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.168 4.168 23 C -0.207 4.207 24 C -0.160 4.160 25 C -0.144 4.144 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.907 4.613 2.330 15.778 hybrid contribution 0.324 -0.572 -0.262 0.708 sum -14.583 4.041 2.068 15.274 Atomic orbital electron populations 1.21779 0.96363 1.01287 1.01481 1.21621 0.95243 0.97414 1.02323 1.21686 0.95358 0.96397 1.01436 1.20961 0.94037 0.96876 0.98686 0.90936 1.20602 0.97002 1.00180 0.96779 1.20460 0.94710 0.99138 1.01528 1.21390 1.00610 0.96417 0.95667 1.21300 0.88420 0.95099 0.96139 0.94848 1.60962 1.13164 1.16081 1.41512 1.19268 0.91845 0.86180 0.91558 0.96752 1.21218 1.18217 1.06570 1.06429 0.92071 1.24968 0.97492 0.96419 0.95719 1.69908 1.40960 1.14164 1.28869 0.86678 0.81717 0.77389 0.82280 1.20435 1.21611 1.20422 1.21887 0.98153 1.01615 0.95158 1.21881 0.99984 0.99650 0.99192 1.22179 0.95181 0.99775 0.98859 1.21320 0.96380 0.96216 1.00510 0.93040 0.92984 0.92997 0.92077 0.91631 0.92306 0.92354 0.92660 0.92775 0.92378 0.92870 0.89242 0.93141 0.86688 0.93203 0.94099 0.89363 0.94460 0.93880 0.94603 0.91877 0.93287 0.92893 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.15 0.37 -0.94 16 2 C -0.13 -1.29 5.73 -26.73 -0.15 -1.44 16 3 C -0.11 -1.16 4.51 -26.73 -0.12 -1.28 16 4 C -0.09 -1.09 1.87 -91.24 -0.17 -1.26 16 5 H 0.07 1.03 6.98 -51.93 -0.36 0.67 16 6 C -0.11 -1.42 4.64 -29.60 -0.14 -1.55 16 7 C -0.12 -1.93 5.26 -29.60 -0.16 -2.08 16 8 C -0.10 -1.86 5.25 -27.34 -0.14 -2.01 16 9 C 0.10 1.84 2.02 -68.41 -0.14 1.70 16 10 H 0.03 0.68 5.67 -51.93 -0.29 0.38 16 11 N -0.69 -14.40 6.02 -101.70 -0.61 -15.01 16 12 C 0.22 5.39 1.95 -68.87 -0.13 5.25 16 13 H 0.01 0.41 7.08 -51.93 -0.37 0.04 16 14 C -0.49 -13.28 7.74 -34.44 -0.27 -13.54 16 15 H 0.06 1.71 7.61 -52.49 -0.40 1.31 16 16 C 0.05 1.50 5.31 -17.82 -0.09 1.40 16 17 N -0.90 -25.75 11.73 55.43 0.65 -25.10 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.13 -3.02 5.25 -26.74 -0.14 -3.16 16 23 C -0.15 -2.89 9.69 37.16 0.36 -2.53 16 24 C -0.12 -1.81 5.02 -25.62 -0.13 -1.93 16 25 C -0.11 -1.34 4.88 -27.44 -0.13 -1.48 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.67 6.24 -51.93 -0.32 0.35 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.59 8.00 -51.93 -0.42 0.17 16 33 H 0.05 0.67 5.92 -51.93 -0.31 0.36 16 34 H 0.05 0.68 7.46 -51.93 -0.39 0.29 16 35 H 0.06 1.02 7.47 -51.93 -0.39 0.63 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.95 6.60 -51.93 -0.34 1.61 16 38 H 0.05 0.85 6.97 -51.93 -0.36 0.48 16 39 H 0.32 6.16 6.07 -39.29 -0.24 5.92 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 2.32 6.45 -51.93 -0.34 1.99 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 45 H 0.03 0.62 6.73 -51.93 -0.35 0.27 16 46 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.60 7.61 -51.93 -0.40 0.20 16 49 H 0.06 0.75 6.63 -51.93 -0.34 0.41 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -27.37 355.01 -10.22 -37.59 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -9.40 Total: 5.38 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -1.19 Total: -24.85 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.04 Total: -40.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.37 -10.22 -37.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086946409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.180 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds