Wall clock time and date at job start Mon Mar 30 2020 07:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47496 * 2 1 4 4 C 1.52994 * 109.47496 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.77933 * 55.47671 * 4 3 2 6 6 C 1.54245 * 109.62869 * 295.00168 * 4 3 2 7 7 C 1.45539 * 112.40282 * 160.30724 * 6 4 3 8 8 C 1.54245 * 112.41047 * 61.93936 * 7 6 4 9 9 C 1.50480 * 108.51028 * 280.00049 * 8 7 6 10 10 H 1.08992 * 108.88100 * 333.37654 * 9 8 7 11 11 N 1.46897 * 108.87360 * 214.82735 * 9 8 7 12 12 C 1.46903 * 111.00000 * 88.84078 * 11 9 8 13 13 H 1.09002 * 109.46629 * 16.20456 * 12 11 9 14 14 C 1.50703 * 109.47112 * 256.20805 * 12 11 9 15 15 H 1.07991 * 119.99730 * 354.40700 * 14 12 11 16 16 C 1.37877 * 119.99987 * 174.40664 * 14 12 11 17 17 N 1.31520 * 120.00009 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00028 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47083 * 60.00046 * 18 16 14 20 20 H 1.48500 * 109.47081 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47043 * 299.99991 * 18 16 14 22 22 C 1.52993 * 109.47360 * 136.20441 * 12 11 9 23 23 C 1.52996 * 109.47389 * 296.31073 * 22 12 11 24 24 C 1.54069 * 112.49306 * 94.15476 * 9 8 7 25 25 C 1.50466 * 109.62978 * 175.96355 * 4 3 2 26 26 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46917 * 300.00098 * 1 2 3 28 28 H 1.08993 * 109.47214 * 59.99741 * 1 2 3 29 29 H 1.08993 * 109.47173 * 239.99880 * 2 1 3 30 30 H 1.09003 * 109.47408 * 119.99772 * 2 1 3 31 31 H 1.08998 * 109.46709 * 60.00144 * 3 2 1 32 32 H 1.08994 * 109.46581 * 300.00400 * 3 2 1 33 33 H 1.08998 * 108.89638 * 39.55893 * 6 4 3 34 34 H 1.08991 * 108.82005 * 281.00994 * 6 4 3 35 35 H 1.09005 * 108.89741 * 301.18776 * 7 6 4 36 36 H 1.08999 * 108.89783 * 182.69491 * 7 6 4 37 37 H 1.08990 * 109.63511 * 160.29289 * 8 7 6 38 38 H 1.08995 * 109.62828 * 39.70166 * 8 7 6 39 39 H 1.00901 * 110.99922 * 212.78948 * 11 9 8 40 40 H 0.96994 * 120.00215 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47381 * 56.31314 * 22 12 11 42 42 H 1.08999 * 109.47159 * 176.31125 * 22 12 11 43 43 H 1.09002 * 109.47754 * 185.11228 * 23 22 12 44 44 H 1.09008 * 109.47063 * 305.11445 * 23 22 12 45 45 H 1.09005 * 109.47312 * 65.11032 * 23 22 12 46 46 H 1.08997 * 108.81413 * 79.14625 * 24 9 8 47 47 H 1.09001 * 108.80712 * 197.41648 * 24 9 8 48 48 H 1.09003 * 108.87695 * 334.63922 * 25 4 3 49 49 H 1.09001 * 108.87790 * 93.08083 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9385 0.8613 -0.8460 6 6 4.0887 0.8283 1.3157 7 6 5.4682 0.3764 1.2112 8 6 6.4433 1.5308 0.9016 9 6 6.3794 1.8278 -0.5722 10 1 6.0746 0.9248 -1.1011 11 7 7.7165 2.2213 -1.0361 12 6 8.4954 1.0478 -1.4534 13 1 7.8258 0.1998 -1.5974 14 6 9.5084 0.7128 -0.3890 15 1 9.6297 1.3630 0.4647 16 6 10.2803 -0.4237 -0.5052 17 7 10.1322 -1.2158 -1.5446 18 14 11.5364 -0.8385 0.8137 19 1 10.8474 -1.0047 2.1187 20 1 12.2303 -2.1019 0.4565 21 1 12.5295 0.2608 0.9146 22 6 9.2180 1.3558 -2.7663 23 6 8.1875 1.6057 -3.8692 24 6 5.3865 2.9584 -0.9032 25 6 4.0754 2.8562 -0.1004 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.4585 -0.0204 1.5817 34 1 4.0216 1.5780 2.1040 35 1 5.5371 -0.3665 0.4166 36 1 5.7596 -0.0887 2.1529 37 1 7.4572 1.2364 1.1721 38 1 6.1531 2.4166 1.4665 39 1 7.6558 2.8987 -1.7814 40 1 10.6749 -2.0156 -1.6262 41 1 9.8379 2.2435 -2.6403 42 1 9.8472 0.5095 -3.0419 43 1 8.6997 1.7353 -4.8226 44 1 7.5102 0.7539 -3.9334 45 1 7.6181 2.5058 -3.6373 46 1 5.8587 3.9162 -0.6847 47 1 5.1514 2.9195 -1.9668 48 1 3.3159 3.4689 -0.5861 49 1 4.2465 3.2414 0.9048 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086946409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:58 Heat of formation + Delta-G solvation = -57.295663 kcal Electronic energy + Delta-G solvation = -21981.944792 eV Core-core repulsion = 19134.422775 eV Total energy + Delta-G solvation = -2847.522017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49356 -38.02670 -35.81585 -34.25936 -33.31036 -32.91824 -30.46139 -28.38412 -27.45313 -25.32206 -24.54022 -23.61431 -22.09282 -21.55034 -21.04309 -19.93194 -18.26527 -16.84462 -16.73359 -16.13692 -15.88107 -15.69529 -15.18075 -14.96710 -14.79980 -14.50850 -14.25762 -13.98645 -13.82608 -13.45858 -13.24208 -13.06845 -12.94102 -12.88477 -12.71491 -12.53487 -12.44193 -12.04184 -12.02557 -11.79154 -11.61795 -11.56107 -11.53750 -11.38949 -11.33782 -11.00562 -10.93092 -10.81853 -10.81659 -10.38823 -8.93928 -8.03620 -6.12933 1.41172 1.42278 1.49836 2.45550 3.22275 3.58456 3.71111 3.83167 4.06881 4.16444 4.20557 4.32272 4.38948 4.43847 4.48933 4.52621 4.55513 4.60570 4.64298 4.68113 4.79938 4.84382 4.91108 4.96595 5.02567 5.06701 5.11344 5.17499 5.19517 5.22119 5.24792 5.29412 5.31979 5.36581 5.40775 5.47120 5.49186 5.56538 5.57328 5.62541 5.69690 5.74484 5.80142 5.89489 6.38792 6.67746 7.01103 7.08233 7.55378 9.00505 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.004908 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.052675 B = 5703.803166 C = 6231.598606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.104 4.104 4 C -0.085 4.085 5 H 0.049 0.951 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.099 4.099 9 C 0.104 3.896 10 H 0.008 0.992 11 N -0.688 5.688 12 C 0.229 3.771 13 H -0.024 1.024 14 C -0.499 4.499 15 H 0.050 0.950 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.949 3.051 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.114 4.114 25 C -0.102 4.102 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.326 0.674 40 H 0.258 0.742 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 6.351 2.312 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.141 4.141 4 C -0.103 4.103 5 H 0.068 0.932 6 C -0.143 4.143 7 C -0.150 4.150 8 C -0.137 4.137 9 C -0.006 4.006 10 H 0.026 0.974 11 N -0.319 5.319 12 C 0.120 3.880 13 H -0.006 1.006 14 C -0.538 4.538 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.776 3.224 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.164 4.164 23 C -0.195 4.195 24 C -0.152 4.152 25 C -0.140 4.140 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.144 0.856 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.631 6.203 2.867 17.980 hybrid contribution 0.866 -1.073 -0.423 1.442 sum -15.765 5.130 2.444 16.758 Atomic orbital electron populations 1.21753 0.95046 1.01747 1.02089 1.21624 0.96415 0.97168 1.01594 1.21627 0.93371 0.96726 1.02418 1.20918 0.95702 0.96441 0.97257 0.93244 1.20557 0.94827 1.01123 0.97755 1.20394 0.96426 0.97762 1.00418 1.21301 0.98774 0.97794 0.95846 1.21313 0.87968 0.95681 0.95654 0.97413 1.60857 1.14680 1.14839 1.41541 1.18979 0.91040 0.86211 0.91724 1.00632 1.21480 1.18895 1.06641 1.06771 0.93217 1.25664 0.99280 0.96397 0.97618 1.70037 1.41763 1.14420 1.30308 0.85750 0.79543 0.77286 0.79871 1.20095 1.21149 1.19785 1.21715 0.98648 1.00076 0.95919 1.21738 0.98915 1.00220 0.98630 1.22102 0.95383 0.98010 0.99742 1.21310 0.95502 0.96550 1.00640 0.92744 0.92171 0.92560 0.93264 0.92008 0.91006 0.91573 0.91471 0.91326 0.95000 0.92898 0.93529 0.91336 0.85609 0.93329 0.94103 0.92687 0.92291 0.94866 0.92317 0.91294 0.92701 0.90576 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.51 16 2 C -0.13 -2.40 5.73 30.59 0.18 -2.22 16 3 C -0.10 -1.89 4.51 30.59 0.14 -1.75 16 4 C -0.08 -1.96 1.87 -11.19 -0.02 -1.98 16 5 H 0.05 1.39 6.98 -2.38 -0.02 1.37 16 6 C -0.11 -2.61 4.64 28.74 0.13 -2.47 16 7 C -0.11 -3.65 5.26 28.74 0.15 -3.50 16 8 C -0.10 -3.65 5.25 30.20 0.16 -3.49 16 9 C 0.10 3.83 2.02 44.46 0.09 3.92 16 10 H 0.01 0.34 5.67 -2.39 -0.01 0.32 16 11 N -0.69 -29.27 6.02 -475.66 -2.87 -32.13 16 12 C 0.23 11.68 1.95 44.17 0.09 11.77 16 13 H -0.02 -1.39 7.08 -2.39 -0.02 -1.41 16 14 C -0.50 -28.26 7.74 25.60 0.20 -28.06 16 15 H 0.05 2.87 7.61 -2.92 -0.02 2.85 16 16 C 0.01 0.45 5.31 84.65 0.45 0.90 16 17 N -0.92 -54.73 11.73 21.45 0.25 -54.48 16 18 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 22 C -0.12 -5.93 5.25 30.59 0.16 -5.77 16 23 C -0.14 -5.23 9.69 71.98 0.70 -4.53 16 24 C -0.11 -3.19 5.02 31.32 0.16 -3.03 16 25 C -0.10 -2.29 4.88 30.13 0.15 -2.14 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.17 6.24 -2.39 -0.01 1.15 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.12 8.00 -2.39 -0.02 1.10 16 33 H 0.07 1.52 5.92 -2.39 -0.01 1.51 16 34 H 0.07 1.54 7.46 -2.39 -0.02 1.52 16 35 H 0.03 1.18 7.47 -2.38 -0.02 1.16 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 2.11 6.60 -2.39 -0.02 2.10 16 38 H 0.07 2.24 6.97 -2.39 -0.02 2.22 16 39 H 0.33 12.50 6.07 -89.69 -0.54 11.95 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 2.99 6.45 -2.39 -0.02 2.97 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.94 6.73 -2.38 -0.02 1.93 16 46 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.08 1.41 7.61 -2.39 -0.02 1.39 16 49 H 0.07 1.43 6.63 -2.39 -0.02 1.41 16 Total: -1.00 -61.24 355.01 3.19 -58.05 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.34 Total: 25.11 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 3.44 Total: -43.87 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -2.61 Total: -86.61 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -61.24 3.19 -58.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086946409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.753 kcal (2) G-P(sol) polarization free energy of solvation -61.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds