Wall clock time and date at job start Mon Mar 30 2020 07:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47252 * 2 1 4 4 C 1.53005 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.09000 * 108.87044 * 53.60388 * 4 3 2 6 6 C 1.54231 * 108.89322 * 295.00012 * 4 3 2 7 7 C 1.50479 * 108.51551 * 159.35465 * 6 4 3 8 8 C 1.54063 * 112.50065 * 94.15377 * 7 6 4 9 9 C 1.54067 * 112.81515 * 318.28335 * 8 7 6 10 10 H 1.09000 * 108.88242 * 78.96127 * 9 8 7 11 11 N 1.46906 * 108.87639 * 197.50976 * 9 8 7 12 12 C 1.46906 * 110.99609 * 276.05687 * 11 9 8 13 13 H 1.08995 * 109.46800 * 35.36403 * 12 11 9 14 14 C 1.50700 * 109.46804 * 275.36457 * 12 11 9 15 15 H 1.07997 * 120.00157 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99779 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00189 * 180.02562 * 16 14 12 18 18 Si 1.86800 * 119.99973 * 0.02562 * 16 14 12 19 19 H 1.48502 * 109.47245 * 89.99677 * 18 16 14 20 20 H 1.48500 * 109.47403 * 210.00026 * 18 16 14 21 21 H 1.48501 * 109.47312 * 329.99885 * 18 16 14 22 22 C 1.52996 * 109.46981 * 155.36858 * 12 11 9 23 23 C 1.53009 * 109.47038 * 294.84958 * 22 12 11 24 24 C 1.50473 * 112.49795 * 318.28269 * 9 8 7 25 25 C 1.45549 * 108.81367 * 172.16034 * 4 3 2 26 26 H 1.09003 * 109.46787 * 60.00337 * 1 2 3 27 27 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47064 * 300.00357 * 1 2 3 29 29 H 1.09002 * 109.46876 * 239.99565 * 2 1 3 30 30 H 1.08999 * 109.46837 * 120.00180 * 2 1 3 31 31 H 1.08997 * 109.47094 * 59.99414 * 3 2 1 32 32 H 1.08999 * 109.47346 * 299.99868 * 3 2 1 33 33 H 1.09000 * 109.63275 * 39.64316 * 6 4 3 34 34 H 1.09002 * 109.63156 * 279.05428 * 6 4 3 35 35 H 1.09000 * 108.87662 * 333.36899 * 7 6 4 36 36 H 1.09001 * 108.87454 * 214.93200 * 7 6 4 37 37 H 1.09000 * 108.81178 * 197.42745 * 8 7 6 38 38 H 1.08995 * 108.81771 * 79.14297 * 8 7 6 39 39 H 1.00898 * 110.99965 * 152.10199 * 11 9 8 40 40 H 0.97000 * 119.99823 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47517 * 54.84676 * 22 12 11 42 42 H 1.08999 * 109.47025 * 174.84910 * 22 12 11 43 43 H 1.09006 * 109.46686 * 295.50597 * 23 22 12 44 44 H 1.09000 * 109.47003 * 55.50462 * 23 22 12 45 45 H 1.09001 * 109.47164 * 175.50528 * 23 22 12 46 46 H 1.09003 * 109.63315 * 213.85880 * 24 9 8 47 47 H 1.09006 * 109.63134 * 334.43735 * 24 9 8 48 48 H 1.08998 * 108.89151 * 303.39117 * 25 4 3 49 49 H 1.08995 * 108.89519 * 61.98318 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9230 0.8302 -0.8293 6 6 4.0689 0.8258 1.3234 7 6 5.4870 0.3614 1.1294 8 6 6.5187 1.4192 1.5656 9 6 6.1304 2.8462 1.1338 10 1 5.3777 3.2305 1.8222 11 7 7.3205 3.7045 1.2042 12 6 7.5257 4.2092 2.5685 13 1 7.2293 3.4449 3.2869 14 6 6.6904 5.4460 2.7774 15 1 6.0690 5.8195 1.9769 16 6 6.7187 6.1001 3.9908 17 7 5.9894 7.1792 4.1733 18 14 7.7930 5.4536 5.3755 19 1 9.1386 6.0758 5.2899 20 1 7.1734 5.7919 6.6820 21 1 7.9210 3.9790 5.2555 22 6 9.0033 4.5519 2.7687 23 6 9.8394 3.2733 2.6835 24 6 5.5776 2.8942 -0.2649 25 6 4.0396 2.8072 -0.1873 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.4394 -0.0223 1.5925 34 1 4.0343 1.5763 2.1132 35 1 5.6417 0.1316 0.0752 36 1 5.6439 -0.5458 1.7128 37 1 7.4848 1.1698 1.1267 38 1 6.6111 1.3934 2.6513 39 1 7.2580 4.4642 0.5431 40 1 6.0097 7.6395 5.0269 41 1 9.3233 5.2476 1.9930 42 1 9.1403 5.0111 3.7476 43 1 9.5748 2.6106 3.5075 44 1 9.6412 2.7720 1.7361 45 1 10.8978 3.5265 2.7462 46 1 5.8677 3.8306 -0.7414 47 1 5.9635 2.0525 -0.8402 48 1 3.6166 3.2019 -1.1110 49 1 3.6946 3.4172 0.6475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086946413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:00 Heat of formation + Delta-G solvation = -54.876707 kcal Electronic energy + Delta-G solvation = -21969.594323 eV Core-core repulsion = 19122.177200 eV Total energy + Delta-G solvation = -2847.417123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56024 -38.14396 -35.91633 -34.23116 -33.41875 -33.15723 -30.71747 -28.57673 -27.34930 -25.47505 -24.33877 -23.75749 -22.11394 -21.45037 -21.01243 -19.91021 -19.04387 -17.14594 -16.73934 -16.29954 -15.94480 -15.60592 -15.31858 -14.90603 -14.89647 -14.66163 -14.21096 -13.88618 -13.80804 -13.61351 -13.44956 -13.25348 -13.12468 -12.93683 -12.65268 -12.52959 -12.50481 -12.12809 -12.08859 -11.77240 -11.57676 -11.53533 -11.45709 -11.36267 -11.30633 -11.18183 -10.98100 -10.93808 -10.88013 -10.66155 -8.99642 -8.35048 -6.38938 1.26206 1.31111 1.41714 2.27248 3.00737 3.47286 3.71879 3.82137 4.01456 4.15284 4.20979 4.35504 4.39624 4.42096 4.46064 4.46868 4.48324 4.56970 4.62589 4.68010 4.81357 4.83084 4.91937 4.94129 4.97607 5.01224 5.09530 5.15163 5.17105 5.20100 5.21220 5.27222 5.30904 5.34136 5.38088 5.44425 5.47932 5.49098 5.50643 5.54244 5.60340 5.64869 5.68818 5.69943 6.12099 6.45956 6.67334 6.85035 7.30051 8.81384 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.004972 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.220338 B = 5629.904705 C = 6173.027824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.076 4.076 5 H 0.082 0.918 6 C -0.116 4.116 7 C -0.107 4.107 8 C -0.098 4.098 9 C 0.095 3.905 10 H 0.008 0.992 11 N -0.670 5.670 12 C 0.193 3.807 13 H 0.019 0.981 14 C -0.541 4.541 15 H 0.031 0.969 16 C 0.016 3.984 17 N -0.947 5.947 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.300 1.300 21 H -0.251 1.251 22 C -0.118 4.118 23 C -0.134 4.134 24 C -0.106 4.106 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.330 0.670 40 H 0.264 0.736 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -16.747 -9.040 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.095 4.095 5 H 0.100 0.900 6 C -0.153 4.153 7 C -0.145 4.145 8 C -0.136 4.136 9 C -0.015 4.015 10 H 0.026 0.974 11 N -0.299 5.299 12 C 0.083 3.917 13 H 0.037 0.963 14 C -0.580 4.580 15 H 0.050 0.950 16 C -0.182 4.182 17 N -0.588 5.588 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.228 1.228 21 H -0.175 1.175 22 C -0.156 4.156 23 C -0.191 4.191 24 C -0.144 4.144 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.147 0.853 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.241 -17.152 -8.853 19.572 hybrid contribution -0.573 1.576 1.241 2.086 sum -3.814 -15.576 -7.611 17.751 Atomic orbital electron populations 1.21790 0.95828 1.01900 1.01570 1.21581 0.95812 0.96106 1.02439 1.21730 0.94754 0.97545 1.01371 1.20056 0.95337 0.96030 0.98028 0.89961 1.21484 0.96586 1.00260 0.96970 1.21274 0.93710 0.97315 1.02228 1.21846 0.99501 0.93166 0.99117 1.21213 0.90342 0.93644 0.96262 0.97408 1.60912 1.39096 1.23593 1.06322 1.19391 0.91967 0.91906 0.88460 0.96306 1.22087 1.25844 1.11354 0.98719 0.95032 1.25830 0.96573 0.94656 1.01161 1.70065 1.42621 1.20399 1.25672 0.85852 0.78719 0.80329 0.77531 1.19071 1.22819 1.17478 1.21761 0.96793 0.98112 0.98932 1.21644 0.98499 0.96817 1.02126 1.21468 0.95223 1.02108 0.95583 1.20494 0.95287 0.97808 1.01104 0.92689 0.91996 0.93445 0.91234 0.91710 0.93619 0.91871 0.90222 0.94510 0.90691 0.91447 0.91303 0.95118 0.85277 0.92659 0.92731 0.95222 0.94244 0.90971 0.92475 0.92667 0.89722 0.91425 0.95057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.12 -2.04 5.73 30.59 0.18 -1.86 16 3 C -0.12 -2.39 4.59 30.59 0.14 -2.25 16 4 C -0.08 -1.70 1.69 -12.65 -0.02 -1.72 16 5 H 0.08 1.59 7.46 -2.39 -0.02 1.57 16 6 C -0.12 -2.79 4.92 30.20 0.15 -2.65 16 7 C -0.11 -2.51 5.31 30.14 0.16 -2.35 16 8 C -0.10 -3.00 5.20 31.31 0.16 -2.84 16 9 C 0.10 3.40 1.84 44.46 0.08 3.48 16 10 H 0.01 0.34 6.05 -2.39 -0.01 0.33 16 11 N -0.67 -26.68 5.41 -475.65 -2.57 -29.25 16 12 C 0.19 9.04 1.36 44.17 0.06 9.10 16 13 H 0.02 0.94 6.28 -2.39 -0.01 0.93 16 14 C -0.54 -30.99 8.81 25.60 0.23 -30.77 16 15 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 16 C 0.02 0.93 5.45 84.65 0.46 1.39 16 17 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 18 Si 0.95 46.32 24.41 68.60 1.67 47.99 16 19 H -0.26 -12.30 6.83 99.48 0.68 -11.62 16 20 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 21 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 22 C -0.12 -5.06 5.11 30.60 0.16 -4.90 16 23 C -0.13 -4.60 9.85 71.99 0.71 -3.89 16 24 C -0.11 -3.10 5.27 30.20 0.16 -2.94 16 25 C -0.11 -2.98 4.44 28.74 0.13 -2.85 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.09 6.20 -2.39 -0.01 1.07 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.23 8.02 -2.39 -0.02 1.22 16 33 H 0.08 1.63 5.91 -2.39 -0.01 1.62 16 34 H 0.04 1.12 6.97 -2.39 -0.02 1.10 16 35 H 0.07 1.51 6.63 -2.39 -0.02 1.50 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 38 H 0.03 1.05 7.64 -2.39 -0.02 1.03 16 39 H 0.33 13.51 7.49 -89.70 -0.67 12.83 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.03 1.35 3.22 -2.39 -0.01 1.34 16 43 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.07 2.37 7.64 -2.39 -0.02 2.35 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 1.69 7.27 -2.39 -0.02 1.68 16 47 H 0.08 2.11 6.98 -2.38 -0.02 2.09 16 48 H 0.07 1.65 8.02 -2.39 -0.02 1.63 16 49 H 0.03 1.05 7.46 -2.39 -0.02 1.03 16 Total: -1.00 -63.74 350.65 3.00 -60.75 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.13 Total: 27.00 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 3.46 Total: -46.71 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.27 Total: -89.03 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 47.99 kcal Total: -63.74 3.00 -60.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086946413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.872 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds