Wall clock time and date at job start Mon Mar 30 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47105 * 2 1 4 4 H 1.08998 * 108.93981 * 184.49293 * 3 2 1 5 5 C 1.54428 * 109.01926 * 65.62398 * 3 2 1 6 6 C 1.50753 * 109.02503 * 162.00226 * 5 3 2 7 7 C 1.54168 * 112.61216 * 93.01549 * 6 5 3 8 8 C 1.53825 * 111.96861 * 318.48961 * 7 6 5 9 9 C 1.50820 * 111.62085 * 319.03808 * 8 7 6 10 10 N 1.39776 * 109.01741 * 303.36077 * 3 2 1 11 11 C 1.46900 * 111.00075 * 309.70962 * 10 3 2 12 12 C 1.53000 * 109.47721 * 299.29217 * 11 10 3 13 13 C 1.52999 * 109.46897 * 328.13482 * 12 11 10 14 14 C 1.53002 * 109.46954 * 88.13462 * 12 11 10 15 15 C 1.52992 * 109.47321 * 208.13510 * 12 11 10 16 16 C 1.50695 * 109.47306 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00065 * 0.02562 * 16 15 12 18 18 C 1.37885 * 120.00163 * 179.97438 * 16 15 12 19 19 N 1.31506 * 119.99679 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99839 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46809 * 60.00620 * 20 18 16 22 22 H 1.48501 * 109.47043 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47579 * 300.00541 * 20 18 16 24 24 H 1.08998 * 109.47654 * 304.97898 * 1 2 3 25 25 H 1.09007 * 109.46856 * 64.98193 * 1 2 3 26 26 H 1.09005 * 109.47125 * 184.97496 * 1 2 3 27 27 H 1.09004 * 109.47662 * 239.99932 * 2 1 3 28 28 H 1.09002 * 109.47135 * 119.99775 * 2 1 3 29 29 H 1.09008 * 109.54127 * 281.86254 * 5 3 2 30 30 H 1.08999 * 109.54920 * 42.04396 * 5 3 2 31 31 H 1.09001 * 108.85193 * 213.81841 * 6 5 3 32 32 H 1.08997 * 108.85518 * 332.20514 * 6 5 3 33 33 H 1.09000 * 108.98362 * 79.12652 * 7 6 5 34 34 H 1.08995 * 108.98316 * 197.84800 * 7 6 5 35 35 H 1.08991 * 109.05307 * 79.59557 * 8 7 6 36 36 H 1.09000 * 109.04810 * 198.56350 * 8 7 6 37 37 H 1.09004 * 109.74742 * 335.42527 * 9 8 7 38 38 H 1.08995 * 109.74741 * 214.69930 * 9 8 7 39 39 H 1.08997 * 109.47457 * 179.28572 * 11 10 3 40 40 H 1.09003 * 109.46524 * 59.29462 * 11 10 3 41 41 H 1.09002 * 109.47126 * 67.07232 * 13 12 11 42 42 H 1.08996 * 109.46994 * 187.07372 * 13 12 11 43 43 H 1.09006 * 109.47205 * 307.07714 * 13 12 11 44 44 H 1.08998 * 109.47251 * 37.44423 * 14 12 11 45 45 H 1.08998 * 109.47088 * 157.44574 * 14 12 11 46 46 H 1.09003 * 109.46652 * 277.44247 * 14 12 11 47 47 H 1.09008 * 109.47530 * 300.00063 * 15 12 11 48 48 H 1.09008 * 109.47209 * 59.99845 * 15 12 11 49 49 H 0.97005 * 119.99805 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1269 1.4335 -0.0808 5 6 1.6396 2.1179 1.3298 6 6 2.4894 3.3465 1.5324 7 6 1.8218 4.6253 0.9886 8 6 1.1362 4.3845 -0.3672 9 6 1.9719 3.5062 -1.2643 10 7 1.5067 2.1142 -1.1037 11 6 1.7124 1.3448 -2.3381 12 6 3.2117 1.1535 -2.5760 13 6 3.9730 2.3637 -2.0313 14 6 3.6846 -0.1121 -1.8580 15 6 3.4766 1.0176 -4.0767 16 6 4.9533 0.8299 -4.3111 17 1 5.6347 0.8090 -3.4735 18 6 5.4345 0.6835 -5.5950 19 7 4.6047 0.7084 -6.6149 20 14 7.2651 0.4515 -5.8855 21 1 7.7253 -0.7761 -5.1879 22 1 7.5223 0.3195 -7.3421 23 1 8.0031 1.6270 -5.3576 24 1 -0.3634 0.5891 0.8420 25 1 -0.3633 0.4346 -0.9313 26 1 -0.3634 -1.0238 0.0891 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5884 2.4038 1.2916 30 1 1.7987 1.4228 2.1542 31 1 2.6769 3.4732 2.5987 32 1 3.4427 3.2032 1.0238 33 1 1.0770 4.9691 1.7063 34 1 2.5808 5.3984 0.8697 35 1 0.1719 3.9054 -0.1982 36 1 0.9752 5.3435 -0.8597 37 1 3.0210 3.5792 -0.9777 38 1 1.8503 3.8177 -2.3017 39 1 1.2769 1.8840 -3.1793 40 1 1.2324 0.3708 -2.2432 41 1 3.8869 2.3882 -0.9449 42 1 5.0237 2.2879 -2.3109 43 1 3.5505 3.2772 -2.4498 44 1 2.9140 -0.8796 -1.9290 45 1 4.6012 -0.4733 -2.3242 46 1 3.8756 0.1152 -0.8092 47 1 2.9342 0.1554 -4.4649 48 1 3.1397 1.9193 -4.5883 49 1 4.9432 0.6051 -7.5181 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093530272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:49 Heat of formation + Delta-G solvation = 15.915057 kcal Electronic energy + Delta-G solvation = -23208.517293 eV Core-core repulsion = 20364.169931 eV Total energy + Delta-G solvation = -2844.347362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.18567 -37.71078 -35.70246 -34.76145 -33.52853 -31.09328 -29.28770 -29.11301 -28.10607 -26.04378 -25.54401 -24.20970 -23.36820 -20.48578 -20.22892 -19.49713 -18.27752 -17.16631 -16.77542 -16.60167 -16.21147 -15.56864 -15.03313 -14.94874 -14.80176 -14.40845 -14.12567 -13.98912 -13.73528 -13.64824 -13.11503 -13.01018 -12.80519 -12.74569 -12.48007 -12.40563 -12.26752 -12.08301 -11.90190 -11.85638 -11.79223 -11.51650 -11.38343 -11.28537 -11.21945 -10.99371 -10.91889 -10.76752 -10.58029 -10.49355 -8.64556 -8.13997 -6.22118 1.38056 1.39705 1.47253 2.41538 3.18006 3.18933 3.84674 3.99045 4.05725 4.16617 4.19063 4.23575 4.33988 4.37835 4.46560 4.55358 4.61587 4.73537 4.76374 4.83976 4.87169 4.89393 4.95402 4.99517 5.02569 5.06790 5.09799 5.13204 5.19010 5.24227 5.26809 5.36216 5.38195 5.40908 5.47038 5.48618 5.54253 5.55679 5.63195 5.66454 5.67940 5.73447 5.86922 5.91987 6.32377 6.43027 6.80241 6.92402 7.44688 8.96477 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.005530 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.512381 B = 5061.641624 C = 5416.029055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C 0.090 3.910 4 H 0.036 0.964 5 C -0.104 4.104 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.115 4.115 9 C 0.041 3.959 10 N -0.530 5.530 11 C 0.071 3.929 12 C -0.082 4.082 13 C -0.146 4.146 14 C -0.132 4.132 15 C 0.046 3.954 16 C -0.515 4.515 17 H 0.061 0.939 18 C -0.002 4.002 19 N -0.936 5.936 20 Si 0.953 3.047 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.270 1.270 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.039 0.961 46 H 0.064 0.936 47 H -0.015 1.015 48 H -0.018 1.018 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 3.956 17.631 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.182 4.182 3 C -0.020 4.020 4 H 0.053 0.947 5 C -0.142 4.142 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.153 4.153 9 C -0.085 4.085 10 N -0.253 5.253 11 C -0.057 4.057 12 C -0.083 4.083 13 C -0.202 4.202 14 C -0.189 4.189 15 C 0.008 3.992 16 C -0.553 4.553 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.778 3.222 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.195 1.195 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.003 0.997 48 H 0.000 1.000 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.224 3.985 17.568 19.409 hybrid contribution 1.770 -0.251 -1.259 2.187 sum -5.454 3.733 16.309 17.597 Atomic orbital electron populations 1.21603 0.95072 1.00447 1.01973 1.22237 0.97292 0.95855 1.02815 1.20800 0.96681 0.93603 0.90914 0.94686 1.21482 1.00666 0.96482 0.95539 1.21420 0.98653 0.94892 1.00921 1.21871 0.99698 0.97047 0.96312 1.21436 0.99701 0.98765 0.95360 1.22655 0.99310 0.87818 0.98729 1.59159 1.61546 1.02020 1.02530 1.22343 0.93568 0.98484 0.91257 1.21111 0.95686 0.95592 0.95947 1.22821 0.99911 0.97704 0.99735 1.22237 1.00650 0.96746 0.99230 1.18965 0.95052 0.93820 0.91359 1.21572 0.94108 1.47641 0.91967 0.92067 1.25885 1.01980 0.95693 0.96357 1.70095 1.36344 1.52213 0.99037 0.85684 0.80627 0.78979 0.76866 1.19381 1.21233 1.19519 0.92425 0.93270 0.93417 0.90926 0.91360 0.91038 0.90908 0.91291 0.93627 0.91430 0.92375 0.91507 0.92048 0.91192 0.92886 0.93297 0.90355 0.90632 0.94709 0.92479 0.92556 0.94207 0.91755 0.99708 0.99991 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.29 71.98 0.67 -2.33 16 2 C -0.14 -3.48 4.18 30.60 0.13 -3.35 16 3 C 0.09 2.23 1.10 46.69 0.05 2.28 16 4 H 0.04 1.00 2.77 -2.39 -0.01 0.99 16 5 C -0.10 -2.11 4.28 30.35 0.13 -1.98 16 6 C -0.12 -2.35 5.31 30.26 0.16 -2.19 16 7 C -0.11 -2.10 5.91 31.27 0.18 -1.91 16 8 C -0.11 -2.53 5.41 30.16 0.16 -2.37 16 9 C 0.04 1.12 3.26 85.45 0.28 1.40 16 10 N -0.53 -14.74 3.26 -886.84 -2.89 -17.63 16 11 C 0.07 2.43 4.42 86.30 0.38 2.81 16 12 C -0.08 -3.19 0.52 -52.18 -0.03 -3.22 16 13 C -0.15 -5.35 6.11 71.98 0.44 -4.91 16 14 C -0.13 -4.81 7.03 71.98 0.51 -4.30 16 15 C 0.05 2.36 3.89 29.84 0.12 2.48 16 16 C -0.51 -28.61 7.23 25.60 0.19 -28.42 16 17 H 0.06 3.29 5.94 -2.91 -0.02 3.27 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 19 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 20 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 24 H 0.06 1.18 6.77 -2.39 -0.02 1.16 16 25 H 0.05 1.25 6.69 -2.38 -0.02 1.23 16 26 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.07 2.00 2.88 -2.38 -0.01 2.00 16 28 H 0.07 1.45 8.03 -2.39 -0.02 1.44 16 29 H 0.07 1.48 6.37 -2.38 -0.02 1.47 16 30 H 0.07 1.31 7.94 -2.39 -0.02 1.29 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 1.00 6.03 -2.39 -0.01 0.99 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.54 7.26 -2.39 -0.02 1.52 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.97 3.13 -2.38 -0.01 1.96 16 38 H 0.05 1.64 6.91 -2.39 -0.02 1.62 16 39 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 40 H 0.08 2.60 4.84 -2.39 -0.01 2.59 16 41 H 0.08 2.39 2.99 -2.39 -0.01 2.38 16 42 H 0.03 1.43 6.42 -2.39 -0.02 1.41 16 43 H 0.06 2.09 5.28 -2.38 -0.01 2.08 16 44 H 0.06 1.93 5.78 -2.39 -0.01 1.91 16 45 H 0.04 1.66 6.24 -2.39 -0.01 1.64 16 46 H 0.06 2.02 5.24 -2.39 -0.01 2.01 16 47 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 48 H -0.02 -1.05 8.11 -2.38 -0.02 -1.07 16 49 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -60.81 321.14 4.19 -56.62 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.94 Total: 17.09 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 3.83 Total: -45.67 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -2.61 Total: -74.79 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -60.81 4.19 -56.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093530272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.535 kcal (2) G-P(sol) polarization free energy of solvation -60.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds