Wall clock time and date at job start Mon Mar 30 2020 07:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47421 * 2 1 4 4 H 1.08996 * 108.78244 * 185.90858 * 3 2 1 5 5 C 1.50447 * 108.80858 * 304.30801 * 3 2 1 6 6 C 1.54305 * 108.49880 * 214.58791 * 5 3 2 7 7 C 1.45876 * 112.18968 * 281.46739 * 6 5 3 8 8 C 1.54313 * 112.18914 * 61.11684 * 7 6 5 9 9 C 1.50443 * 108.49277 * 281.47066 * 8 7 6 10 10 N 1.47931 * 108.85415 * 67.69636 * 3 2 1 11 11 C 1.46898 * 111.05747 * 70.51382 * 10 3 2 12 12 C 1.53001 * 109.47198 * 213.95435 * 11 10 3 13 13 C 1.52997 * 109.47131 * 294.69951 * 12 11 10 14 14 C 1.52999 * 109.47033 * 54.69903 * 12 11 10 15 15 C 1.52996 * 109.47030 * 174.69849 * 12 11 10 16 16 C 1.50707 * 109.47170 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99746 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99818 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99687 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00378 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46907 * 90.00014 * 20 18 16 22 22 H 1.48496 * 109.47305 * 210.00154 * 20 18 16 23 23 H 1.48502 * 109.46999 * 330.00293 * 20 18 16 24 24 H 1.08998 * 109.46535 * 65.96828 * 1 2 3 25 25 H 1.08999 * 109.46896 * 185.96112 * 1 2 3 26 26 H 1.08993 * 109.47498 * 305.96868 * 1 2 3 27 27 H 1.08996 * 109.47818 * 239.99214 * 2 1 3 28 28 H 1.09002 * 109.47055 * 119.99655 * 2 1 3 29 29 H 1.09001 * 109.63231 * 94.88482 * 5 3 2 30 30 H 1.09001 * 109.79817 * 334.38962 * 5 3 2 31 31 H 1.09002 * 108.93993 * 160.76500 * 6 5 3 32 32 H 1.09000 * 108.86246 * 42.11414 * 6 5 3 33 33 H 1.09002 * 108.94024 * 300.42445 * 7 6 5 34 34 H 1.09000 * 108.86609 * 181.76571 * 7 6 5 35 35 H 1.08998 * 109.63845 * 161.76344 * 8 7 6 36 36 H 1.09010 * 109.63292 * 41.16789 * 8 7 6 37 37 H 1.08995 * 108.81375 * 214.59302 * 9 8 7 38 38 H 1.09004 * 108.80775 * 332.97259 * 9 8 7 39 39 H 1.08994 * 109.47338 * 333.95615 * 11 10 3 40 40 H 1.09000 * 109.46964 * 93.95703 * 11 10 3 41 41 H 1.08997 * 109.47478 * 68.60164 * 13 12 11 42 42 H 1.09005 * 109.47492 * 188.60503 * 13 12 11 43 43 H 1.09007 * 109.47358 * 308.60342 * 13 12 11 44 44 H 1.08996 * 109.47127 * 60.00171 * 14 12 11 45 45 H 1.08998 * 109.46840 * 180.02562 * 14 12 11 46 46 H 1.09005 * 109.46970 * 299.99705 * 14 12 11 47 47 H 1.08996 * 109.47349 * 299.99963 * 15 12 11 48 48 H 1.09002 * 109.47420 * 60.00046 * 15 12 11 49 49 H 0.97000 * 120.00309 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1248 1.4312 -0.1062 5 6 1.4450 2.1674 -1.1764 6 6 2.4848 3.1767 -1.7066 7 6 2.5458 4.3846 -0.8909 8 6 2.9583 4.0842 0.5654 9 6 1.7595 3.5490 1.3001 10 7 1.6985 2.0704 1.2952 11 6 2.5068 1.5064 2.3845 12 6 1.6761 1.4679 3.6688 13 6 1.3536 2.8968 4.1106 14 6 0.3736 0.7076 3.4110 15 6 2.4702 0.7609 4.7688 16 6 1.6522 0.7235 6.0340 17 1 0.6646 1.1600 6.0515 18 6 2.1648 0.1320 7.1691 19 7 1.4508 0.0990 8.2730 20 14 3.8729 -0.6237 7.1386 21 1 4.8752 0.4030 7.5216 22 1 3.9310 -1.7547 8.0990 23 1 4.1703 -1.1198 5.7709 24 1 -0.3632 0.4185 -0.9386 25 1 -0.3633 -1.0221 0.1067 26 1 -0.3634 0.6035 0.8317 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8900 29 1 0.5461 2.6983 -0.8629 30 1 1.1939 1.4539 -1.9612 31 1 2.2216 3.4523 -2.7278 32 1 3.4662 2.7024 -1.7103 33 1 1.5653 4.8607 -0.8898 34 1 3.2710 5.0700 -1.3298 35 1 3.3028 5.0004 1.0449 36 1 3.7553 3.3407 0.5744 37 1 1.7964 3.8958 2.3328 38 1 0.8565 3.9397 0.8309 39 1 2.8161 0.4950 2.1214 40 1 3.3891 2.1270 2.5410 41 1 0.6622 3.3496 3.4001 42 1 0.8966 2.8768 5.1000 43 1 2.2725 3.4821 4.1466 44 1 0.6033 -0.3103 3.0963 45 1 -0.2184 0.6806 4.3258 46 1 -0.1922 1.2115 2.6273 47 1 2.6999 -0.2571 4.4541 48 1 3.3982 1.3025 4.9525 49 1 1.8111 -0.3175 9.0715 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093530273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:52 Heat of formation + Delta-G solvation = -18.419753 kcal Electronic energy + Delta-G solvation = -22728.708550 eV Core-core repulsion = 19882.872319 eV Total energy + Delta-G solvation = -2845.836231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90998 -36.81208 -34.68478 -33.36873 -31.95166 -29.98866 -27.85073 -27.37757 -26.19151 -25.20562 -24.38764 -22.10009 -22.02367 -20.49978 -18.57684 -17.72646 -16.69206 -16.31830 -15.81931 -14.71356 -14.49780 -14.11272 -13.91589 -13.68610 -13.47567 -13.12377 -12.89434 -12.73424 -12.50570 -12.37680 -12.07294 -11.85794 -11.52231 -11.49348 -11.22971 -11.02114 -10.90193 -10.83320 -10.66123 -10.61874 -10.43824 -10.32713 -10.29603 -10.20348 -9.90476 -9.70955 -9.54584 -9.07582 -8.85064 -8.45382 -7.73515 -5.95860 -3.91208 3.34452 3.42209 3.46007 4.07743 4.51913 4.60576 4.71355 4.89327 5.06333 5.14672 5.31685 5.37369 5.40884 5.46848 5.53961 5.63726 5.68101 5.71355 5.76791 5.82829 5.95842 5.97314 6.00940 6.04019 6.05501 6.10371 6.19448 6.25070 6.28102 6.31577 6.34799 6.38899 6.47325 6.55691 6.60198 6.76476 6.84279 6.91190 7.19063 7.26696 7.29621 7.42816 7.50741 7.55188 7.63834 7.91484 8.65302 9.10954 9.67794 11.17385 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.005220 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.069478 B = 5363.021418 C = 5666.438680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.032 0.968 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.148 4.148 9 C 0.043 3.957 10 N -0.533 5.533 11 C 0.065 3.935 12 C -0.040 4.040 13 C -0.133 4.133 14 C -0.115 4.115 15 C -0.006 4.006 16 C -0.503 4.503 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.907 5.907 20 Si 0.874 3.126 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.267 1.267 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.012 0.988 48 H 0.006 0.994 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 5.582 -19.915 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.013 4.013 4 H 0.050 0.950 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.188 4.188 9 C -0.085 4.085 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.041 4.041 13 C -0.190 4.190 14 C -0.172 4.172 15 C -0.043 4.043 16 C -0.541 4.541 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.547 5.547 20 Si 0.702 3.298 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.192 1.192 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.024 0.976 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.781 5.403 -19.671 20.415 hybrid contribution 1.985 -0.270 -0.017 2.004 sum 2.766 5.133 -19.689 20.534 Atomic orbital electron populations 1.21765 0.95316 1.01098 1.02236 1.21671 0.97195 0.95381 1.01253 1.21249 0.96813 0.94159 0.89111 0.95029 1.21477 0.98841 0.97885 0.96807 1.20603 0.99503 0.96664 0.99020 1.20542 1.01338 0.97727 0.95684 1.21947 0.99782 1.01226 0.95800 1.22316 0.96548 0.87501 1.02084 1.61655 1.56962 1.04196 1.02931 1.22316 0.94011 0.98363 0.91553 1.20327 0.95803 0.95651 0.92309 1.21977 0.99620 0.95734 1.01699 1.21639 0.96824 0.98178 1.00533 1.19640 0.95353 0.94867 0.94485 1.21150 1.03259 1.36564 0.93140 0.90393 1.25010 0.97063 0.95925 0.95594 1.69910 1.37487 1.45699 1.01580 0.86867 0.85704 0.79191 0.78002 1.20576 1.21622 1.19192 0.93761 0.93891 0.90440 0.92762 0.91596 0.90718 0.91403 0.92557 0.92616 0.92127 0.92906 0.91808 0.92052 0.89081 0.91627 0.91954 0.95185 0.93525 0.91381 0.94624 0.94616 0.92592 0.93142 0.96945 0.97600 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.42 37.16 0.35 -1.41 16 2 C -0.12 -1.42 5.41 -26.73 -0.14 -1.57 16 3 C 0.09 1.14 1.42 -68.42 -0.10 1.04 16 4 H 0.03 0.41 6.47 -51.93 -0.34 0.07 16 5 C -0.11 -1.15 4.01 -27.32 -0.11 -1.26 16 6 C -0.12 -1.13 5.30 -29.42 -0.16 -1.29 16 7 C -0.12 -1.11 5.30 -29.42 -0.16 -1.26 16 8 C -0.15 -1.65 5.48 -27.32 -0.15 -1.80 16 9 C 0.04 0.54 4.19 -4.50 -0.02 0.52 16 10 N -0.53 -7.25 2.66 -227.99 -0.61 -7.86 16 11 C 0.07 1.06 3.86 -3.82 -0.01 1.05 16 12 C -0.04 -0.77 0.61 -154.51 -0.09 -0.87 16 13 C -0.13 -2.47 6.76 37.16 0.25 -2.22 16 14 C -0.11 -2.18 7.79 37.16 0.29 -1.89 16 15 C -0.01 -0.13 3.11 -27.88 -0.09 -0.22 16 16 C -0.50 -13.93 8.09 -34.44 -0.28 -14.21 16 17 H 0.08 2.31 5.96 -52.49 -0.31 1.99 16 18 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 19 N -0.91 -27.96 13.96 55.43 0.77 -27.18 16 20 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 24 H 0.04 0.47 6.97 -51.93 -0.36 0.11 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.06 5.65 -51.93 -0.29 0.76 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.92 6.39 -51.93 -0.33 0.58 16 29 H 0.07 0.82 7.08 -51.93 -0.37 0.45 16 30 H 0.07 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 33 H 0.06 0.57 7.52 -51.93 -0.39 0.18 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.75 6.79 -51.92 -0.35 0.40 16 37 H 0.09 1.25 4.15 -51.93 -0.22 1.04 16 38 H 0.07 0.79 6.58 -51.93 -0.34 0.45 16 39 H 0.06 1.04 6.10 -51.93 -0.32 0.72 16 40 H 0.03 0.50 7.53 -51.93 -0.39 0.11 16 41 H 0.05 0.76 6.18 -51.93 -0.32 0.44 16 42 H 0.07 1.45 6.38 -51.93 -0.33 1.12 16 43 H 0.03 0.63 7.60 -51.92 -0.39 0.23 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.20 6.62 -51.93 -0.34 0.86 16 46 H 0.05 0.86 5.71 -51.93 -0.30 0.57 16 47 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 48 H 0.01 0.14 7.57 -51.93 -0.39 -0.26 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -28.68 337.38 -8.86 -37.54 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.93 Total: -1.26 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -0.51 Total: -23.62 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.17 Total: -35.05 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.68 -8.86 -37.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093530273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.125 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds