Wall clock time and date at job start Mon Mar 30 2020 07:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47421 * 2 1 4 4 H 1.08996 * 108.78244 * 185.90858 * 3 2 1 5 5 C 1.50447 * 108.80858 * 304.30801 * 3 2 1 6 6 C 1.54305 * 108.49880 * 214.58791 * 5 3 2 7 7 C 1.45876 * 112.18968 * 281.46739 * 6 5 3 8 8 C 1.54313 * 112.18914 * 61.11684 * 7 6 5 9 9 C 1.50443 * 108.49277 * 281.47066 * 8 7 6 10 10 N 1.47931 * 108.85415 * 67.69636 * 3 2 1 11 11 C 1.46898 * 111.05747 * 70.51382 * 10 3 2 12 12 C 1.53001 * 109.47198 * 213.95435 * 11 10 3 13 13 C 1.52997 * 109.47131 * 294.69951 * 12 11 10 14 14 C 1.52999 * 109.47033 * 54.69903 * 12 11 10 15 15 C 1.52996 * 109.47030 * 174.69849 * 12 11 10 16 16 C 1.50707 * 109.47170 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99746 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99818 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99687 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00378 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46907 * 90.00014 * 20 18 16 22 22 H 1.48496 * 109.47305 * 210.00154 * 20 18 16 23 23 H 1.48502 * 109.46999 * 330.00293 * 20 18 16 24 24 H 1.08998 * 109.46535 * 65.96828 * 1 2 3 25 25 H 1.08999 * 109.46896 * 185.96112 * 1 2 3 26 26 H 1.08993 * 109.47498 * 305.96868 * 1 2 3 27 27 H 1.08996 * 109.47818 * 239.99214 * 2 1 3 28 28 H 1.09002 * 109.47055 * 119.99655 * 2 1 3 29 29 H 1.09001 * 109.63231 * 94.88482 * 5 3 2 30 30 H 1.09001 * 109.79817 * 334.38962 * 5 3 2 31 31 H 1.09002 * 108.93993 * 160.76500 * 6 5 3 32 32 H 1.09000 * 108.86246 * 42.11414 * 6 5 3 33 33 H 1.09002 * 108.94024 * 300.42445 * 7 6 5 34 34 H 1.09000 * 108.86609 * 181.76571 * 7 6 5 35 35 H 1.08998 * 109.63845 * 161.76344 * 8 7 6 36 36 H 1.09010 * 109.63292 * 41.16789 * 8 7 6 37 37 H 1.08995 * 108.81375 * 214.59302 * 9 8 7 38 38 H 1.09004 * 108.80775 * 332.97259 * 9 8 7 39 39 H 1.08994 * 109.47338 * 333.95615 * 11 10 3 40 40 H 1.09000 * 109.46964 * 93.95703 * 11 10 3 41 41 H 1.08997 * 109.47478 * 68.60164 * 13 12 11 42 42 H 1.09005 * 109.47492 * 188.60503 * 13 12 11 43 43 H 1.09007 * 109.47358 * 308.60342 * 13 12 11 44 44 H 1.08996 * 109.47127 * 60.00171 * 14 12 11 45 45 H 1.08998 * 109.46840 * 180.02562 * 14 12 11 46 46 H 1.09005 * 109.46970 * 299.99705 * 14 12 11 47 47 H 1.08996 * 109.47349 * 299.99963 * 15 12 11 48 48 H 1.09002 * 109.47420 * 60.00046 * 15 12 11 49 49 H 0.97000 * 120.00309 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1248 1.4312 -0.1062 5 6 1.4450 2.1674 -1.1764 6 6 2.4848 3.1767 -1.7066 7 6 2.5458 4.3846 -0.8909 8 6 2.9583 4.0842 0.5654 9 6 1.7595 3.5490 1.3001 10 7 1.6985 2.0704 1.2952 11 6 2.5068 1.5064 2.3845 12 6 1.6761 1.4679 3.6688 13 6 1.3536 2.8968 4.1106 14 6 0.3736 0.7076 3.4110 15 6 2.4702 0.7609 4.7688 16 6 1.6522 0.7235 6.0340 17 1 0.6646 1.1600 6.0515 18 6 2.1648 0.1320 7.1691 19 7 1.4508 0.0990 8.2730 20 14 3.8729 -0.6237 7.1386 21 1 4.8752 0.4030 7.5216 22 1 3.9310 -1.7547 8.0990 23 1 4.1703 -1.1198 5.7709 24 1 -0.3632 0.4185 -0.9386 25 1 -0.3633 -1.0221 0.1067 26 1 -0.3634 0.6035 0.8317 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8900 29 1 0.5461 2.6983 -0.8629 30 1 1.1939 1.4539 -1.9612 31 1 2.2216 3.4523 -2.7278 32 1 3.4662 2.7024 -1.7103 33 1 1.5653 4.8607 -0.8898 34 1 3.2710 5.0700 -1.3298 35 1 3.3028 5.0004 1.0449 36 1 3.7553 3.3407 0.5744 37 1 1.7964 3.8958 2.3328 38 1 0.8565 3.9397 0.8309 39 1 2.8161 0.4950 2.1214 40 1 3.3891 2.1270 2.5410 41 1 0.6622 3.3496 3.4001 42 1 0.8966 2.8768 5.1000 43 1 2.2725 3.4821 4.1466 44 1 0.6033 -0.3103 3.0963 45 1 -0.2184 0.6806 4.3258 46 1 -0.1922 1.2115 2.6273 47 1 2.6999 -0.2571 4.4541 48 1 3.3982 1.3025 4.9525 49 1 1.8111 -0.3175 9.0715 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093530273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:51 Heat of formation + Delta-G solvation = -32.909121 kcal Electronic energy + Delta-G solvation = -22729.336856 eV Core-core repulsion = 19882.872319 eV Total energy + Delta-G solvation = -2846.464537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95440 -38.23254 -35.62723 -34.87050 -33.73858 -30.91355 -29.71118 -28.64430 -27.69218 -26.21636 -25.67384 -23.86873 -22.97737 -21.35131 -19.65966 -19.26758 -18.79905 -17.32783 -16.81304 -16.24816 -15.74290 -15.59060 -15.24519 -14.73078 -14.66381 -14.50992 -14.27594 -13.98138 -13.89369 -13.68685 -13.30579 -13.26855 -12.84669 -12.69514 -12.47856 -12.45357 -12.31322 -12.19949 -11.97748 -11.85870 -11.71234 -11.58489 -11.56903 -11.40331 -11.28439 -11.10760 -10.89709 -10.82183 -10.68592 -10.57569 -8.84714 -8.20569 -6.20036 1.34543 1.36568 1.47607 2.39760 2.99691 3.14454 3.78476 3.91838 4.00904 4.14778 4.22483 4.28163 4.30418 4.41797 4.44033 4.52995 4.59862 4.71498 4.75454 4.78195 4.85526 4.89601 4.94010 4.98955 5.00855 5.09032 5.13350 5.14529 5.21624 5.23488 5.27415 5.29754 5.34533 5.39853 5.42247 5.46666 5.49992 5.53130 5.54372 5.60432 5.65040 5.74758 5.84934 5.90195 6.33401 6.47556 6.52894 6.87180 7.42086 8.95801 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.005220 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.069478 B = 5363.021418 C = 5666.438680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.097 3.903 4 H 0.028 0.972 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.145 4.145 9 C 0.043 3.957 10 N -0.536 5.536 11 C 0.079 3.921 12 C -0.039 4.039 13 C -0.123 4.123 14 C -0.101 4.101 15 C -0.003 4.003 16 C -0.499 4.499 17 H 0.044 0.956 18 C 0.002 3.998 19 N -0.955 5.955 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.252 1.252 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.030 0.970 43 H 0.043 0.957 44 H 0.033 0.967 45 H 0.021 0.979 46 H 0.071 0.929 47 H 0.009 0.991 48 H 0.007 0.993 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 6.030 -22.882 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.010 4.010 4 H 0.046 0.954 5 C -0.145 4.145 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.184 4.184 9 C -0.084 4.084 10 N -0.260 5.260 11 C -0.050 4.050 12 C -0.040 4.040 13 C -0.180 4.180 14 C -0.158 4.158 15 C -0.041 4.041 16 C -0.537 4.537 17 H 0.063 0.937 18 C -0.194 4.194 19 N -0.597 5.597 20 Si 0.763 3.237 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.175 1.175 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.040 0.960 46 H 0.090 0.910 47 H 0.028 0.972 48 H 0.025 0.975 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.946 5.862 -22.665 23.491 hybrid contribution 1.529 -0.374 0.886 1.807 sum 3.476 5.488 -21.779 22.727 Atomic orbital electron populations 1.21707 0.95143 1.00825 1.02298 1.21683 0.97277 0.95452 1.01075 1.21299 0.96736 0.94196 0.88797 0.95449 1.21442 0.98728 0.98167 0.96149 1.20583 0.98988 0.96208 0.99764 1.20516 1.01836 0.98111 0.94478 1.21889 0.98613 1.00955 0.96934 1.22308 0.97768 0.86672 1.01631 1.61577 1.56334 1.04976 1.03155 1.21998 0.93447 0.98574 0.90935 1.20265 0.95673 0.95363 0.92716 1.21876 1.00225 0.95739 1.00142 1.21503 0.96551 0.98402 0.99373 1.19603 0.95242 0.95259 0.94029 1.21419 1.02339 1.35067 0.94893 0.93750 1.25890 1.01359 0.96864 0.95258 1.70063 1.39703 1.47463 1.02473 0.85830 0.80658 0.78450 0.78715 1.19640 1.21406 1.17534 0.92102 0.93967 0.92276 0.91040 0.93690 0.91097 0.90150 0.90982 0.92979 0.91652 0.91919 0.91353 0.93179 0.90448 0.90688 0.92199 0.95262 0.91201 0.95057 0.93841 0.94818 0.96024 0.91044 0.97232 0.97451 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.42 71.98 0.68 -2.44 16 2 C -0.12 -2.59 5.41 30.60 0.17 -2.43 16 3 C 0.10 2.10 1.42 43.89 0.06 2.17 16 4 H 0.03 0.64 6.47 -2.39 -0.02 0.62 16 5 C -0.11 -1.84 4.01 30.21 0.12 -1.72 16 6 C -0.12 -1.81 5.30 28.85 0.15 -1.65 16 7 C -0.11 -1.78 5.30 28.86 0.15 -1.63 16 8 C -0.14 -2.87 5.48 30.21 0.17 -2.70 16 9 C 0.04 0.99 4.19 85.27 0.36 1.35 16 10 N -0.54 -13.59 2.66 -875.22 -2.33 -15.93 16 11 C 0.08 2.46 3.86 86.30 0.33 2.80 16 12 C -0.04 -1.51 0.61 -52.18 -0.03 -1.54 16 13 C -0.12 -4.57 6.76 71.98 0.49 -4.08 16 14 C -0.10 -3.88 7.79 71.98 0.56 -3.32 16 15 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 16 C -0.50 -28.49 8.09 25.60 0.21 -28.28 16 17 H 0.04 2.78 5.96 -2.91 -0.02 2.76 16 18 C 0.00 0.11 5.47 84.65 0.46 0.57 16 19 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 20 Si 0.94 45.50 27.47 68.60 1.88 47.38 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 24 H 0.06 1.12 6.97 -2.39 -0.02 1.10 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.51 5.65 -2.39 -0.01 1.49 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.19 6.39 -2.39 -0.02 1.17 16 29 H 0.07 1.31 7.08 -2.39 -0.02 1.29 16 30 H 0.08 1.21 7.20 -2.39 -0.02 1.19 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.86 7.51 -2.39 -0.02 0.84 16 33 H 0.06 1.00 7.52 -2.39 -0.02 0.98 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.12 6.79 -2.38 -0.02 1.10 16 37 H 0.08 1.99 4.15 -2.39 -0.01 1.98 16 38 H 0.07 1.60 6.58 -2.38 -0.02 1.59 16 39 H 0.06 1.92 6.10 -2.39 -0.01 1.90 16 40 H 0.03 0.92 7.53 -2.39 -0.02 0.91 16 41 H 0.07 2.24 6.18 -2.39 -0.01 2.23 16 42 H 0.03 1.37 6.38 -2.38 -0.02 1.35 16 43 H 0.04 1.51 7.60 -2.38 -0.02 1.50 16 44 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.02 0.94 6.62 -2.39 -0.02 0.93 16 46 H 0.07 2.41 5.71 -2.38 -0.01 2.40 16 47 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 48 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 49 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -63.03 337.38 4.66 -58.37 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.84 Total: 13.62 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 3.97 Total: -42.98 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -2.03 Total: -76.38 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -63.03 4.66 -58.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093530273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.457 kcal (2) G-P(sol) polarization free energy of solvation -63.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds