Wall clock time and date at job start Mon Mar 30 2020 07:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47366 * 2 1 4 4 H 1.09007 * 109.47150 * 180.78528 * 3 2 1 5 5 C 1.50704 * 109.46864 * 300.78267 * 3 2 1 6 6 H 1.07992 * 119.99715 * 120.00240 * 5 3 2 7 7 C 1.37880 * 120.00001 * 300.00006 * 5 3 2 8 8 N 1.31510 * 119.99716 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 119.99998 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.47050 * 90.00110 * 9 7 5 11 11 H 1.48501 * 109.47355 * 209.99755 * 9 7 5 12 12 H 1.48501 * 109.47527 * 330.00377 * 9 7 5 13 13 N 1.46893 * 109.47336 * 60.78460 * 3 2 1 14 14 C 1.46901 * 111.00048 * 62.85170 * 13 3 2 15 15 C 1.53000 * 109.47386 * 229.96589 * 14 13 3 16 16 C 1.53001 * 109.47216 * 185.53542 * 15 14 13 17 17 C 1.52992 * 109.46827 * 65.00526 * 16 15 14 18 18 C 1.52994 * 109.46967 * 185.00364 * 16 15 14 19 19 C 1.46900 * 111.00212 * 186.80983 * 13 3 2 20 20 C 1.54890 * 110.75518 * 176.32856 * 19 13 3 21 21 C 1.54263 * 104.31053 * 156.32394 * 20 19 13 22 22 C 1.53874 * 106.59923 * 336.32259 * 21 20 19 23 23 C 1.54255 * 106.59901 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46937 * 305.02401 * 1 2 3 25 25 H 1.08998 * 109.47026 * 65.02075 * 1 2 3 26 26 H 1.09004 * 109.47533 * 185.02157 * 1 2 3 27 27 H 1.09002 * 109.47301 * 239.99596 * 2 1 3 28 28 H 1.08999 * 109.46967 * 119.99913 * 2 1 3 29 29 H 0.97002 * 119.99947 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47315 * 349.96994 * 14 13 3 31 31 H 1.09002 * 109.46805 * 109.97230 * 14 13 3 32 32 H 1.08999 * 109.47632 * 305.54186 * 15 14 13 33 33 H 1.09005 * 109.46774 * 65.54049 * 15 14 13 34 34 H 1.08993 * 109.47034 * 305.00443 * 16 15 14 35 35 H 1.09006 * 109.47454 * 59.99961 * 17 16 15 36 36 H 1.08999 * 109.47250 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47385 * 299.99851 * 17 16 15 38 38 H 1.09004 * 109.47642 * 60.00251 * 18 16 15 39 39 H 1.09004 * 109.47430 * 179.97438 * 18 16 15 40 40 H 1.09002 * 109.47826 * 300.00098 * 18 16 15 41 41 H 1.08995 * 110.81493 * 52.98962 * 19 13 3 42 42 H 1.08998 * 110.49025 * 37.57603 * 20 19 13 43 43 H 1.09005 * 110.48423 * 275.06343 * 20 19 13 44 44 H 1.09003 * 110.03211 * 95.60620 * 21 20 19 45 45 H 1.09008 * 110.03227 * 217.03572 * 21 20 19 46 46 H 1.08995 * 110.03244 * 119.28638 * 22 21 20 47 47 H 1.09005 * 110.03082 * 240.66634 * 22 21 20 48 48 H 1.08997 * 110.48921 * 142.29245 * 23 22 21 49 49 H 1.09001 * 110.49031 * 264.80242 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0141 5 6 1.5218 2.1584 -1.2207 6 1 0.9024 3.0360 -1.1096 7 6 1.8387 1.6930 -2.4793 8 7 1.3870 2.3182 -3.5445 9 14 2.9109 0.1755 -2.6714 10 1 2.0522 -1.0355 -2.7110 11 1 3.6864 0.2738 -3.9340 12 1 3.8464 0.0815 -1.5219 13 7 1.5659 2.1295 1.2087 14 6 2.1075 1.4984 2.4197 15 6 0.9692 1.2235 3.4043 16 6 1.5479 0.6943 4.7181 17 6 2.3979 1.7830 5.3760 18 6 0.4055 0.3021 5.6572 19 6 1.8991 3.5596 1.1664 20 6 1.3172 4.2955 2.3988 21 6 2.2069 5.5465 2.5512 22 6 3.5484 5.2170 1.8733 23 6 3.4269 3.7776 1.3321 24 1 -0.3633 0.5898 0.8416 25 1 -0.3633 0.4340 -0.9315 26 1 -0.3634 -1.0237 0.0900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6096 1.9906 -4.4299 30 1 2.5928 0.5592 2.1539 31 1 2.8351 2.1651 2.8825 32 1 0.4219 2.1468 3.5941 33 1 0.2931 0.4811 2.9800 34 1 2.1683 -0.1788 4.5162 35 1 1.7775 2.6562 5.5778 36 1 2.8099 1.4062 6.3122 37 1 3.2118 2.0625 4.7070 38 1 -0.2002 -0.4735 5.1885 39 1 0.8177 -0.0753 6.5930 40 1 -0.2151 1.1752 5.8591 41 1 1.5425 4.0131 0.2416 42 1 1.3872 3.6671 3.2867 43 1 0.2817 4.5837 2.2172 44 1 1.7394 6.3993 2.0590 45 1 2.3659 5.7653 3.6072 46 1 3.7320 5.9099 1.0522 47 1 4.3586 5.2767 2.6001 48 1 3.9317 3.6877 0.3703 49 1 3.8396 3.0653 2.0465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094848790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:16 Heat of formation + Delta-G solvation = -16.337755 kcal Electronic energy + Delta-G solvation = -22844.800480 eV Core-core repulsion = 19999.054531 eV Total energy + Delta-G solvation = -2845.745949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.16480 -36.31468 -35.56501 -32.54116 -31.30389 -29.14031 -28.19485 -27.10681 -26.89374 -25.59536 -23.09037 -22.45444 -20.20705 -19.78238 -19.34752 -18.43106 -16.41743 -16.22365 -15.07224 -14.88203 -14.75899 -14.01704 -13.87642 -13.76276 -13.26593 -12.87141 -12.80957 -12.68218 -12.47445 -12.18576 -12.00985 -11.78275 -11.33291 -11.15756 -11.05602 -10.88543 -10.79723 -10.73396 -10.60921 -10.56527 -10.48350 -10.34644 -10.20857 -9.96987 -9.86320 -9.73901 -9.54656 -9.27191 -8.82012 -8.49767 -7.16429 -6.03926 -4.00553 3.28473 3.38141 3.39450 4.42335 4.64129 5.02940 5.10515 5.12441 5.14405 5.19272 5.28794 5.44837 5.58210 5.66068 5.79900 5.83578 5.88703 5.91736 5.97744 5.99211 6.06160 6.08242 6.11426 6.13994 6.15371 6.21367 6.26432 6.29442 6.34100 6.37651 6.39942 6.45373 6.50965 6.59962 6.67761 6.70810 6.82403 6.84918 6.96018 7.12830 7.17299 7.25146 7.49260 7.68256 8.06691 8.22902 8.71406 9.02886 9.59216 11.08679 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.007584 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.217166 B = 3691.317836 C = 4757.962792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.187 3.813 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.270 1.270 13 N -0.511 5.511 14 C 0.037 3.963 15 C -0.106 4.106 16 C -0.099 4.099 17 C -0.146 4.146 18 C -0.144 4.144 19 C 0.095 3.905 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.159 4.159 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 0.122 15.513 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.080 3.920 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.196 1.196 13 N -0.233 5.233 14 C -0.091 4.091 15 C -0.144 4.144 16 C -0.118 4.118 17 C -0.204 4.204 18 C -0.201 4.201 19 C -0.014 4.014 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.198 4.198 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.170 0.072 15.306 15.351 hybrid contribution 1.554 -0.887 -0.348 1.823 sum 2.724 -0.815 14.958 15.226 Atomic orbital electron populations 1.21479 0.95380 0.97953 1.03363 1.21873 0.97594 0.98188 0.98041 1.19701 0.92786 0.90706 0.88842 0.98614 1.20941 1.31610 1.12997 0.87866 0.89914 1.24871 0.95560 0.96544 0.95962 1.69876 1.45657 1.40416 0.97929 0.86979 0.81068 0.84211 0.76684 1.20543 1.22679 1.19558 1.61921 1.58576 1.01276 1.01509 1.22367 0.95821 0.98615 0.92297 1.21730 0.98401 1.01255 0.93006 1.21128 0.96698 0.98256 0.95718 1.21881 0.99925 0.98705 0.99851 1.21812 0.98365 1.01160 0.98793 1.22761 0.91185 0.88923 0.98520 1.22577 0.98711 0.95870 0.99092 1.22096 0.96010 0.98407 0.99505 1.22016 0.96849 0.97473 0.99347 1.23092 1.00178 0.95709 1.00826 0.92067 0.91731 0.96254 0.93993 0.94784 0.92766 0.92918 0.92943 0.91638 0.91842 0.91781 0.92848 0.93487 0.92523 0.92827 0.93351 0.92862 0.87690 0.91254 0.91999 0.92276 0.92773 0.92200 0.92975 0.91481 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.47 37.15 0.35 -2.24 16 2 C -0.12 -2.60 4.98 -26.74 -0.13 -2.73 16 3 C 0.19 4.26 0.97 -68.87 -0.07 4.20 16 4 H 0.00 -0.09 6.78 -51.92 -0.35 -0.44 16 5 C -0.50 -13.23 7.23 -34.44 -0.25 -13.48 16 6 H 0.08 2.41 6.49 -52.49 -0.34 2.07 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 9 Si 0.88 21.94 24.37 -169.99 -4.14 17.80 16 10 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 13 N -0.51 -9.91 3.44 -217.53 -0.75 -10.66 16 14 C 0.04 0.61 3.61 -3.82 -0.01 0.60 16 15 C -0.11 -1.50 4.66 -26.73 -0.12 -1.63 16 16 C -0.10 -1.17 2.92 -90.63 -0.26 -1.44 16 17 C -0.15 -1.61 8.95 37.15 0.33 -1.27 16 18 C -0.14 -1.51 9.19 37.15 0.34 -1.17 16 19 C 0.10 1.76 2.67 -65.54 -0.18 1.58 16 20 C -0.12 -1.90 5.92 -25.07 -0.15 -2.05 16 21 C -0.12 -1.65 6.80 -25.61 -0.17 -1.83 16 22 C -0.12 -1.70 6.80 -25.62 -0.17 -1.88 16 23 C -0.16 -2.72 5.40 -24.90 -0.13 -2.86 16 24 H 0.06 1.23 6.87 -51.93 -0.36 0.87 16 25 H 0.06 1.51 7.38 -51.93 -0.38 1.13 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.98 3.29 -51.93 -0.17 0.81 16 28 H 0.03 0.67 6.35 -51.93 -0.33 0.34 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.05 0.92 5.92 -51.93 -0.31 0.61 16 31 H 0.05 0.82 3.04 -51.93 -0.16 0.66 16 32 H 0.07 0.95 6.31 -51.93 -0.33 0.62 16 33 H 0.06 0.97 7.54 -51.93 -0.39 0.58 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.66 6.45 -51.93 -0.34 0.32 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 2.29 5.95 -51.93 -0.31 1.99 16 42 H 0.07 1.01 4.93 -51.93 -0.26 0.75 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.06 1.00 5.65 -51.93 -0.29 0.71 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -27.68 344.41 -8.64 -36.32 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.99 Total: 1.81 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -0.73 Total: -24.27 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.02 Total: -36.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.68 -8.64 -36.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094848790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.984 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds