Wall clock time and date at job start Mon Mar 30 2020 07:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47366 * 2 1 4 4 H 1.09007 * 109.47150 * 180.78528 * 3 2 1 5 5 C 1.50704 * 109.46864 * 300.78267 * 3 2 1 6 6 H 1.07992 * 119.99715 * 120.00240 * 5 3 2 7 7 C 1.37880 * 120.00001 * 300.00006 * 5 3 2 8 8 N 1.31510 * 119.99716 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 119.99998 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.47050 * 90.00110 * 9 7 5 11 11 H 1.48501 * 109.47355 * 209.99755 * 9 7 5 12 12 H 1.48501 * 109.47527 * 330.00377 * 9 7 5 13 13 N 1.46893 * 109.47336 * 60.78460 * 3 2 1 14 14 C 1.46901 * 111.00048 * 62.85170 * 13 3 2 15 15 C 1.53000 * 109.47386 * 229.96589 * 14 13 3 16 16 C 1.53001 * 109.47216 * 185.53542 * 15 14 13 17 17 C 1.52992 * 109.46827 * 65.00526 * 16 15 14 18 18 C 1.52994 * 109.46967 * 185.00364 * 16 15 14 19 19 C 1.46900 * 111.00212 * 186.80983 * 13 3 2 20 20 C 1.54890 * 110.75518 * 176.32856 * 19 13 3 21 21 C 1.54263 * 104.31053 * 156.32394 * 20 19 13 22 22 C 1.53874 * 106.59923 * 336.32259 * 21 20 19 23 23 C 1.54255 * 106.59901 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46937 * 305.02401 * 1 2 3 25 25 H 1.08998 * 109.47026 * 65.02075 * 1 2 3 26 26 H 1.09004 * 109.47533 * 185.02157 * 1 2 3 27 27 H 1.09002 * 109.47301 * 239.99596 * 2 1 3 28 28 H 1.08999 * 109.46967 * 119.99913 * 2 1 3 29 29 H 0.97002 * 119.99947 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47315 * 349.96994 * 14 13 3 31 31 H 1.09002 * 109.46805 * 109.97230 * 14 13 3 32 32 H 1.08999 * 109.47632 * 305.54186 * 15 14 13 33 33 H 1.09005 * 109.46774 * 65.54049 * 15 14 13 34 34 H 1.08993 * 109.47034 * 305.00443 * 16 15 14 35 35 H 1.09006 * 109.47454 * 59.99961 * 17 16 15 36 36 H 1.08999 * 109.47250 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47385 * 299.99851 * 17 16 15 38 38 H 1.09004 * 109.47642 * 60.00251 * 18 16 15 39 39 H 1.09004 * 109.47430 * 179.97438 * 18 16 15 40 40 H 1.09002 * 109.47826 * 300.00098 * 18 16 15 41 41 H 1.08995 * 110.81493 * 52.98962 * 19 13 3 42 42 H 1.08998 * 110.49025 * 37.57603 * 20 19 13 43 43 H 1.09005 * 110.48423 * 275.06343 * 20 19 13 44 44 H 1.09003 * 110.03211 * 95.60620 * 21 20 19 45 45 H 1.09008 * 110.03227 * 217.03572 * 21 20 19 46 46 H 1.08995 * 110.03244 * 119.28638 * 22 21 20 47 47 H 1.09005 * 110.03082 * 240.66634 * 22 21 20 48 48 H 1.08997 * 110.48921 * 142.29245 * 23 22 21 49 49 H 1.09001 * 110.49031 * 264.80242 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0141 5 6 1.5218 2.1584 -1.2207 6 1 0.9024 3.0360 -1.1096 7 6 1.8387 1.6930 -2.4793 8 7 1.3870 2.3182 -3.5445 9 14 2.9109 0.1755 -2.6714 10 1 2.0522 -1.0355 -2.7110 11 1 3.6864 0.2738 -3.9340 12 1 3.8464 0.0815 -1.5219 13 7 1.5659 2.1295 1.2087 14 6 2.1075 1.4984 2.4197 15 6 0.9692 1.2235 3.4043 16 6 1.5479 0.6943 4.7181 17 6 2.3979 1.7830 5.3760 18 6 0.4055 0.3021 5.6572 19 6 1.8991 3.5596 1.1664 20 6 1.3172 4.2955 2.3988 21 6 2.2069 5.5465 2.5512 22 6 3.5484 5.2170 1.8733 23 6 3.4269 3.7776 1.3321 24 1 -0.3633 0.5898 0.8416 25 1 -0.3633 0.4340 -0.9315 26 1 -0.3634 -1.0237 0.0900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6096 1.9906 -4.4299 30 1 2.5928 0.5592 2.1539 31 1 2.8351 2.1651 2.8825 32 1 0.4219 2.1468 3.5941 33 1 0.2931 0.4811 2.9800 34 1 2.1683 -0.1788 4.5162 35 1 1.7775 2.6562 5.5778 36 1 2.8099 1.4062 6.3122 37 1 3.2118 2.0625 4.7070 38 1 -0.2002 -0.4735 5.1885 39 1 0.8177 -0.0753 6.5930 40 1 -0.2151 1.1752 5.8591 41 1 1.5425 4.0131 0.2416 42 1 1.3872 3.6671 3.2867 43 1 0.2817 4.5837 2.2172 44 1 1.7394 6.3993 2.0590 45 1 2.3659 5.7653 3.6072 46 1 3.7320 5.9099 1.0522 47 1 4.3586 5.2767 2.6001 48 1 3.9317 3.6877 0.3703 49 1 3.8396 3.0653 2.0465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094848790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:15 Heat of formation + Delta-G solvation = -30.996578 kcal Electronic energy + Delta-G solvation = -22845.436134 eV Core-core repulsion = 19999.054531 eV Total energy + Delta-G solvation = -2846.381603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61774 -37.44708 -37.05311 -34.39511 -33.07412 -30.48781 -29.48080 -28.54651 -27.93572 -27.17079 -24.83243 -23.85614 -21.66418 -21.07395 -20.46025 -20.04391 -18.23708 -17.93751 -16.59542 -16.36067 -15.87498 -15.59084 -15.41897 -14.89593 -14.76599 -14.49452 -14.32054 -14.06232 -13.89812 -13.37970 -13.18768 -12.95420 -12.82551 -12.71376 -12.49204 -12.38050 -12.24456 -12.14258 -12.03325 -11.92403 -11.84837 -11.61461 -11.46994 -11.44610 -11.31389 -11.19115 -11.07061 -10.93529 -10.68240 -10.60613 -8.74219 -8.24130 -6.23035 1.27306 1.31323 1.39921 2.32053 3.09766 3.22905 3.86493 3.90401 4.03509 4.09999 4.19944 4.25411 4.31635 4.40423 4.45119 4.57698 4.62184 4.70062 4.75380 4.77659 4.81379 4.84437 4.87285 4.92901 4.95248 5.00352 5.06279 5.09548 5.13024 5.14766 5.19527 5.24495 5.26868 5.33576 5.35958 5.38744 5.43630 5.46925 5.53826 5.59023 5.61661 5.70368 5.72841 5.82671 6.15186 6.55338 6.82972 6.86884 7.40303 8.92071 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.007584 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.217166 B = 3691.317836 C = 4757.962792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C 0.193 3.807 4 H -0.019 1.019 5 C -0.482 4.482 6 H 0.044 0.956 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.934 3.066 10 H -0.268 1.268 11 H -0.302 1.302 12 H -0.257 1.257 13 N -0.517 5.517 14 C 0.040 3.960 15 C -0.098 4.098 16 C -0.095 4.095 17 C -0.145 4.145 18 C -0.142 4.142 19 C 0.088 3.912 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.155 4.155 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.062 0.938 29 H 0.262 0.738 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.053 0.947 47 H 0.077 0.923 48 H 0.034 0.966 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -0.811 18.885 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.158 4.158 3 C 0.085 3.915 4 H -0.001 1.001 5 C -0.521 4.521 6 H 0.062 0.938 7 C -0.180 4.180 8 N -0.590 5.590 9 Si 0.763 3.237 10 H -0.195 1.195 11 H -0.230 1.230 12 H -0.181 1.181 13 N -0.239 5.239 14 C -0.088 4.088 15 C -0.136 4.136 16 C -0.114 4.114 17 C -0.202 4.202 18 C -0.199 4.199 19 C -0.021 4.021 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.195 4.195 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.053 0.947 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.944 -0.863 18.711 18.832 hybrid contribution 1.269 -0.522 -1.367 1.937 sum 3.213 -1.386 17.344 17.693 Atomic orbital electron populations 1.21367 0.94747 0.99484 1.01651 1.21843 0.98133 0.97074 0.98714 1.19479 0.91589 0.91543 0.88856 1.00124 1.21118 1.29737 1.11577 0.89621 0.93779 1.25586 0.97133 0.99474 0.95760 1.70020 1.48000 1.42526 0.98443 0.86075 0.79752 0.81133 0.76745 1.19459 1.23028 1.18109 1.61907 1.58918 1.01681 1.01398 1.22445 0.96967 0.98160 0.91210 1.21649 0.97299 1.01010 0.93641 1.21091 0.97249 0.98471 0.94616 1.21863 0.99545 0.98513 1.00272 1.21784 0.97847 1.01246 0.99008 1.22679 0.92596 0.88611 0.98228 1.22498 0.98623 0.96495 0.97601 1.22085 0.94780 0.97362 1.01199 1.22003 0.98360 0.95089 0.99800 1.23019 0.98567 0.98223 0.99644 0.91535 0.95241 0.93454 0.95254 0.91955 0.92897 0.93527 0.91748 0.91757 0.92905 0.91838 0.92477 0.92018 0.93211 0.93083 0.91927 0.92631 0.92344 0.89794 0.92545 0.92077 0.89890 0.92765 0.90476 0.94703 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 9.47 71.98 0.68 -4.02 16 2 C -0.12 -5.09 4.98 30.59 0.15 -4.94 16 3 C 0.19 8.91 0.97 44.17 0.04 8.96 16 4 H -0.02 -0.91 6.78 -2.38 -0.02 -0.93 16 5 C -0.48 -26.93 7.23 25.60 0.19 -26.74 16 6 H 0.04 2.76 6.49 -2.91 -0.02 2.74 16 7 C 0.02 1.00 5.45 84.66 0.46 1.46 16 8 N -0.95 -59.50 13.96 21.45 0.30 -59.21 16 9 Si 0.93 45.97 24.37 68.60 1.67 47.64 16 10 H -0.27 -12.68 6.87 99.48 0.68 -12.00 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 12 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16 13 N -0.52 -20.03 3.44 -842.12 -2.90 -22.93 16 14 C 0.04 1.23 3.61 86.30 0.31 1.54 16 15 C -0.10 -2.55 4.66 30.59 0.14 -2.40 16 16 C -0.10 -1.95 2.92 -10.80 -0.03 -1.98 16 17 C -0.14 -2.64 8.95 71.98 0.64 -1.99 16 18 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 19 C 0.09 3.31 2.67 46.32 0.12 3.43 16 20 C -0.11 -3.34 5.92 31.67 0.19 -3.15 16 21 C -0.12 -2.87 6.80 31.32 0.21 -2.65 16 22 C -0.11 -3.09 6.80 31.31 0.21 -2.88 16 23 C -0.16 -5.29 5.40 31.78 0.17 -5.12 16 24 H 0.07 2.61 6.87 -2.39 -0.02 2.59 16 25 H 0.03 1.38 7.38 -2.39 -0.02 1.36 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.32 3.29 -2.39 -0.01 1.31 16 28 H 0.06 2.30 6.35 -2.39 -0.02 2.28 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.05 1.51 5.92 -2.39 -0.01 1.50 16 31 H 0.06 1.85 3.04 -2.39 -0.01 1.84 16 32 H 0.06 1.70 6.31 -2.39 -0.02 1.68 16 33 H 0.05 1.49 7.54 -2.38 -0.02 1.48 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.97 6.45 -2.39 -0.02 0.96 16 38 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 2.74 5.95 -2.39 -0.01 2.73 16 42 H 0.08 2.21 4.93 -2.39 -0.01 2.20 16 43 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.07 2.26 5.65 -2.39 -0.01 2.24 16 Total: -1.00 -62.64 344.41 4.05 -58.59 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.82 Total: 18.23 kcal Atomic # 6 Polarization: -46.49 SS G_CDS: 4.16 Total: -42.33 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.60 Total: -82.14 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal Total: -62.64 4.05 -58.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094848790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.592 kcal (2) G-P(sol) polarization free energy of solvation -62.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds