Wall clock time and date at job start Mon Mar 30 2020 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47293 * 2 1 4 4 H 1.08999 * 109.46928 * 306.55777 * 3 2 1 5 5 C 1.50697 * 109.47425 * 186.56146 * 3 2 1 6 6 H 1.08002 * 120.00367 * 245.93488 * 5 3 2 7 7 C 1.37879 * 120.00048 * 65.92925 * 5 3 2 8 8 N 1.31517 * 119.99906 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00185 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47408 * 89.99964 * 9 7 5 11 11 H 1.48501 * 109.47219 * 210.00393 * 9 7 5 12 12 H 1.48504 * 109.46959 * 330.00026 * 9 7 5 13 13 N 1.46893 * 109.47452 * 66.55628 * 3 2 1 14 14 C 1.46902 * 110.99749 * 38.18814 * 13 3 2 15 15 C 1.53001 * 109.47341 * 161.77250 * 14 13 3 16 16 C 1.52999 * 109.47344 * 186.44086 * 15 14 13 17 17 C 1.52999 * 109.47118 * 64.99522 * 16 15 14 18 18 C 1.52999 * 109.47441 * 184.99976 * 16 15 14 19 19 C 1.46902 * 111.00460 * 274.23482 * 13 3 2 20 20 C 1.54268 * 110.02733 * 314.57320 * 19 13 3 21 21 C 1.54889 * 104.19720 * 217.10496 * 20 19 13 22 22 C 1.54888 * 102.74674 * 37.94515 * 21 20 19 23 23 C 1.53880 * 110.03203 * 197.41126 * 19 13 3 24 24 H 1.09000 * 109.47388 * 42.59429 * 1 2 3 25 25 H 1.08999 * 109.47356 * 162.59420 * 1 2 3 26 26 H 1.09003 * 109.47342 * 282.58948 * 1 2 3 27 27 H 1.09003 * 109.47142 * 239.99749 * 2 1 3 28 28 H 1.09003 * 109.47278 * 119.99670 * 2 1 3 29 29 H 0.97004 * 119.99771 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47738 * 41.76823 * 14 13 3 31 31 H 1.09007 * 109.46897 * 281.76855 * 14 13 3 32 32 H 1.08999 * 109.46605 * 306.43850 * 15 14 13 33 33 H 1.08994 * 109.47521 * 66.43959 * 15 14 13 34 34 H 1.09001 * 109.47247 * 304.99947 * 16 15 14 35 35 H 1.09007 * 109.47293 * 300.00101 * 17 16 15 36 36 H 1.08996 * 109.47164 * 60.00220 * 17 16 15 37 37 H 1.08999 * 109.47195 * 180.02562 * 17 16 15 38 38 H 1.09001 * 109.47176 * 59.99628 * 18 16 15 39 39 H 1.08993 * 109.47520 * 180.02562 * 18 16 15 40 40 H 1.09009 * 109.46955 * 299.99912 * 18 16 15 41 41 H 1.08997 * 110.01510 * 76.01674 * 19 13 3 42 42 H 1.08997 * 110.48909 * 335.78485 * 20 19 13 43 43 H 1.09000 * 110.48560 * 98.42513 * 20 19 13 44 44 H 1.09005 * 110.75508 * 279.63217 * 21 20 19 45 45 H 1.08992 * 110.75742 * 156.25898 * 21 20 19 46 46 H 1.08998 * 110.48851 * 203.38304 * 22 21 20 47 47 H 1.09002 * 110.60184 * 80.79291 * 22 21 20 48 48 H 1.08996 * 110.02498 * 238.56602 * 23 19 13 49 49 H 1.08995 * 110.03140 * 359.94481 * 23 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5840 1.9890 -0.8255 5 6 3.5382 1.4456 -0.1623 6 1 4.1679 1.7953 0.6424 7 6 4.1051 1.0019 -1.3383 8 7 3.3384 0.5764 -2.3184 9 14 5.9623 1.0051 -1.5393 10 1 6.5128 -0.2933 -1.0742 11 1 6.3049 1.2039 -2.9705 12 1 6.5455 2.1074 -0.7329 13 7 1.6838 2.0878 1.2706 14 6 1.8160 1.1493 2.3929 15 6 1.8880 1.9313 3.7060 16 6 2.1860 0.9687 4.8573 17 6 3.5790 0.3644 4.6691 18 6 2.1349 1.7289 6.1840 19 6 0.3286 2.6519 1.2129 20 6 0.1316 3.4191 -0.1110 21 6 -0.7381 4.6388 0.2826 22 6 -0.1737 5.0270 1.6718 23 6 0.1345 3.6743 2.3464 24 1 -0.3634 0.7565 -0.6955 25 1 -0.3634 -0.9806 -0.3074 26 1 -0.3634 0.2240 1.0030 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7372 0.2646 -3.1459 30 1 2.7255 0.5614 2.2699 31 1 0.9530 0.4836 2.4134 32 1 2.6802 2.6771 3.6416 33 1 0.9347 2.4284 3.8856 34 1 1.4425 0.1717 4.8663 35 1 3.6154 -0.1773 3.7239 36 1 4.3226 1.1613 4.6601 37 1 3.7912 -0.3217 5.4890 38 1 1.1425 2.1595 6.3181 39 1 2.3477 1.0433 7.0041 40 1 2.8785 2.5259 6.1750 41 1 -0.4109 1.8557 1.2975 42 1 1.0920 3.7476 -0.5081 43 1 -0.3903 2.7971 -0.8382 44 1 -1.7883 4.3563 0.3575 45 1 -0.6059 5.4533 -0.4294 46 1 -0.9185 5.5784 2.2456 47 1 0.7370 5.6162 1.5647 48 1 -0.6997 3.3746 2.9806 49 1 1.0455 3.7512 2.9399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094848791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:18 Heat of formation + Delta-G solvation = -16.066882 kcal Electronic energy + Delta-G solvation = -22769.370971 eV Core-core repulsion = 19923.636769 eV Total energy + Delta-G solvation = -2845.734203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.16739 -36.27993 -35.36503 -32.46160 -30.94515 -29.05529 -27.87958 -27.49032 -26.83273 -25.43575 -22.91211 -21.94308 -20.35681 -19.95731 -19.14841 -18.30293 -16.30150 -15.70770 -15.22646 -14.73121 -14.41634 -14.13173 -14.08040 -13.38548 -13.24388 -12.92437 -12.73826 -12.43364 -12.17339 -11.96860 -11.55042 -11.40596 -11.31520 -11.20047 -10.91310 -10.83772 -10.70519 -10.65772 -10.57207 -10.52932 -10.29069 -10.19297 -10.17732 -9.97670 -9.95535 -9.66200 -9.41563 -9.34257 -8.79167 -8.25830 -6.96045 -5.94435 -3.95551 3.34240 3.41210 3.45599 4.47074 4.90779 5.11225 5.16433 5.20505 5.22336 5.28126 5.36819 5.50688 5.79438 5.83693 5.87012 5.94952 5.98900 6.02970 6.05072 6.07189 6.09803 6.13866 6.16274 6.22726 6.26534 6.31710 6.35067 6.41151 6.44939 6.48582 6.51195 6.52996 6.62680 6.67884 6.80659 6.83083 6.86162 6.93857 7.02650 7.10349 7.32215 7.58137 7.72674 7.94900 8.32444 8.50544 8.72573 9.12375 9.68595 11.13315 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.008143 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.885241 B = 3437.726911 C = 4689.485850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.147 4.147 3 C 0.209 3.791 4 H 0.052 0.948 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.521 5.521 14 C 0.062 3.938 15 C -0.120 4.120 16 C -0.097 4.097 17 C -0.148 4.148 18 C -0.143 4.143 19 C 0.075 3.925 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.127 4.127 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.258 0.742 30 H 0.079 0.921 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 3.224 10.487 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C 0.103 3.897 4 H 0.070 0.930 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.245 5.245 14 C -0.066 4.066 15 C -0.158 4.158 16 C -0.116 4.116 17 C -0.205 4.205 18 C -0.201 4.201 19 C -0.034 4.034 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.165 4.165 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.926 3.545 10.367 12.456 hybrid contribution 0.405 -0.864 -0.389 1.030 sum -5.521 2.681 9.978 11.715 Atomic orbital electron populations 1.22105 0.99526 0.99666 0.99566 1.22245 0.91736 1.02554 1.02144 1.19514 0.95580 0.88561 0.86008 0.92992 1.21153 0.91259 1.40666 0.99813 0.92200 1.24918 0.97688 0.95796 0.95966 1.69925 1.34444 1.44049 1.05161 0.86621 0.86218 0.78237 0.77058 1.20989 1.21470 1.19931 1.62440 1.21522 1.35289 1.05216 1.22085 1.00516 0.93809 0.90204 1.22080 1.01810 0.98118 0.93806 1.21120 0.97515 0.98028 0.94987 1.21882 0.96548 1.00569 1.01517 1.21819 1.01299 1.00058 0.96910 1.22416 0.91356 0.95490 0.94110 1.22527 1.00393 0.95665 0.96833 1.22480 0.98760 0.98255 0.96803 1.22308 1.00014 0.97427 0.95985 1.22612 1.01220 0.94595 0.98043 0.93422 0.95005 0.94249 0.89721 0.94263 0.93196 0.90283 0.96131 0.91475 0.91644 0.91979 0.91885 0.92764 0.93714 0.93149 0.93364 0.92854 0.94235 0.89724 0.92383 0.92471 0.92238 0.92964 0.91755 0.93370 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.32 37.15 0.31 -2.68 16 2 C -0.15 -3.39 4.78 -26.74 -0.13 -3.52 16 3 C 0.21 5.01 1.41 -68.87 -0.10 4.91 16 4 H 0.05 1.36 5.27 -51.93 -0.27 1.09 16 5 C -0.49 -13.16 8.24 -34.44 -0.28 -13.44 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.30 11.76 55.43 0.65 -24.65 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.52 -10.63 4.15 -218.77 -0.91 -11.54 16 14 C 0.06 1.15 3.26 -3.82 -0.01 1.14 16 15 C -0.12 -1.85 3.33 -26.73 -0.09 -1.94 16 16 C -0.10 -1.30 2.92 -90.62 -0.26 -1.57 16 17 C -0.15 -2.03 8.96 37.16 0.33 -1.70 16 18 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 19 C 0.08 1.34 1.93 -66.59 -0.13 1.21 16 20 C -0.12 -2.08 4.65 -25.07 -0.12 -2.20 16 21 C -0.13 -1.82 6.91 -24.74 -0.17 -1.99 16 22 C -0.12 -1.68 6.83 -25.07 -0.17 -1.85 16 23 C -0.13 -1.94 4.74 -25.61 -0.12 -2.06 16 24 H 0.05 0.95 6.41 -51.93 -0.33 0.62 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.72 4.75 -51.93 -0.25 0.48 16 27 H 0.08 2.22 6.44 -51.93 -0.33 1.89 16 28 H 0.04 0.89 5.92 -51.93 -0.31 0.58 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.62 5.01 -51.93 -0.26 1.36 16 31 H 0.02 0.38 5.77 -51.93 -0.30 0.08 16 32 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 33 H 0.07 0.96 5.17 -51.93 -0.27 0.69 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.04 0.72 4.97 -51.93 -0.26 0.47 16 42 H 0.08 1.74 7.09 -51.93 -0.37 1.38 16 43 H 0.06 1.06 6.78 -51.93 -0.35 0.71 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.67 8.00 -51.93 -0.42 0.26 16 49 H 0.09 1.36 5.10 -51.93 -0.27 1.10 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -26.77 344.26 -9.71 -36.48 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.92 Total: 3.66 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -0.69 Total: -25.53 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.26 Total: -36.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.77 -9.71 -36.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094848791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.411 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds