Wall clock time and date at job start Mon Mar 30 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47293 * 2 1 4 4 H 1.08999 * 109.46928 * 306.55777 * 3 2 1 5 5 C 1.50697 * 109.47425 * 186.56146 * 3 2 1 6 6 H 1.08002 * 120.00367 * 245.93488 * 5 3 2 7 7 C 1.37879 * 120.00048 * 65.92925 * 5 3 2 8 8 N 1.31517 * 119.99906 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00185 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47408 * 89.99964 * 9 7 5 11 11 H 1.48501 * 109.47219 * 210.00393 * 9 7 5 12 12 H 1.48504 * 109.46959 * 330.00026 * 9 7 5 13 13 N 1.46893 * 109.47452 * 66.55628 * 3 2 1 14 14 C 1.46902 * 110.99749 * 38.18814 * 13 3 2 15 15 C 1.53001 * 109.47341 * 161.77250 * 14 13 3 16 16 C 1.52999 * 109.47344 * 186.44086 * 15 14 13 17 17 C 1.52999 * 109.47118 * 64.99522 * 16 15 14 18 18 C 1.52999 * 109.47441 * 184.99976 * 16 15 14 19 19 C 1.46902 * 111.00460 * 274.23482 * 13 3 2 20 20 C 1.54268 * 110.02733 * 314.57320 * 19 13 3 21 21 C 1.54889 * 104.19720 * 217.10496 * 20 19 13 22 22 C 1.54888 * 102.74674 * 37.94515 * 21 20 19 23 23 C 1.53880 * 110.03203 * 197.41126 * 19 13 3 24 24 H 1.09000 * 109.47388 * 42.59429 * 1 2 3 25 25 H 1.08999 * 109.47356 * 162.59420 * 1 2 3 26 26 H 1.09003 * 109.47342 * 282.58948 * 1 2 3 27 27 H 1.09003 * 109.47142 * 239.99749 * 2 1 3 28 28 H 1.09003 * 109.47278 * 119.99670 * 2 1 3 29 29 H 0.97004 * 119.99771 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47738 * 41.76823 * 14 13 3 31 31 H 1.09007 * 109.46897 * 281.76855 * 14 13 3 32 32 H 1.08999 * 109.46605 * 306.43850 * 15 14 13 33 33 H 1.08994 * 109.47521 * 66.43959 * 15 14 13 34 34 H 1.09001 * 109.47247 * 304.99947 * 16 15 14 35 35 H 1.09007 * 109.47293 * 300.00101 * 17 16 15 36 36 H 1.08996 * 109.47164 * 60.00220 * 17 16 15 37 37 H 1.08999 * 109.47195 * 180.02562 * 17 16 15 38 38 H 1.09001 * 109.47176 * 59.99628 * 18 16 15 39 39 H 1.08993 * 109.47520 * 180.02562 * 18 16 15 40 40 H 1.09009 * 109.46955 * 299.99912 * 18 16 15 41 41 H 1.08997 * 110.01510 * 76.01674 * 19 13 3 42 42 H 1.08997 * 110.48909 * 335.78485 * 20 19 13 43 43 H 1.09000 * 110.48560 * 98.42513 * 20 19 13 44 44 H 1.09005 * 110.75508 * 279.63217 * 21 20 19 45 45 H 1.08992 * 110.75742 * 156.25898 * 21 20 19 46 46 H 1.08998 * 110.48851 * 203.38304 * 22 21 20 47 47 H 1.09002 * 110.60184 * 80.79291 * 22 21 20 48 48 H 1.08996 * 110.02498 * 238.56602 * 23 19 13 49 49 H 1.08995 * 110.03140 * 359.94481 * 23 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5840 1.9890 -0.8255 5 6 3.5382 1.4456 -0.1623 6 1 4.1679 1.7953 0.6424 7 6 4.1051 1.0019 -1.3383 8 7 3.3384 0.5764 -2.3184 9 14 5.9623 1.0051 -1.5393 10 1 6.5128 -0.2933 -1.0742 11 1 6.3049 1.2039 -2.9705 12 1 6.5455 2.1074 -0.7329 13 7 1.6838 2.0878 1.2706 14 6 1.8160 1.1493 2.3929 15 6 1.8880 1.9313 3.7060 16 6 2.1860 0.9687 4.8573 17 6 3.5790 0.3644 4.6691 18 6 2.1349 1.7289 6.1840 19 6 0.3286 2.6519 1.2129 20 6 0.1316 3.4191 -0.1110 21 6 -0.7381 4.6388 0.2826 22 6 -0.1737 5.0270 1.6718 23 6 0.1345 3.6743 2.3464 24 1 -0.3634 0.7565 -0.6955 25 1 -0.3634 -0.9806 -0.3074 26 1 -0.3634 0.2240 1.0030 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7372 0.2646 -3.1459 30 1 2.7255 0.5614 2.2699 31 1 0.9530 0.4836 2.4134 32 1 2.6802 2.6771 3.6416 33 1 0.9347 2.4284 3.8856 34 1 1.4425 0.1717 4.8663 35 1 3.6154 -0.1773 3.7239 36 1 4.3226 1.1613 4.6601 37 1 3.7912 -0.3217 5.4890 38 1 1.1425 2.1595 6.3181 39 1 2.3477 1.0433 7.0041 40 1 2.8785 2.5259 6.1750 41 1 -0.4109 1.8557 1.2975 42 1 1.0920 3.7476 -0.5081 43 1 -0.3903 2.7971 -0.8382 44 1 -1.7883 4.3563 0.3575 45 1 -0.6059 5.4533 -0.4294 46 1 -0.9185 5.5784 2.2456 47 1 0.7370 5.6162 1.5647 48 1 -0.6997 3.3746 2.9806 49 1 1.0455 3.7512 2.9399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094848791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:17 Heat of formation + Delta-G solvation = -29.047624 kcal Electronic energy + Delta-G solvation = -22769.933859 eV Core-core repulsion = 19923.636769 eV Total energy + Delta-G solvation = -2846.297090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67710 -37.47541 -36.88461 -34.37696 -32.61589 -30.48407 -29.34777 -28.95849 -27.89869 -27.04602 -24.73302 -23.42161 -21.74865 -21.24758 -20.53924 -19.83974 -18.26595 -17.22702 -16.67278 -16.48315 -15.80929 -15.60066 -15.45266 -14.70674 -14.64753 -14.48761 -14.09587 -13.84778 -13.49203 -13.24180 -13.14353 -13.00445 -12.90303 -12.70900 -12.53835 -12.39028 -12.17823 -12.10984 -12.03229 -11.92918 -11.81242 -11.61314 -11.52497 -11.41838 -11.29946 -11.15912 -10.97493 -10.88948 -10.65843 -10.32428 -8.61845 -8.05346 -6.12880 1.39485 1.41063 1.51036 2.44913 3.22874 3.44286 3.84096 3.91007 4.04065 4.10593 4.18825 4.29367 4.37323 4.45602 4.58257 4.64306 4.67231 4.72478 4.74289 4.77092 4.85154 4.90038 4.90746 4.94311 4.99758 5.05838 5.09947 5.13385 5.16966 5.18324 5.22757 5.26488 5.28507 5.34194 5.35123 5.46140 5.50180 5.52620 5.60186 5.62855 5.65630 5.69114 5.84023 5.86698 6.37807 6.72479 6.95540 7.03566 7.55320 9.00507 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.008143 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.885241 B = 3437.726911 C = 4689.485850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.217 3.783 4 H 0.026 0.974 5 C -0.503 4.503 6 H 0.046 0.954 7 C 0.011 3.989 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.531 5.531 14 C 0.067 3.933 15 C -0.109 4.109 16 C -0.095 4.095 17 C -0.147 4.147 18 C -0.138 4.138 19 C 0.073 3.927 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.122 4.122 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.258 0.742 30 H 0.052 0.948 31 H 0.022 0.978 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 3.976 12.658 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.110 3.890 4 H 0.044 0.956 5 C -0.542 4.542 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.254 5.254 14 C -0.061 4.061 15 C -0.146 4.146 16 C -0.114 4.114 17 C -0.205 4.205 18 C -0.196 4.196 19 C -0.036 4.036 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.160 4.160 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.151 4.303 12.553 15.075 hybrid contribution 0.788 -1.110 -1.077 1.735 sum -6.363 3.194 11.477 13.506 Atomic orbital electron populations 1.21950 0.96760 1.00347 1.00521 1.22062 0.94169 1.01502 1.00190 1.19214 0.93793 0.88872 0.87099 0.95644 1.21436 0.93037 1.40251 0.99447 0.93532 1.25587 1.01525 0.95696 0.95833 1.70043 1.35875 1.44834 1.05434 0.85728 0.81687 0.78266 0.76967 1.20480 1.21110 1.19706 1.62390 1.23631 1.35303 1.04101 1.22047 0.99134 0.93782 0.91104 1.21973 1.02104 0.97855 0.92713 1.21109 0.97095 0.97861 0.95336 1.21870 0.96985 1.00590 1.01014 1.21766 1.01995 1.00057 0.95736 1.22527 0.89643 0.96069 0.95325 1.22446 0.99176 0.97238 0.96664 1.22457 0.98997 0.96656 0.97333 1.22296 1.00484 0.96812 0.95693 1.22572 1.01892 0.94373 0.97150 0.93979 0.93624 0.92490 0.93296 0.94423 0.93320 0.93002 0.96033 0.92868 0.90126 0.91545 0.94250 0.93309 0.91801 0.92046 0.91968 0.92954 0.94201 0.93439 0.93584 0.90531 0.91470 0.89957 0.92667 0.91050 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.32 71.98 0.60 -4.86 16 2 C -0.14 -6.63 4.78 30.59 0.15 -6.49 16 3 C 0.22 10.81 1.41 44.17 0.06 10.87 16 4 H 0.03 1.41 5.27 -2.39 -0.01 1.40 16 5 C -0.50 -28.11 8.24 25.60 0.21 -27.90 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.64 5.29 84.65 0.45 1.09 16 8 N -0.92 -53.89 11.76 21.45 0.25 -53.64 16 9 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.53 -22.01 4.15 -846.05 -3.51 -25.53 16 14 C 0.07 2.50 3.26 86.30 0.28 2.78 16 15 C -0.11 -3.22 3.33 30.59 0.10 -3.11 16 16 C -0.09 -2.37 2.92 -10.79 -0.03 -2.40 16 17 C -0.15 -3.95 8.96 71.98 0.64 -3.30 16 18 C -0.14 -2.73 9.19 71.98 0.66 -2.07 16 19 C 0.07 2.54 1.93 45.64 0.09 2.63 16 20 C -0.12 -4.23 4.65 31.67 0.15 -4.09 16 21 C -0.12 -3.15 6.91 31.88 0.22 -2.93 16 22 C -0.12 -2.91 6.83 31.67 0.22 -2.69 16 23 C -0.12 -3.42 4.74 31.32 0.15 -3.27 16 24 H 0.04 1.68 6.41 -2.39 -0.02 1.67 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 2.02 4.75 -2.39 -0.01 2.01 16 27 H 0.05 2.67 6.44 -2.39 -0.02 2.65 16 28 H 0.04 1.75 5.92 -2.39 -0.01 1.74 16 29 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.05 2.20 5.01 -2.39 -0.01 2.19 16 31 H 0.02 0.79 5.77 -2.38 -0.01 0.77 16 32 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16 33 H 0.08 2.14 5.17 -2.39 -0.01 2.13 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.22 6.43 -2.38 -0.02 1.21 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.04 1.40 4.97 -2.39 -0.01 1.39 16 42 H 0.05 2.05 7.09 -2.39 -0.02 2.03 16 43 H 0.05 1.72 6.78 -2.39 -0.02 1.70 16 44 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 1.69 8.00 -2.39 -0.02 1.68 16 49 H 0.08 2.38 5.10 -2.39 -0.01 2.36 16 Total: -1.00 -59.74 344.26 3.60 -56.13 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.90 Total: 21.71 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 3.94 Total: -45.73 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -3.26 Total: -79.16 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -59.74 3.60 -56.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094848791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.086 kcal (2) G-P(sol) polarization free energy of solvation -59.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds