Wall clock time and date at job start Mon Mar 30 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47474 * 2 1 4 4 H 1.09001 * 109.46785 * 54.14536 * 3 2 1 5 5 C 1.50699 * 109.47372 * 174.14142 * 3 2 1 6 6 H 1.08000 * 120.00261 * 120.00040 * 5 3 2 7 7 C 1.37883 * 119.99821 * 300.00158 * 5 3 2 8 8 N 1.31514 * 119.99762 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00235 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46977 * 89.99802 * 9 7 5 11 11 H 1.48500 * 109.47107 * 209.99890 * 9 7 5 12 12 H 1.48500 * 109.47019 * 330.00169 * 9 7 5 13 13 N 1.46896 * 109.46984 * 294.14469 * 3 2 1 14 14 C 1.46901 * 110.99951 * 157.48034 * 13 3 2 15 15 C 1.53003 * 109.47297 * 176.33286 * 14 13 3 16 16 C 1.52998 * 110.01590 * 179.97438 * 15 14 13 17 17 C 1.52990 * 109.47386 * 315.10036 * 16 15 14 18 18 C 1.53006 * 109.47307 * 172.87190 * 17 16 15 19 19 C 1.52993 * 109.47522 * 292.87703 * 17 16 15 20 20 C 1.54267 * 110.03255 * 58.60162 * 15 14 13 21 21 C 1.54960 * 104.16202 * 217.13953 * 20 15 14 22 22 C 1.54894 * 102.77725 * 37.88980 * 21 20 15 23 23 C 1.53881 * 110.02794 * 301.38691 * 15 14 13 24 24 H 1.09003 * 109.46708 * 65.08327 * 1 2 3 25 25 H 1.08991 * 109.47231 * 185.08760 * 1 2 3 26 26 H 1.08996 * 109.46809 * 305.09006 * 1 2 3 27 27 H 1.08996 * 109.46970 * 239.99787 * 2 1 3 28 28 H 1.09007 * 109.47073 * 120.00446 * 2 1 3 29 29 H 0.97003 * 120.00235 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99950 * 281.42700 * 13 3 2 31 31 H 1.09002 * 109.47431 * 56.32789 * 14 13 3 32 32 H 1.09008 * 109.46886 * 296.32942 * 14 13 3 33 33 H 1.09001 * 109.47183 * 75.10757 * 16 15 14 34 34 H 1.09003 * 109.47007 * 195.10185 * 16 15 14 35 35 H 1.09001 * 109.46915 * 52.87551 * 17 16 15 36 36 H 1.09001 * 109.46839 * 60.00314 * 18 17 16 37 37 H 1.09002 * 109.47042 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47132 * 300.00194 * 18 17 16 39 39 H 1.08998 * 109.47391 * 74.11513 * 19 17 16 40 40 H 1.09005 * 109.47444 * 194.11977 * 19 17 16 41 41 H 1.09005 * 109.47037 * 314.11327 * 19 17 16 42 42 H 1.09000 * 110.48841 * 335.78855 * 20 15 14 43 43 H 1.09003 * 110.48329 * 98.43230 * 20 15 14 44 44 H 1.09005 * 110.71867 * 279.57988 * 21 20 15 45 45 H 1.08998 * 110.92730 * 156.29987 * 21 20 15 46 46 H 1.09004 * 110.48816 * 203.40812 * 22 21 20 47 47 H 1.08997 * 110.48461 * 80.76392 * 22 21 20 48 48 H 1.08997 * 110.02776 * 238.56598 * 23 15 14 49 49 H 1.08995 * 110.03444 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5937 1.9856 0.8330 5 6 3.5401 1.4449 0.1450 6 1 4.1563 1.8856 -0.6247 7 6 4.1257 0.8845 1.2604 8 7 5.4348 0.8861 1.3867 9 14 3.0599 0.1228 2.5921 10 1 2.8422 -1.3148 2.2899 11 1 3.7392 0.2552 3.9059 12 1 1.7509 0.8225 2.6389 13 7 1.6692 2.0929 -1.2638 14 6 1.6455 3.5543 -1.1165 15 6 1.3458 4.1987 -2.4715 16 6 1.3176 5.7221 -2.3322 17 6 0.5172 6.1054 -1.0860 18 6 0.6367 7.6119 -0.8465 19 6 -0.9535 5.7367 -1.2909 20 6 -0.0084 3.6924 -3.0095 21 6 0.2149 3.5635 -4.5375 22 6 1.6689 3.0372 -4.6280 23 6 2.4120 3.7827 -3.5002 24 1 -0.3633 0.4330 -0.9321 25 1 -0.3633 -1.0235 0.0911 26 1 -0.3633 0.5908 0.8409 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.8469 0.4916 2.1712 30 1 2.2896 1.8147 -2.0093 31 1 2.6149 3.8991 -0.7566 32 1 0.8718 3.8349 -0.4017 33 1 2.3367 6.0974 -2.2392 34 1 0.8485 6.1589 -3.2138 35 1 0.9096 5.5681 -0.2226 36 1 0.2443 8.1493 -1.7098 37 1 0.0668 7.8849 0.0417 38 1 1.6845 7.8746 -0.7004 39 1 -1.0716 4.6561 -1.2111 40 1 -1.5603 6.2258 -0.5288 41 1 -1.2763 6.0657 -2.2787 42 1 -0.2523 2.7222 -2.5766 43 1 -0.7970 4.4147 -2.7981 44 1 0.1248 4.5349 -5.0237 45 1 -0.4825 2.8486 -4.9740 46 1 2.1034 3.2813 -5.5974 47 1 1.6964 1.9611 -4.4567 48 1 2.9089 4.6662 -3.9009 49 1 3.1425 3.1215 -3.0343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094878817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:12 Heat of formation + Delta-G solvation = -42.619298 kcal Electronic energy + Delta-G solvation = -22549.372926 eV Core-core repulsion = 19702.487324 eV Total energy + Delta-G solvation = -2846.885602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81820 -37.77669 -36.28947 -34.33662 -33.34932 -30.87290 -29.81866 -28.82046 -27.72078 -26.11621 -25.11152 -23.94488 -21.63713 -21.43735 -20.81861 -19.37070 -18.97262 -17.22494 -16.72044 -16.43000 -15.75462 -15.54944 -15.11661 -14.82965 -14.69954 -14.50449 -14.30363 -13.96431 -13.73864 -13.49523 -13.32805 -13.10801 -13.00757 -12.79130 -12.61884 -12.59989 -12.35588 -12.18368 -11.85567 -11.84639 -11.67085 -11.49079 -11.40663 -11.31951 -11.20107 -11.16050 -11.06685 -10.90816 -10.69587 -10.62854 -8.97209 -8.34800 -6.39133 1.27372 1.32281 1.43228 2.27926 3.00949 3.55907 3.71287 3.88175 3.99106 4.14134 4.21161 4.28345 4.39448 4.46901 4.56510 4.58944 4.67139 4.71991 4.74730 4.78381 4.85947 4.89865 4.95297 4.96866 5.00512 5.03263 5.08265 5.12597 5.15512 5.16599 5.18293 5.26917 5.30956 5.33949 5.37270 5.42211 5.48343 5.50026 5.56437 5.61744 5.62094 5.65050 5.70046 5.81353 6.12112 6.45423 6.67146 6.83839 7.30032 8.81734 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.006143 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.886900 B = 4557.182019 C = 4888.601197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C 0.189 3.811 4 H 0.021 0.979 5 C -0.542 4.542 6 H 0.028 0.972 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.301 1.301 12 H -0.247 1.247 13 N -0.659 5.659 14 C 0.079 3.921 15 C -0.050 4.050 16 C -0.093 4.093 17 C -0.105 4.105 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.328 0.672 31 H -0.009 1.009 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 8.771 -9.181 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C 0.079 3.921 4 H 0.039 0.961 5 C -0.581 4.581 6 H 0.047 0.953 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.171 1.171 13 N -0.288 5.288 14 C -0.050 4.050 15 C -0.050 4.050 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.200 4.200 19 C -0.204 4.204 20 C -0.161 4.161 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.157 4.157 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.009 0.991 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.330 8.660 -8.973 19.761 hybrid contribution 1.908 -0.364 1.090 2.227 sum -13.422 8.296 -7.883 17.638 Atomic orbital electron populations 1.21617 0.94358 1.00743 1.02142 1.21738 0.96635 0.97571 0.99483 1.19415 0.90870 0.92072 0.89733 0.96134 1.22089 0.93163 1.37562 1.05325 0.95347 1.25878 0.95881 0.96125 1.00527 1.70074 1.11378 1.47148 1.30264 0.85805 0.79506 0.79605 0.77208 1.19157 1.22913 1.17130 1.60867 1.55393 1.06259 1.06304 1.21958 0.97494 0.88309 0.97250 1.21137 0.96132 0.94751 0.92983 1.21681 0.99413 0.93733 0.98235 1.21218 0.96704 0.96576 0.97845 1.21821 1.01231 0.95033 1.01911 1.22104 0.94727 1.01687 1.01872 1.22901 0.96007 1.02297 0.94902 1.22449 0.95502 1.00894 0.96376 1.22286 0.96359 0.99381 0.97501 1.22267 0.97486 0.99544 0.96403 0.91061 0.92665 0.94017 0.92853 0.95154 0.92669 0.85416 0.99097 0.91516 0.93573 0.90228 0.92941 0.91631 0.92492 0.93619 0.92134 0.92754 0.91230 0.91353 0.88850 0.91016 0.91284 0.91380 0.92665 0.91792 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.75 71.98 0.70 -3.73 16 2 C -0.12 -4.92 5.10 30.59 0.16 -4.76 16 3 C 0.19 8.81 1.55 44.17 0.07 8.88 16 4 H 0.02 1.01 6.94 -2.39 -0.02 0.99 16 5 C -0.54 -31.09 8.79 25.60 0.23 -30.87 16 6 H 0.03 1.82 8.02 -2.91 -0.02 1.80 16 7 C 0.01 0.81 5.45 84.66 0.46 1.27 16 8 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 9 Si 0.95 46.06 24.42 68.60 1.67 47.74 16 10 H -0.27 -12.24 6.82 99.48 0.68 -11.56 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 12 H -0.25 -11.18 6.53 99.48 0.65 -10.53 16 13 N -0.66 -25.96 4.84 -495.44 -2.40 -28.35 16 14 C 0.08 2.88 3.53 86.30 0.30 3.19 16 15 C -0.05 -1.38 0.49 -51.45 -0.03 -1.40 16 16 C -0.09 -2.23 3.84 30.59 0.12 -2.11 16 17 C -0.10 -2.44 2.41 -10.80 -0.03 -2.46 16 18 C -0.14 -2.83 9.14 71.98 0.66 -2.17 16 19 C -0.15 -2.91 7.46 71.98 0.54 -2.37 16 20 C -0.12 -2.96 4.63 31.69 0.15 -2.81 16 21 C -0.11 -2.38 6.91 31.91 0.22 -2.16 16 22 C -0.12 -2.87 6.83 31.67 0.22 -2.65 16 23 C -0.12 -3.44 5.52 31.32 0.17 -3.27 16 24 H 0.07 2.26 7.92 -2.39 -0.02 2.24 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.03 1.36 3.22 -2.38 -0.01 1.36 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.33 13.56 6.50 -89.70 -0.58 12.98 16 31 H -0.01 -0.41 7.84 -2.39 -0.02 -0.43 16 32 H 0.07 2.38 5.72 -2.38 -0.01 2.37 16 33 H 0.05 1.21 7.99 -2.39 -0.02 1.19 16 34 H 0.08 1.61 7.94 -2.39 -0.02 1.59 16 35 H 0.05 1.50 5.90 -2.39 -0.01 1.48 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.33 5.66 -2.39 -0.01 1.32 16 40 H 0.05 0.99 8.07 -2.38 -0.02 0.97 16 41 H 0.07 1.16 7.23 -2.38 -0.02 1.14 16 42 H 0.07 1.89 7.10 -2.39 -0.02 1.88 16 43 H 0.09 1.92 3.90 -2.39 -0.01 1.91 16 44 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.06 1.71 7.60 -2.39 -0.02 1.69 16 49 H 0.03 1.19 6.40 -2.39 -0.02 1.17 16 Total: -1.00 -63.34 348.75 3.74 -59.60 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.23 Total: 28.40 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 3.93 Total: -47.44 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.10 Total: -88.30 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.74 kcal Total: -63.34 3.74 -59.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094878817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.979 kcal (2) G-P(sol) polarization free energy of solvation -63.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds