Wall clock time and date at job start Mon Mar 30 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47383 * 2 1 4 4 H 1.08996 * 109.47273 * 175.03974 * 3 2 1 5 5 C 1.50705 * 109.46807 * 55.03924 * 3 2 1 6 6 H 1.07996 * 120.00066 * 239.99828 * 5 3 2 7 7 C 1.37877 * 119.99845 * 60.00550 * 5 3 2 8 8 N 1.31517 * 119.99762 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00049 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47357 * 270.00459 * 9 7 5 11 11 H 1.48495 * 109.46852 * 30.00716 * 9 7 5 12 12 H 1.48505 * 109.46614 * 150.00228 * 9 7 5 13 13 N 1.46900 * 109.47225 * 295.04171 * 3 2 1 14 14 C 1.46901 * 110.99631 * 278.24555 * 13 3 2 15 15 C 1.53005 * 109.46740 * 175.91390 * 14 13 3 16 16 C 1.53000 * 110.01645 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47098 * 315.98142 * 16 15 14 18 18 C 1.53001 * 109.47087 * 173.33724 * 17 16 15 19 19 C 1.52990 * 109.47280 * 293.33920 * 17 16 15 20 20 C 1.54272 * 110.03032 * 58.60658 * 15 14 13 21 21 C 1.54959 * 104.16174 * 217.13266 * 20 15 14 22 22 C 1.54895 * 102.77480 * 37.88907 * 21 20 15 23 23 C 1.53868 * 110.03594 * 301.39025 * 15 14 13 24 24 H 1.08999 * 109.47047 * 65.08154 * 1 2 3 25 25 H 1.09003 * 109.47134 * 185.07845 * 1 2 3 26 26 H 1.09000 * 109.46770 * 305.08506 * 1 2 3 27 27 H 1.08998 * 109.47271 * 240.00131 * 2 1 3 28 28 H 1.09001 * 109.47225 * 120.00311 * 2 1 3 29 29 H 0.97006 * 119.99816 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99567 * 42.19416 * 13 3 2 31 31 H 1.08999 * 109.47088 * 295.91035 * 14 13 3 32 32 H 1.08992 * 109.47217 * 55.91837 * 14 13 3 33 33 H 1.09005 * 109.46337 * 75.97836 * 16 15 14 34 34 H 1.08994 * 109.47074 * 195.97828 * 16 15 14 35 35 H 1.08998 * 109.47170 * 53.34193 * 17 16 15 36 36 H 1.09011 * 109.46974 * 60.00028 * 18 17 16 37 37 H 1.08995 * 109.47276 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47295 * 300.00703 * 18 17 16 39 39 H 1.09006 * 109.47243 * 312.35463 * 19 17 16 40 40 H 1.09004 * 109.47339 * 72.35596 * 19 17 16 41 41 H 1.09001 * 109.47054 * 192.35426 * 19 17 16 42 42 H 1.09001 * 110.48892 * 335.78360 * 20 15 14 43 43 H 1.09001 * 110.48118 * 98.42757 * 20 15 14 44 44 H 1.08994 * 110.72233 * 279.58029 * 21 20 15 45 45 H 1.08996 * 110.76706 * 156.22053 * 21 20 15 46 46 H 1.09004 * 110.48868 * 203.40409 * 22 21 20 47 47 H 1.09004 * 110.48454 * 80.75895 * 22 21 20 48 48 H 1.08998 * 110.03341 * 238.57000 * 23 15 14 49 49 H 1.09006 * 110.02922 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1264 1.4438 0.0889 5 6 1.4399 2.1875 1.1645 6 1 0.8302 3.0616 0.9899 7 6 1.6693 1.7531 2.4528 8 7 1.1460 2.4035 3.4690 9 14 2.7234 0.2408 2.7547 10 1 1.8623 -0.9689 2.7650 11 1 3.7352 0.1190 1.6747 12 1 3.4109 0.3702 4.0647 13 7 1.6506 2.0996 -1.2548 14 6 2.5825 1.7595 -2.3383 15 6 2.0889 2.3776 -3.6481 16 6 3.0514 2.0314 -4.7859 17 6 4.4932 2.2150 -4.3079 18 6 5.4558 1.7123 -5.3857 19 6 4.7568 3.6980 -4.0402 20 6 1.9754 3.9090 -3.5000 21 6 0.7106 4.2762 -4.3165 22 6 -0.2462 3.0960 -4.0150 23 6 0.6771 1.8608 -3.9758 24 1 -0.3633 0.4330 -0.9320 25 1 -0.3633 -1.0237 0.0910 26 1 -0.3633 0.5907 0.8410 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3071 2.0977 4.3754 30 1 0.7021 1.8649 -1.5066 31 1 3.5722 2.1504 -2.1024 32 1 2.6356 0.6762 -2.4452 33 1 2.8981 0.9956 -5.0888 34 1 2.8632 2.6897 -5.6340 35 1 4.6468 1.6472 -3.3902 36 1 5.3021 2.2800 -6.3035 37 1 6.4829 1.8426 -5.0450 38 1 5.2679 0.6556 -5.5765 39 1 4.3967 4.2889 -4.8825 40 1 4.2343 4.0021 -3.1332 41 1 5.8274 3.8598 -3.9143 42 1 1.8460 4.1825 -2.4528 43 1 2.8553 4.3988 -3.9173 44 1 0.9396 4.3254 -5.3810 45 1 0.2852 5.2171 -3.9678 46 1 -0.9872 2.9934 -4.8078 47 1 -0.7348 3.2378 -3.0509 48 1 0.6773 1.3638 -4.9458 49 1 0.3433 1.1700 -3.2014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094878818.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:14 Heat of formation + Delta-G solvation = -21.767288 kcal Electronic energy + Delta-G solvation = -22575.835214 eV Core-core repulsion = 19729.853823 eV Total energy + Delta-G solvation = -2845.981391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76007 -36.40525 -35.34785 -32.45025 -31.30123 -29.53336 -28.81024 -26.98775 -26.80438 -24.92165 -23.66410 -23.13887 -20.46168 -19.90083 -19.48240 -18.22077 -16.46696 -15.63704 -15.46504 -15.02898 -14.83577 -14.02775 -13.81540 -13.61485 -13.31164 -13.23282 -12.95094 -12.64434 -12.48525 -12.36481 -12.09422 -11.93923 -11.83481 -11.54300 -11.11086 -10.96700 -10.83719 -10.75061 -10.64538 -10.59590 -10.43156 -10.33295 -10.16852 -10.03546 -9.87612 -9.78676 -9.68087 -9.31147 -9.04111 -8.50022 -7.26752 -6.00828 -3.95958 3.28400 3.38268 3.40250 4.44256 4.71189 4.78863 4.88146 5.03479 5.10233 5.20534 5.28483 5.31398 5.53651 5.63838 5.65174 5.67533 5.75008 5.83906 5.86920 5.88960 5.91131 5.94351 5.96233 6.03741 6.06672 6.10243 6.14466 6.17124 6.18104 6.24964 6.30701 6.38850 6.39750 6.47681 6.57703 6.62069 6.63071 6.72062 6.83159 6.88999 6.93979 7.08038 7.29722 7.78778 8.02358 8.46997 8.76252 9.10737 9.63065 11.12668 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.006006 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.273224 B = 4661.235887 C = 5198.323394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C 0.185 3.815 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.298 1.298 13 N -0.668 5.668 14 C 0.064 3.936 15 C -0.057 4.057 16 C -0.097 4.097 17 C -0.103 4.103 18 C -0.146 4.146 19 C -0.154 4.154 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.116 4.116 24 H 0.039 0.961 25 H 0.029 0.971 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.262 0.738 30 H 0.331 0.669 31 H 0.070 0.930 32 H 0.014 0.986 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.055 0.945 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -0.845 -17.676 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.196 1.196 12 H -0.226 1.226 13 N -0.300 5.300 14 C -0.066 4.066 15 C -0.057 4.057 16 C -0.135 4.135 17 C -0.122 4.122 18 C -0.203 4.203 19 C -0.211 4.211 20 C -0.167 4.167 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.154 4.154 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.467 -0.242 -17.321 17.666 hybrid contribution 0.306 -2.058 0.118 2.084 sum 3.774 -2.299 -17.203 17.762 Atomic orbital electron populations 1.21647 0.95932 0.99512 1.02344 1.22499 0.97129 1.01441 0.98767 1.19670 0.95856 0.88008 0.88867 0.95082 1.20901 1.30976 1.12591 0.88101 0.90106 1.24888 0.95564 0.96553 0.96209 1.69887 1.45255 1.40275 0.98716 0.86976 0.81190 0.83972 0.76751 1.20781 1.19580 1.22553 1.60686 1.04972 1.62044 1.02268 1.22125 0.97489 0.96157 0.90787 1.21183 0.93981 0.96321 0.94226 1.21719 0.93693 1.00662 0.97437 1.21243 0.94774 0.97109 0.99025 1.21858 0.99062 1.00603 0.98808 1.22166 1.00865 0.95713 1.02307 1.22954 0.97368 0.94063 1.02305 1.22464 0.96639 0.97807 0.99104 1.22314 0.97287 0.94935 1.01324 1.22265 0.94778 0.97757 1.00579 0.94229 0.95203 0.90052 0.94968 0.93486 0.92820 0.84860 0.91174 0.96748 0.92635 0.92143 0.90489 0.93092 0.93014 0.93105 0.92838 0.90744 0.93490 0.89021 0.90600 0.92727 0.92170 0.92781 0.91185 0.92574 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.38 37.16 0.35 -2.42 16 2 C -0.16 -3.43 5.21 -26.73 -0.14 -3.57 16 3 C 0.19 4.29 1.92 -68.86 -0.13 4.15 16 4 H 0.03 0.77 6.96 -51.93 -0.36 0.40 16 5 C -0.49 -13.35 7.84 -34.44 -0.27 -13.62 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.88 22.01 24.32 -169.99 -4.13 17.88 16 10 H -0.28 -6.89 6.91 56.52 0.39 -6.50 16 11 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 12 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 13 N -0.67 -13.10 5.24 -107.95 -0.57 -13.67 16 14 C 0.06 1.05 3.50 -3.82 -0.01 1.04 16 15 C -0.06 -0.76 0.48 -153.39 -0.07 -0.83 16 16 C -0.10 -1.13 3.86 -26.73 -0.10 -1.23 16 17 C -0.10 -1.18 2.41 -90.62 -0.22 -1.40 16 18 C -0.15 -1.44 9.16 37.16 0.34 -1.10 16 19 C -0.15 -1.73 7.43 37.15 0.28 -1.45 16 20 C -0.13 -1.76 4.58 -25.03 -0.11 -1.87 16 21 C -0.12 -1.50 6.91 -24.70 -0.17 -1.67 16 22 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16 23 C -0.12 -1.52 5.51 -25.62 -0.14 -1.66 16 24 H 0.04 0.71 6.66 -51.93 -0.35 0.37 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.87 6.87 -51.93 -0.36 1.52 16 27 H 0.03 0.63 7.09 -51.93 -0.37 0.26 16 28 H 0.05 1.08 3.41 -51.93 -0.18 0.91 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.33 6.30 4.72 -39.29 -0.19 6.12 16 31 H 0.07 1.19 5.62 -51.93 -0.29 0.90 16 32 H 0.01 0.24 7.06 -51.93 -0.37 -0.12 16 33 H 0.05 0.64 7.96 -51.93 -0.41 0.22 16 34 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.08 1.00 5.93 -51.93 -0.31 0.69 16 36 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.55 7.32 -51.93 -0.38 0.17 16 40 H 0.07 0.95 5.47 -51.93 -0.28 0.66 16 41 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.09 1.51 7.10 -51.93 -0.37 1.14 16 43 H 0.08 0.94 4.03 -51.93 -0.21 0.73 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.06 0.67 7.59 -51.93 -0.39 0.27 16 49 H 0.06 0.88 6.41 -51.93 -0.33 0.55 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -28.27 342.28 -8.41 -36.67 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.96 Total: 6.05 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -0.68 Total: -25.46 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.21 Total: -40.30 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.13 Total: 17.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.27 -8.41 -36.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094878818.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.906 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds